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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002306 ID=TCONS_00002306|Name=TCONS_00002306|organism=Clytia hemisphaerica|type=transcript|length=4136bp
GGTGGGCGATAGGACGCATCCCCAGTTTGATAACGGAATCCACAAGACCA
GGGTGCACTGTCCTCTATAAGGTGCGAACGCTGTTAAGCAAGATGTAGGA
GTGTGTGTGATGAGAGGAGTGTTGAGAGTTGACGTAGAAAGTTAGAAATA
TCAGAGTGACGCTGTAGTCGTGTAACGACTGTCACTCTTCTCGCGTTTTT
GTTTCGAGCTTGGGCTGCCTCGAATCTTTTTCATGAATGGGAAGAAATTA
AGGACCAGTTGCCTAGGCCCACACGATGTGGATGAGAATTAGCTAGTGCC
GGAGTCCCAGCGCGCGGTGAGCCGCCAGTGGTTGATTTTCATTTGCCTTT
GTGTTCGATAGAGATATTATGCGAAATTGATGTATTGAAACATCTTTCAG
AGTTTACGGTTTTATTGAGATATAATTTGAGGATATTGAGATCCTGTAGT
AACTGATGTATTGAGACATCTAGAGTAAATGATTTCACGNNNNNNNNNNN
NNNNNNNNNNNNNNNATTGTTTGATAAACGAAAATTGAAGCCGCTAGACT
ACAGGTGTTTGTAAACGAACAGAACAAACACCTGTTTAAACAAAAACGAA
CGATATTTGTATATTAGATCAGAGTTTAATTCTAGATAGACGCTGCTGAT
CTAATCGCGTGGGTTGCGAAATTCGATAGGAATTCGCTCATGCAGTGGCA
AATTTTGAGTGTCGTGAGATgcaagaaaaatcaagtgatttgttttattt
cttttcgTTTGTTTCCATTCTTTTGAATAGTGTTTACCATTTGCGCTAAG
CAATTTGTCATCTATAAGGTACATCTTCGTAAGACTTCGAGTGATTTTAA
AATAAGAAAGATATCTTTGATCTAAACTCACATTAAAGAAATAAAACAGA
GACAGTGTCGGCACTCGATGTCATACGAAGATCATTTTAGTCCCCTAGTG
TTTGAGGGAAATCGCCCAATGCCAGGATTAAGATCTAGACCGGAGATGTT
GAGTCCAGACGGTAGTAACCCAATAGATTCCACCAAACCCAATCCCGGGA
TAGCGATGAGATAGTTCAGACACTTTCAAAAGCCCTTAAATACGTAACGA
AGTCTAAGAAACCGTCTGCACCCAGGGTTGTCGAAGATCCAAGAGATCCG
AatgaagggggaagaacctgTTGGTGATTTCACCAGCCGGTTCTACAAAT
TCTTTAGGAGGGGGAAAGCTACAAATGGGGAAAGTCTATTGATGTATTTG
TACATCTCGGGCTTAACGTTAAAAACTCCAAGAAATGGTGGTCTCAGGCG
GACCTGATTATAAAGTCCATTGGGGTAGGAAACTAAATGGGAAGTGTTAT
CAGCACTTCCCAGTGACCACTAAAAGAAACATGACTCTCTTTCTAAGGGT
AGAAGATAGGAACCTGCTAGCGCGATCTAGGTCCATTAATTGTACTAAGC
GAAAAAAACATACCGTGCTCATAACAAAAGATAATAAGGCGTACCATATT
GACAAACGCGGCCGTATTGACCTCTTAGGTAGCAATATACGAGACAGGGT
TCTCTTCCCACACTTGGTACGACCTCCTAGGGGCTTCAATacaaaaatat
tccttaaaaaTCCTGTCATCATGGACCAACCAAGTTTGCTACAAATGGTA
GCCGAATCAGAACGCACGTTAGAAGAACTAATTAAGATACAGGGTAGCCC
GAGTGGGTCAGGATCTATTGTCGAGGGTATTGGCATGGGATTAGCTTCAG
TCTTGGAAGCTGCAGGGTCAACAGGGGATAAGGTTATTTCAAGTTTAGGC
CGCGCTATCAAGGATACCATTAGTGGCGTCGCGGGTGGTGGTGAAAAAAT
TATTACAGCCATTGGGGAATCCGGGGGTAAACTCATAACGTCGACAGGTA
CAGCGGTTAAAGATAGTCTAACGGGAGTCTCTTTTgtattcaaagaaata
tttggTGGAATACCCGGAATGATTATTTGGGTTATACTGCTTCCGTTAGG
GGTGTATGTCGTTTACCTTAGAATAACGGGACAGATCGGTGGCTGTAGAA
CATGTAGGAACTGTCTGGGTACGGCTGGCTCGGAAACCTCATTACAAAGT
AACGAACCCCCTGCCCGAGAAACAGAAGTATACGATGTACCACGTACATT
AGAAGAGCGCATGGCACGGCCCTTCCCAGAGTATGCCTCGGTCACCCTTA
GACCTGTACCCGAGCCGCCGGCACCCAGGCAGAGCGAAGTAGAGCGAGTA
AGGCGACGAAGACAGTTAAATCGCCAACGGCTTAATAAAGCCATAAATCT
ATTGGATGAAAGGACATTTTACGCAGAAACACAGTAATGTGtacgttttt
tattttatattctatgttttttttgtttttgttttgtttattgtgGTTTG
TTTAATGGTTAAACAGCTTATAAATACGAACGAGTTGAAGCAGTTTAACT
GGTGTGTATATAGATGCGAATAGGTTGAAACGGGTTAACGGATGAGCATT
GTTGATTTTGTCTAGTGACTACTGGCGAACAGTACACGGTCCAGTAGTTA
AACGGTGTTTGACACCTGCTGttcatgaaaaaattaattttaatccGTTT
GTAATAATCGCATAGTTGACTTCTTTTCTTACAGTTTCCTCAATACGCTT
tcagaaaagaagaaaagaagttCTAGGtaagtatatatatatattttttt
tcatttgctttcGAGAGATAATGGTGTTTTTCCGTCCGCACCCAATTTTC
GGTGGTGTCCGCCGACAAAACCCAGTGGGGGTGCACCTACTGGGAAACCA
CACGTTCCAGGGTTTTAGCTCCCCAATGAATTTTTTCCGTTTAATGTCGC
TTCTTGTGATGCAGGCACCAGACGACATTACCGAGTCTGAGGAGGACCAT
ACGGCGAACATCATCGGATCCTTGACTTGGGAAGCAAACTTCCTAGAGTC
AAGGATCATGATGTACGAAGAACTCCTCCTTCCCCTACTTGCCCAGATGT
GCGACTCCACCGAGTTTGATGTGCGGCAAGTATTGTTCAGGATCTGGACG
GATCGTCTTGACATGGCGGTAGTCACCGCCCGGGTCCTGACCGATAGGTT
AAACACCAGGTTGTTCAGTGAGGTCCGTCTGCGAAGGCGGCAGAGTGCTT
CGGATGCCCTTAGTTTGGATGGAAGGTTAGTGCGTCGTATCCGTAGATAT
TTGGAACGTGGGATCCCTCACGGGAGAAGACGTCCCAATCCGATGGATAC
GGTCGACTAAGGGGTCCAGGCACTCTACCTGAAATTAAACATATgctttc
aagtttttcaagagatttttaaatttgaccttttcctCAGTATCTTTcag
gaatttttttatgaaaaaagaagCAATGACGTACAAGTATTTGCATAGGG
ATTGAAGAAGACAACACAAGAAACGCCACAAACCAATCCTTAGTCTCCCT
GAAACCAGACCTAAAACCCCTAAAACCAGAACCCAAGAGACCTATGCCCC
TCCCTGCGGTAGCTACTCATCTTCACCCATCCAACCAACACTTCTACAAA
CAACTGACTACCCAAAATGGCAACCAACACCACCAACGCCAAGGGAAACC
TGAATCTGCTGACCTACTAAATATGACCACCAAAGGAGAAACAAAGAGAC
TGGTGGCTGAGAAGACACACCAAACAAcctcaaaacaaacaaataaactt
TTAACGCCTGCTAAACCACCACCACAGGCAGCTGGGGATGACACCACTAC
CAGTCATCCACTATCATCAAGCCACCAGTATTAGTGGAACCTGCTATTTC
CGCTACCACCATAATCACCCCAGAAAGTATCCCAAGGTCAGCAGAAGATG
ATCCATCCACCAACAACTGAGAAGCACAAGACCTGTCCTGAAGAGTGGCT
ACCCCCGACCAATCTCCGATCCCCCCAAGCAAAGATGGAAGAAGTGTCAA
GTTTaggaaatttttattatttttattattttattagtcAGCCCTGAGCA
GGGAACACCTCCAAAGAAAACGCGACCCCACATAGCCATTTAAGGTCGGA
GGAATGTACTAAAGTTCCTTCGGCTATACCTTTACTGATCGTATCTAGCG
CCCTTCTAACGCCCAACTACGCCTTCCACGCTCCNN Run BLAST on NCBI transcript from alignment at sc0000019:403894..409563- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002306 ID=TCONS_00002306|Name=TCONS_00002306|organism=Clytia hemisphaerica|type=transcript|length=5670bp|location=Sequence derived from alignment at sc0000019:403894..409563- (Clytia hemisphaerica)
GGTGGGCGATAGGACGCATCCCCAGTTTGATAACGGAATCCACAAGACCA
GGGTGCACTGTCCTCTATAAGGTGCGAACGCTGTTAAGCAAGATGTAGGA
GTGTGTGTGATGAGAGGAGTGTTGAGAGTTGACGTAGAAAGTTAGAAATA
TCAGAGTGACGCTGTAGTCGTGTAACGACTGTCACTCTTCTCGCGTTTTT
GTTTCGAGCTTGGGCTGCCTCGAATCTTTTTCATGAATGGGAAGAAATTA
AGGACCAGTTGCCTAGGCCCACACGATGTGGATGAGAATTAGCTAGTGCC
GGAGTCCCAGCGCGCGGTGAGCCGCCAGTGGTTGATTTTCATTTGCCTTT
GTGTTCGATAGAGATATTATGCGAAATTGATGTATTGAAACATCTTTCAG
AGTTTACGGTTTTATTGAGATATAATTTGAGGATATTGAGATCCTGTAGT
AACTGATGTATTGAGACATCTAGAGTAAATGATTTCACGNNNNNNNNNNN
NNNNNNNNNNNNNNNATTGTTTGATAAACGAAAATTGAAGCCGCTAGACT
ACAGGTGTTTGTAAACGAACAGAACAAACACCTGTTTAAACAAAAACGAA
CGATATTTGTATATTAGATCAGAGTTTAATTCTAGATAGACGCTGCTGAT
CTAATCGCGTGGGTTGCGAAATTCGATAGGAATTCGCTCATGCAGTGGCA
AATTTTGAGTGTCGTGAGATGCAAGAAAAATCAAGTGATTTGTTTTATTT
CTTTTCGTTTGTTTCCATTCTTTTGAATAGTGTTTACCATTTGCGCTAAG
CAATTTGTCATCTATAAGGTACATCTTCGTAAGACTTCGAGTGATTTTAA
AATAAGAAAGATATCTTTGATCTAAACTCACATTAAAGAAATAAAACAGA
GACAGTGTCGGCACTCGATGTCATACGAAGATCATTTTAGTCCCCTAGTG
TTTGAGGGAAATCGCCCAATGCCAGGATTAAGATCTAGACCGGAGATGTT
GAGTCCAGACGGTAGTAACCCAATAGATTCCACCAAACCCAATCCCGGGA
TAGCGATGAGATAGTTCAGACACTTTCAAAAGCCCTTAAATACGTAACGA
AGTCTAAGAAACCGTCTGCACCCAGGGTTGTCGAAGATCCAAGAGATCCG
AATGAAGGGGGAAGAACCTGTTGGTGATTTCACCAGCCGGTTCTACAAAT
TCTTTAGGAGGGGGAAAGCTACAAATGGGGAAAGTCTATTGATGTATTTG
TACATCTCGGGCTTAACGTTAAAAACTCCAAGAAATGGTGGTCTCAGGCG
GACCTGATTATAAAGTCCATTGGGGTAGGAAACTAAATGGGAAGTGTTAT
CAGCACTTCCCAGTGACCACTAAAAGAAACATGACTCTCTTTCTAAGGGT
AGAAGATAGGAACCTGCTAGCGCGATCTAGGTCCATTAATTGTACTAAGC
GAAAAAAACATACCGTGCTCATAACAAAAGATAATAAGGCGTACCATATT
GACAAACGCGGCCGTATTGACCTCTTAGGTAGCAATATACGAGACAGGGT
TCTCTTCCCACACTTGGTACGACCTCCTAGGGGCTTCAATACAAAAATAT
TCCTTAAAAATCCTGTCATCATGGACCAACCAAGTTTGCTACAAATGGTA
GCCGAATCAGAACGCACGTTAGAAGAACTAATTAAGATACAGGGTAGCCC
GAGTGGGTCAGGATCTATTGTCGAGGGTATTGGCATGGGATTAGCTTCAG
TCTTGGAAGCTGCAGGGTCAACAGGGGATAAGGTTATTTCAAGTTTAGGC
CGCGCTATCAAGGATACCATTAGTGGCGTCGCGGGTGGTGGTGAAAAAAT
TATTACAGCCATTGGGGAATCCGGGGGTAAACTCATAACGTCGACAGGTA
CAGCGGTTAAAGATAGTCTAACGGGAGTCTCTTTTGTATTCAAAGAAATA
TTTGGTGGAATACCCGGAATGATTATTTGGGTTATACTGCTTCCGTTAGG
GGTGTATGTCGTTTACCTTAGAATAACGGGACAGATCGGTGGCTGTAGAA
CATGTAGGAACTGTCTGGGTACGGCTGGCTCGGAAACCTCATTACAAAGT
AACGAACCCCCTGCCCGAGAAACAGAAGTATACGATGTACCACGTACATT
AGAAGAGCGCATGGCACGGCCCTTCCCAGAGTATGCCTCGGTCACCCTTA
GACCTGTACCCGAGCCGCCGGCACCCAGGCAGAGCGAAGTAGAGCGAGTA
AGGCGACGAAGACAGTTAAATCGCCAACGGCTTAATAAAGCCATAAATCT
ATTGGATGAAAGGACATTTTACGCAGAAACACAGTAATGTGTACGTTTTT
TATTTTATATTCTATGTTTTTTTTGTTTTTGTTTTGTTTATTGTGGTTTG
TTTAATGGTTAAACAGCTTATAAATACGAACGAGTTGAAGCAGTTTAACT
GGTGTGTATATAGATGCGAATAGGTTGAAACGGGTTAACGGATGAGCATT
GTTGATTTTGTCTAGTGACTACTGGCGAACAGTACACGGTCCAGTAGTTA
AACGGTGTTTGACACCTGCTGTTCATGAAAAAATTAATTTTAATCCGTTT
GTAATAATCGCATAGTTGACTTCTTTTCTTACAGTTTCCTCAATACGCTT
TCAGAAAAGAAGAAAAGAAGTTCTAGGTAAGTATATATATATATTTTTTT
TCATTTGCTTTCGAGAGATAATGGTGTTTTTCCGTCCGCACCCAATTTTC
GGTGGTGTCCGCCGACAAAACCCAGTGGGGGTGCACCTACTGGGAAACCA
CACGTTCCAGGGTTTTAGCTCCCCAATGAATTTTTTCCGTTTAATGTCGC
TTCTTGTGATGCAGGCACCAGACGACATTACCGAGTCTGAGGAGGACCAT
ACGGCGAACATCATCGGATCCTTGACTTGGGAAGCAAACTTCCTAGAGTC
AAGGATCATGATGTACGAAGAACTCCTCCTTCCCCTACTTGCCCAGATGT
GCGACTCCACCGAGTTTGATGTGCGGCAAGTATTGTTCAGGATCTGGACG
GATCGTCTTGACATGGCGGTAGTCACCGCCCGGGTCCTGACCGATAGGTT
AAACACCAGGTTGTTCAGTGAGGTCCGTCTGCGAAGGCGGCAGAGTGCTT
CGGATGCCCTTAGTTTGGATGGAAGGTTAGTGCGTCGTATCCGTAGATAT
TTGGAACGTGGGATCCCTCACGGGAGAAGACGTCCCAATCCGATGGATAC
GGTCGACTAAGGGGTCCAGGCACTCTACCTGAAATTAAACATATGCTTTC
AAGTTTTTCAAGAGATTTTTAAATTTGACCTTTTCCTCAGTATCTTTCAG
GAATTTTTTTATGAAAAAAGAAGCAATGACGTACAAGGTAAATTACGCAA
ACTCCGTAAGTATTCTACNGATGCGAATAGGTTGAAACGGGTTAACGGAT
GAGCATTGTTGATTTTGTCTAGTGACTACTGACGAACAGTACACGGTCCA
GTAGTTAAACGGTGTTTGACACCTGCTGTTCATGAAAAAATTAATTTTAA
TCCGTTTGTAATAACCGCATAGTTGACTTCTTTTCTTACAGTTTCCTCAA
TACGCTTTCAGAAAAGAAGAAAAGAGGTTCTAGGTAAGTATATATATATA
TATTTTTTTTCATTTGCTTTCGAGAGATAATGGTGTTTTTCCGTCCGCAC
CCAATTTTCGGTGGTGTCCGCCGACAAAACCCAGTGGGGGTGCACCTACT
GGGAAACCACACGTTCCAGGGTTTTAGCTCCCCAATGAATTTTTTCCGTT
TAATGTCGCTTCTTGTGATGCAGGCACCAGACGACATTACCGAGTCTGAG
GAGGACCATACGGCGAACATCATCGGATCCTTGACTTGGGAAGCAAACTT
CCTAGAGTCAAGGATCATGATGTACGAAGAACTCCTCCTTCCCCTACTTG
CCCAGATGTGCGACTCCACCGAGTTTGATGTGCGGCAAGTATTGTTCAGG
ATCTGGACGGATCGTCTTGACATGGCGGTAGTCACCGCCCGGGTCCTGAC
CGATAGGTTAAACACCAGGTTGTTCAGTGAGGTCCGTCTGCGAAGGCGGC
AGAGTGCTTCGGATGCCCTTAGTTTGGATGGAAGGTTAGTGCGTCGTATC
CGTAGATATTTGGAACGTGGGATCCCTCACGGGAGAAGACGTCCCAATCC
GATGGATACGGTCGACTAAGGGGTCCAGGCACTCTACCTGAAATTAAACA
TATGCTTTCAAGTTTTTCAAGAGATTTTTAAATTTGACCTTTTCTCAGTA
TCTTTCAGGAATTTTTTTATGAAAAAAGAAGCAATGACGTACAAGGTAAA
TTATGCAAACTCCGTAAGTATTCTAAAAGTACCGCAGGCATCGTTCCGCC
TTGCCTGTCTTGCCTGTATTTTTTTATCCCTAAATTCACAATCAATCTTC
AGTTTTTTTTTTAGAAACAGATTCCACTGTAACAAAGGTCAACTTGCTTT
CTTTCTTAAAATTTTTTTCTTGTTAAACTTTCATCTGAATGAGGTCTGAA
ATTCGAGTTCTCTTCTTATCGGGTCGGAATTTAAAGGTGTAGAAAGTTCT
ATAAAAAATCATTTCATTTTTAAAGGAAAGAGAGANTCGAGTTCTCTTCT
TATCGGGTCGGAATTTAAAGGTGTAGAAAGTTCTATAAAAAATCGTTTCA
TTTTTAAAGGAGAGAGAGAAAAAAAAAAAGGGAAACGAGAAATTCGAAGT
TGGGACTGCACTCCGTATTAAATTTTTATTTTATATTCTATGTTGAATTA
ACGATTTTTTTTTATATATATTTATAGTATTTGCATAGGGATTGAAGAAG
ACAACACGAGAAACGCCACAANTTATTTTAATTTCTAGGTTGAATTAACG
ATTTTTTATATATATTTATAGTATTTGCATAGGGATTGAAGAAGACAACA
CAAGAAACGCCACAAACCAATCCTTAGTCTCCCTGAAACCAGACCTAAAA
CCCCTAAAACCAGAACCCAAGAGACCTATGCCCCTCCCTGCGGTAGCTAC
TCATCTTCACCCATCCAACCAACACTTCTACAAACAACTGACTACCCAAA
ATGGCAACCAACACCACCAACGCCAAGGGAAACCTGAATCTGCTGACCTA
CTAAATATGACCACCAAAGGAGAAACAAAGAGACTGGTGGCTGAGAAGAC
ACACCAAACAACCTCAAAACAAACAAATAAACTTTTAACGCCTGCTAAAC
CACCACCACAGGCAGCTGGGGATGACACCACTACCAGTCATCCACTATCA
TCAAGCCACCAGTATTAGTGGAACCTGCTATTTCCGCTACCACCATAATC
ACCCCAGAAAGTATCCCAAGGTCAGCAGAAGATGATCCATCCACCAACAA
CTGAGAAGCACAAGACCTGTCCTGAAGAGTGGCTACCCCCGACCAATCTC
CGATCCCCCCAAGCAAAGATGGAAGAAGTGTCAAGTTTAGGAAATTTTTA
TTATTTTTATTATTTTATTAGTCAGCCCTGAGCAGGGAACACCTCCAAAG
AAAACGCGACCCCACATAGCCATTTAAGGTCGGAGGAATGTACTAAAGTT
CCTTCGGCTATACCTTTACTGATCGTATCTAGCGCCCTTCTAACGCCCAA
CTACGCCTTCCACGCTCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002306-exon-sc0000019-1575043694:406177..409563 | TCONS_00002306-exon-sc0000019-1575043694:406177..409563 | Clytia hemisphaerica | exon |
| TCONS_00002306-exon-sc0000019-1575043694:403894..404642 | TCONS_00002306-exon-sc0000019-1575043694:403894..404642 | Clytia hemisphaerica | exon |
| TCONS_00002306-exon-sc0000019-1510915933:406177..409563 | TCONS_00002306-exon-sc0000019-1510915933:406177..409563 | Clytia hemisphaerica | exon |
| TCONS_00002306-exon-sc0000019-1510915933:403894..404642 | TCONS_00002306-exon-sc0000019-1510915933:403894..404642 | Clytia hemisphaerica | exon |
| TCONS_00002306-exon-sc0000019-1491911889:406177..409563 | TCONS_00002306-exon-sc0000019-1491911889:406177..409563 | Clytia hemisphaerica | exon |
| TCONS_00002306-exon-sc0000019-1491911889:403894..404642 | TCONS_00002306-exon-sc0000019-1491911889:403894..404642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:403894..409563 - |
Blast
The following BLAST results are available for this feature:
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