Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00002290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002290
Unique NameTCONS_00002290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002290 ID=TCONS_00002290|Name=TCONS_00002290|organism=Clytia hemisphaerica|type=transcript|length=1590bp
AAATTGTTTGACTTGATTCTTAACACATTATAGAAAGATAGCGATATCTT
AACAAGTTAATACATGAAACTCGAGAGGACTGCAACAACATCAAACTGAA
AAAAgtatcattcagtcaaaataaGAGAATCAAAGGATTCTTGGTGGAAG
GAGGGCAATTTTTCAGGCTACACTGAAATATTTTTAGCCTGAAAACACAT
ACAAAAGAAATGTCAACGAAAAAGAACTCAGACTTACATTTAGACTTGCG
TGAGGTATTACGTGACGCCAACCCAAACGCTGAACTATCGTGTGTTGTAC
GTGACCCGAACGGACAGAACATTGATTCAGCAATCGAAGTATCGAGTGCT
CGAGGACGGAATGTGAAATTTTTCCCGAAACTGACCGGCAAACACAGCGT
TTATTTGTATTATGATACAGATTTGGTTCCTGGGTCACCTTTTATCATTG
AGGTATTGCAAAAACCGAAATTGATTAAATGAGTTTGATTGTGGTATATG
GACTTGTATGGATTCGGTTATTTGTGGTGGAGGGCCGATTGTATATTTTA
ATTGTTAAccctttatatttttttcattatttaaatTCATCTTTTATTCT
TGACTAGAAATGAAACAGTGAAGTCTATTCCAATGGCAAATGGCAAAAAT
GACAGTTCGCACTTTTTGGTACTTTGCTCTTGAAGGAAAAAGTACAACAA
CgccttgttggaaagataattttgagtagATGAATTTAAGGGTTTAAGAT
tatcaaaaaattctaaatcgaggatgaaaaatgaagaagaagaaaatgaa
gatttctaCTAGACCGAAATCCTTGATGAATTTATACTTTTCCGAAACTT
TGAACTCCGCCGATTTCAAATACGTATTCAGAAATTTCATNTACTTTTCC
GAAACTTTAAATTTCGCCGATTTCAAATACGTATTCAGAAATTTCATATC
ATTCTAGGAACATCACTTACAGCCATACAAAAAAGGGTGACAGTGACCAA
AAATGGTTTAAGTCTGCCCACTTTGAatagctgtaacttttgaagTAAAA
TGTATCCCTAACTCGGAAGATTTTCTGGTGTGTTCTAAAACGGTTTAAAA
CAATCTGTTAACATACTGTCAGATAATCATAACGATAAAAACCAAGTAAT
TCTTGGCTGCAAAGTTTAAGTGGATAAATCAGAAgctttatttaaatatt
ttcaaaaaatgggcTTTGAACAGTTGTTTTAAGCTAAAAGTTAGCAATAA
TTTGACCCACGTAAGACTCCCACAGTTTAAAATTTACAGCCTTTATTTCA
TAATGGCCAGTAATTATTGTGTTAGCTCTTCTTGTTTTTGCCATTAGGGC
ACTTTTGCTCTCAAATTATTCATATCATATTATTTAAGATGATTATGTAA
GGTAATCCAGGCTATTTTACCCAAACTTCCTACGTAATTTTTCATATAAA
AGATAAGACTGCAAATTTTCATGATCAaccatttttattgtttttcctAC
TAACCAAAtagaattttcttttcttatttattGAAAGCTTGTATATTATA
CATTacataaaaataacattttgttaaaaaatcgaaaaag
Run BLAST on NCBI

transcript from alignment at sc0000019:378..2080-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002290 ID=TCONS_00002290|Name=TCONS_00002290|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at sc0000019:378..2080- (Clytia hemisphaerica)
AAATTGTTTGACTTGATTCTTAACACATTATAGAAAGGTAAACTCTGTAG GATTGCTCTTAATTGTAGTTTGAAAAAACTTTACATAAGGAGCATACAAA ATATTTGTAACCAGATCTGACTTGTGAAAACATTGTTGTTATTTCTTTAG ATAGCGATATCTTAACAAGTTAATACATGAAACTCGAGAGGACTGCAACA ACATCAAACTGAAAAAAGTATCATTCAGTCAAAATAAGAGAATCAAAGGA TTCTTGGTGGAAGGAGGGCAATTTTTCAGGCTACACTGAAATATTTTTAG CCTGAAAACACATACAAAAGAAATGTCAACGAAAAAGAACTCAGACTTAC ATTTAGACTTGCGTGAGGTATTACGTGACGCCAACCCAAACGCTGAACTA TCGTGTGTTGTACGTGACCCGAACGGACAGAACATTGATTCAGCAATCGA AGTATCGAGTGCTCGAGGACGGAATGTGAAATTTTTCCCGAAACTGACCG GCAAACACAGCGTTTATTTGTATTATGATACAGATTTGGTTCCTGGGTCA CCTTTTATCATTGAGGTATTGCAAAAACCGAAATTGATTAAATGAGTTTG ATTGTGGTATATGGACTTGTATGGATTCGGTTATTTGTGGTGGAGGGCCG ATTGTATATTTTAATTGTTAACCCTTTATATTTTTTTCATTATTTAAATT CATCTTTTATTCTTGACTAGAAATGAAACAGTGAAGTCTATTCCAATGGC AAATGGCAAAAATGACAGTTCGCACTTTTTGGTACTTTGCTCTTGAAGGA AAAAGTACAACAACGCCTTGTTGGAAAGATAATTTTGAGTAGATGAATTT AAGGGTTTAAGATTATCAAAAAATTCTAAATCGAGGATGAAAAATGAAGA AGAAGAAAATGAAGATTTCTACTAGACCGAAATCCTTGATGAATTTATAC TTTTCCGAAACTTTGAACTCCGCCGATTTCAAATACGTATTCAGAAATTT CATNTACTTTTCCGAAACTTTAAATTTCGCCGATTTCAAATACGTATTCA GAAATTTCATATCATTCTAGGAACATCACTTACAGCCATACAAAAAAGGG TGACAGTGACCAAAAATGGTTTAAGTCTGCCCACTTTGAATAGCTGTAAC TTTTGAAGTAAAATGTATCCCTAACTCGGAAGATTTTCTGGTGTGTTCTA AAACGGTTTAAAACAATCTGTTAACATACTGTCAGATAATCATAACGATA AAAACCAAGTAATTCTTGGCTGCAAAGTTTAAGTGGATAAATCAGAAGCT TTATTTAAATATTTTCAAAAAATGGGCTTTGAACAGTTGTTTTAAGCTAA AAGTTAGCAATAATTTGACCCACGTAAGACTCCCACAGTTTAAAATTTAC AGCCTTTATTTCATAATGGCCAGTAATTATTGTGTTAGCTCTTCTTGTTT TTGCCATTAGGGCACTTTTGCTCTCAAATTATTCATATCATATTATTTAA GATGATTATGTAAGGTAATCCAGGCTATTTTACCCAAACTTCCTACGTAA TTTTTCATATAAAAGATAAGACTGCAAATTTTCATGATCAACCATTTTTA TTGTTTTTCCTACTAACCAAATAGAATTTTCTTTTCTTATTTATTGAAAG CTTGTATATTATACATTACATAAAAATAACATTTTGTTAAAAAATCGAAA AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001214XLOC_001214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002290-exon-sc0000019-1575043694:2044..2080TCONS_00002290-exon-sc0000019-1575043694:2044..2080Clytia hemisphaericaexon
TCONS_00002290-exon-sc0000019-1575043694:378..1930TCONS_00002290-exon-sc0000019-1575043694:378..1930Clytia hemisphaericaexon
TCONS_00002290-exon-sc0000019-1510915933:2044..2080TCONS_00002290-exon-sc0000019-1510915933:2044..2080Clytia hemisphaericaexon
TCONS_00002290-exon-sc0000019-1510915933:378..1930TCONS_00002290-exon-sc0000019-1510915933:378..1930Clytia hemisphaericaexon
TCONS_00002290-exon-sc0000019-1491911889:2044..2080TCONS_00002290-exon-sc0000019-1491911889:2044..2080Clytia hemisphaericaexon
TCONS_00002290-exon-sc0000019-1491911889:378..1930TCONS_00002290-exon-sc0000019-1491911889:378..1930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:378..2080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0204 9.69853 10.9364 10.0007 0.636435 0.689751 1.7759 2.00009 1.04433 1.24063 1.27908 0.958066 2.02878 2.13358 1.11567 0.981454 1.42069 2.66887 2.65677 1.54208 6.86568 6.1886 6.39901 7.26535 9.5168 7.32405 1.18096 1.64145 1.03505 1.59379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top