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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002298 ID=TCONS_00002298|Name=TCONS_00002298|organism=Clytia hemisphaerica|type=transcript|length=1160bp
AAagtccacgaagccttaaaatgttcttataaaaaaacgtgtatccccTG
TAATAGTCAATTTTTTCACCGTTTATATTTATAACTGAGGAATTATACTT
ACAAGAGACCAATGAGATTAATTATGATCTTCGGGGATAATCTTCACAAA
GCAGAGCCAAAACAAGAGTGTGGAGCTTGTGGATGGGTGGATCTGGCAGT
CTGGTTTAGGCTTCTTCGCCGGTAAGATACTATCTGACGGAGAACTATTA
TGGTTTACTATGTTTAACAAGGCAAGGGGCACTCACCCGCAGATTTATTA
ACTTCCGTATTGCTTACGTAACCAGTCTAATCGATTGCGGACGAAAATCA
GTGTGTATTTCTTAGTTATCGACCATTTCAGTACATTTTCTAAAAGTCAT
CAactgaaatatcaaaatagaaCTTTCGTGTTATCACGTGGCATTTACTC
AACCAATGGCTTTTATTTTCGTGATCTAAACAAACTTGGCTAACAACATT
GAAACTTCCTCTCAAAAAAAACCTAAACGAAAGAAGACACATAATTTTAg
tagttttcaaaatatttcaaaaatggcTCCAAAACAAAGAATGAGGGTTG
CCAATGAAAAGCACAGCCAAAATGTCAACTTACGTGGAAATGTACCTAAA
ACGATGaaCCCAAAAGATGAGAAATATGCTGTTGGACCATGGCTTCTGgg
attgtttttgtttgttgtcTGTGGATCAGctGTCTTCCAAATCATTCAAA
GTATCAGATACggattttaaagaaaaaaccaTCAAATTGAATTCTGGGTA
TTTTTTTCTGGTGTCGgaatatattatatttattgCGCAAGAGAATTTTA
ATAACAAATATATAAAATTGGCAATTGTAATTTATAAAGAAACTGTATAT
ACAGAAAATTCTTCAATCTGGTTTCGTCGAAAGAGGCAATTTTGATACCT
TGTTAAACCCGTTAAAATCGACTtggtttttttaaagattttattttaag
atttttaactttgagacttttttgaagttgaaaaaaattttgttctcACA
TTACCTTACAACACACCGTTTTCTTTATAAATAGTTTATTTGATATAAAC
AATTAAATTGTATGATGAGGAATTTTGTTTTTCTactaaaaaatgatatt
ttcatgtatt Run BLAST on NCBI transcript from alignment at sc0000019:280559..286939- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002298 ID=TCONS_00002298|Name=TCONS_00002298|organism=Clytia hemisphaerica|type=transcript|length=6381bp|location=Sequence derived from alignment at sc0000019:280559..286939- (Clytia hemisphaerica)
AAAGTCCACGAAGCCTTAAAATGTTCTTATAAAAAAACGTGTATCCCCTG
TAATAGTCAATTTTTTCACCGTTTATATTTATAACTGAGGAATTATACTT
ACAAGAGACCAATGAGATTAATTATGATCTTCGGGGATAATCTTCACAAA
GCAGAGCCAAAACAAGAGTGTGGAGCTTGTGGATGGGTGGATCTGGCAGT
CTGGTTTAGGCTTCTTCGCCGGTAAGATACTATCTGACGGAGAACTATTA
TGGTTTACTATGTTTAACAAGGCAAGGGGCACTCACCCGCAGATTTATTA
ACTTCCGTATTGCTTACGTAACCAGTCTAATCGATTGCGGACGAAAATCA
GTGTGTATTTCTTAGTTATCGACCATTTCAGTACATTTTCTAAAAGTCAT
CAACTGAAATATCAAAATAGAACTTTCGTGTTATCACGTGGCATTTACTC
AACCAATGGCTTTTATTTTCGTGATCTAAACAAACTTGGCTAACAACATT
GAAACTTCCTCTCAAAAAAAACCTAAACGAAAGAAGACACATAATTTTAG
TAGTTTTCAAAATATTTCAAAAATGGCTCCAAAACAAAGAATGAGGGTTG
CCAATGAAAAGCACAGCCAAAATGTCAACTTACGTGGAAATGTACCTAAA
ACGATGGTGAGTATTTTTACTTGGCCAGAAAAAAAAGTTTTCTTTGGAGG
GATATAATAATAATAATAATAATGATATATTTCTGGCATTTCCAAAATTT
ACATTTGGCTCTTCACCTGAAAATTCTGTATATAATATATGTGCAATGTC
TAGAAAAAATTGTAAAATAACCTGGTAGTATACTGAAGAAAAATTGGGGC
CGTATGCGGACAAGCAGATAGGGCACAAGTGTTACGCGTAAGCCAAATCG
CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATAA
CACCCCTTTCTTAAATAAATGGCCTCTTAAAGTCTTTTATGTTTGCCGCA
AGAAGGAAGAAAAATTTAATTTGACCCCCGGTTTTTTCTCTCGATTTCGC
GCGTGTTAGTGTAGACACAACTTTAATCCGGGGAAATGAAGCGTTTTCAT
TGGTCTAGAATCACAGATGGTCACGTGACCAGAATTTTTATCCAGGGAAA
TGCCGTGGCCGCAATGTTTTGCTTTAGTGAGATCGACCATTTTGTTGTTT
AGATTTGAGCGGGCGAAATTTCTGTACAAACCAAAATATGGCTTCGTTGG
AATACCGGTTGAAACACTTGTGAGGGACGAAGCGGTGGGCTAGTATGACG
AATAAAATGATTAGGATTAAGAAGTATAAGGGGTAAAATGTGAATAGTGA
TAGAGCTAGACTAAAACCTAAACAAATCCGAGTATCTGAGTATGCTAGCT
GAGGCCATCGCAATGTGTGCTATTATAAAAAATTAACGAATATATTTAAN
NNTTAAAAAAAAAAAAAAATACTAACATAATGTTATAAGCTAGACTAGAC
TAAGGTTCAAGTACTATTGGTGGCTAGAGGTAAAGTAAGCGACAAAATAG
ATCTGAGAACTCGGTGTGATAGAATCACGACAGAGCGTAAGATAGAATGA
GTAAAACTTGCATAGATTGCAACACCGAAGGCTGTGTAAAGTGTACTGGA
CCTTGCAAAACACGACCAGTATTTTGACATAAATAAGTGAGCTATCAACT
ATCTAAATTAAATTAATTGAAAATAATTAAACATCAAATGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTGACAGGTAGCCAT
TTCATATCTATTACGTCAGACTTGCGAGAGTAGCTCTTCCGGACGAAGCT
AGCTGTGGCATTTTGGACTCGTTGTAATTGCTATATTTTCCATCCAATAT
TTCTTATATAAATTTATAATATGTTTTTGGATGAAGGGAGGTCTTTGACT
GGACAAGACAGTCCAGTGTTTGTTAGTTTTTGCATCATGTGAATTCTTGA
CATTGGACTTTTTTCTTTATAATTTTTTAAGATTGCCCTGTCTGTGTTAG
CCTGGGAATCCAAGCGTTAAACTTTTTTCACAGTCTAGTTTATGATTTTT
TGCTGCTGGTTTAACGCTTGGTGCAGGTAACTCGCCTGCAGGGACATTTT
TCCCTGCAATGCAGGTTCGGCCTGATTGGCCAGCTTTCGGCGTATTACTT
AGCACAGCAGTACTATCGCGCGCATTTTGATAATTTCGATAAGAGTTTTT
TATGGTAAGTTGATTATGTGTGTTTGCCTGGGTTTCCAAAGTTCAGAAAG
TCTGTCAACAAGGGTTCATACACAGACTGTTTATAACATTCTGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCAGACTAATCTACCT
GCACCAAGCTCTATAATTTTAGAACTTTGTGAGGTGAGGTATTTTTTGTT
TTTTCTAAAATTATGAGCTTGGATTCCCAGGCTATGTCTGTGTGTGGTAA
AAAGTTCATTCTCATTCAACAACACCAGAAATTTTCTGTGTCTGGTGCTT
CTTTAAGTCAGGTGCATCGGCAGGGTTGCTTGCCAGCCTATAAAAAACAA
AGCAAAACCTCTGAATGATCCTACTTCTGACTAACTTGTTCTCAAATTTG
ATGGGATCTTTCAAAGATGCACAAACAGAAATAAAAACAAACCTTTCTCA
GTGAAATATATAAAGAGGTATTTCCATCTGGGAATTCTGTATAATTCATC
AAAATGTTAACCCTCTCAGACAAAAAAACCATGGTTTGACCATTGCTTTC
ACCATGACACCAACTAAACTATTTTGAATTACATATAAAAGCAATGTTTT
CATACAAAACTACATACTATTTATTTTATTATGTACCATGAGATCAGGTA
ACTTGCATCAGTGGAGGCAAATATGCATAGCCCTCAAATGAATGACCTGT
CTGGTCAATAAATTACAAAGTAAAATAAAAACAAAAATGATAGAGTAGAG
CTGCGAGCAGAGCTACGTAGTTCATTTGTTTGAAATTTTGCTGCTTTGAT
AGGTCAGTCATTTGATGGTATGCAAGTTTCCCTCCACTGATGCAGGTTAC
CCCACTTCATGGTGCCGTTAATCGAGTATTCTTTGTGAGCATATATGTTT
CACAAGGGCAGTTTTTTTCATTTTATTTTTGCAGAACTTATTTTGGCAAG
GCACAAGCAATGAAAATTATCACACGGATAGATAGAATCAGCCTCTTTTT
AATTTAATTTCTTTCACTTTCCTAGGGGTGTAGGTAAAAATTGTGATTTC
AGATCTCGTGCAAGGATTATATTTTGCAAAGATTTTTAAAATTTTGTGAT
CATTAAATTTCATGAATTCCCAGAAAAACTGGCGAAACTTACAAGATTTC
ATGCTTGCCTAAATTAATCCACTTGAGGTACAATGAAATGTCACAATGTC
AAACTTGCTGTCTTGTCAAATGCTTTGTTTTGAAAGAACCTTCTTCAGAC
TTTACCAGTTGGGTGTTTGAAGATAAGAACGCCAATTATTGCTCTTTTCG
GCAATTATTGCCAAAAGAGACAATTTTTTCAGCGATGAAATGCTGAATCA
GCAGAAAAATAAAAAAAGTAAATAAATGAAAATTGCCGTTTTTGGAAAGA
AAAGTTGATTTTCTTATTGAACACGTGGTAGTTGACACCCTGGTGATAAG
TAGGCCCACTGTGCCTAGTTTAGTTTTGTTTTCATCTGGTTTTTGTTGGA
AATGTAGCTAGCAAAATCAAGTCGCATGTAAACAAACTTACAACAGGGAT
TTTGTTATCTCTTTCTGGCTGTGTTTTGGCATCGATGCAGGATCTTTTTA
CATAATATTTTAGAAGTTTTCATGTTATTGAGCAACAAAAAATTGGAAAA
AATCACTTTTAAAAATTTGAAAAACCTTTTTCTTGATGTAATTTTACAAT
TTTCAAACACCTGACATCTTTGCCCTTATAAGGACAACATTTTTTGCTGA
TTCAGCATTTAATCGTTAAAAAAAATGCCATTTTCGGAAATAATTGCCAC
TCACAGTACAATTTGAACTCCAAAGATTTTTGACCGATTATTTCTATAAA
AATCTTGGAAATTATTGATAAACCCTTATAGAAACTCATAATACCCTAAG
TAAGGTGTAGAAAATTATGTTTTATCTTAATGTAAAAAAGGTTTCCACAT
GATGATCACTTTTAGCCTGATTGTTTAAATGAAGGTATTGATTTAATGAG
CCTGATGGAAACATTTTTTAACTTTTATTTATTTGTTCAGCTGTTTCAAA
ATTTTAATTTGATTTTCTATTTTAGCATTCTTTGTTGACTTTTAATCATT
TTTTATTATCAGATAATAATGTGATTCTTTTTGTTTTTCAGAACCCAAAA
GATGAGAAATATGCTGTTGGACCATGGCTTCTGGGATTGTTTTTGTTTGT
TGTCTGTGGATCAGGTAAATAATTCTAATCTTTTCTGATTTACTTTCATC
GGATCAGTAAATCTGCATTCAACAAATTTCTACCTCAGCTTTCTTAAAAA
TATTTTCAGATTTACTTCATTCCAGGTTTATTGCATCAGGTTTTGTAAGA
AGAAATCAGAATTCAAATTAAATATATATACTTTTTCTCTTTTTTTTCAG
CTGTCTTCCAAATCATTCAAAGTATCAGATACGGATTTTAAAGAAAAAAC
CATCAAATTGAATTCTGGGTATTTTTTTCTGGTGTCGGAATATATTATAT
TTATTGCGCAAGAGAATTTTAATAACAAATATATAAAATTGGCAATTGTA
ATTTATAAAGAAACTGTATATACAGAAAATTCTTCAATCTGGTTTCGTCG
AAAGAGGCAATTTTGATACCTTGTTAAACCCGTTAAAATCGACTTGGTTT
TTTTAAAGATTTTATTTTAAGATTTTTAACTTTGAGACTTTTTTGAAGTT
GAAAAAAATTTTGTTCTCACATTACCTTACAACACACCGTTTTCTTTATA
AATAGTTTATTTGATATAAACAATTAAATTGTATGATGAGGAATTTTGTT
TTTCTACTAAAAAATGATATTTTCATGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002298-exon-sc0000019-1575043694:286284..286939 | TCONS_00002298-exon-sc0000019-1575043694:286284..286939 | Clytia hemisphaerica | exon |
| TCONS_00002298-exon-sc0000019-1575043694:281176..281248 | TCONS_00002298-exon-sc0000019-1575043694:281176..281248 | Clytia hemisphaerica | exon |
| TCONS_00002298-exon-sc0000019-1575043694:280559..280989 | TCONS_00002298-exon-sc0000019-1575043694:280559..280989 | Clytia hemisphaerica | exon |
| TCONS_00002298-exon-sc0000019-1510915933:286284..286939 | TCONS_00002298-exon-sc0000019-1510915933:286284..286939 | Clytia hemisphaerica | exon |
| TCONS_00002298-exon-sc0000019-1510915933:281176..281248 | TCONS_00002298-exon-sc0000019-1510915933:281176..281248 | Clytia hemisphaerica | exon |
| TCONS_00002298-exon-sc0000019-1510915933:280559..280989 | TCONS_00002298-exon-sc0000019-1510915933:280559..280989 | Clytia hemisphaerica | exon |
| TCONS_00002298-exon-sc0000019-1491911889:286284..286939 | TCONS_00002298-exon-sc0000019-1491911889:286284..286939 | Clytia hemisphaerica | exon |
| TCONS_00002298-exon-sc0000019-1491911889:281176..281248 | TCONS_00002298-exon-sc0000019-1491911889:281176..281248 | Clytia hemisphaerica | exon |
| TCONS_00002298-exon-sc0000019-1491911889:280559..280989 | TCONS_00002298-exon-sc0000019-1491911889:280559..280989 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:280559..286939 - |
Blast
BLAST of TCONS_00002298 vs. Swiss-Prot (Human)
Match: SERP2 (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens GN=SERP2 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.387e-27 Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 3
Query: 573 MAPKQRMRVANEKHSQNVNLRGNVPKTMNPKDEKYAVGPWLLGLFLFVVCGSAVFQIIQSIRYGF 767
M KQR+R+ANEKHS+N+ RGNV KT+ P++EKY VGPWLL LF+FVVCGSA+FQIIQSIR G
Sbjct: 1 MVAKQRIRMANEKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMGM 65
The following BLAST results are available for this feature:
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