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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002290 ID=TCONS_00002290|Name=TCONS_00002290|organism=Clytia hemisphaerica|type=transcript|length=1590bp
AAATTGTTTGACTTGATTCTTAACACATTATAGAAAGATAGCGATATCTT
AACAAGTTAATACATGAAACTCGAGAGGACTGCAACAACATCAAACTGAA
AAAAgtatcattcagtcaaaataaGAGAATCAAAGGATTCTTGGTGGAAG
GAGGGCAATTTTTCAGGCTACACTGAAATATTTTTAGCCTGAAAACACAT
ACAAAAGAAATGTCAACGAAAAAGAACTCAGACTTACATTTAGACTTGCG
TGAGGTATTACGTGACGCCAACCCAAACGCTGAACTATCGTGTGTTGTAC
GTGACCCGAACGGACAGAACATTGATTCAGCAATCGAAGTATCGAGTGCT
CGAGGACGGAATGTGAAATTTTTCCCGAAACTGACCGGCAAACACAGCGT
TTATTTGTATTATGATACAGATTTGGTTCCTGGGTCACCTTTTATCATTG
AGGTATTGCAAAAACCGAAATTGATTAAATGAGTTTGATTGTGGTATATG
GACTTGTATGGATTCGGTTATTTGTGGTGGAGGGCCGATTGTATATTTTA
ATTGTTAAccctttatatttttttcattatttaaatTCATCTTTTATTCT
TGACTAGAAATGAAACAGTGAAGTCTATTCCAATGGCAAATGGCAAAAAT
GACAGTTCGCACTTTTTGGTACTTTGCTCTTGAAGGAAAAAGTACAACAA
CgccttgttggaaagataattttgagtagATGAATTTAAGGGTTTAAGAT
tatcaaaaaattctaaatcgaggatgaaaaatgaagaagaagaaaatgaa
gatttctaCTAGACCGAAATCCTTGATGAATTTATACTTTTCCGAAACTT
TGAACTCCGCCGATTTCAAATACGTATTCAGAAATTTCATNTACTTTTCC
GAAACTTTAAATTTCGCCGATTTCAAATACGTATTCAGAAATTTCATATC
ATTCTAGGAACATCACTTACAGCCATACAAAAAAGGGTGACAGTGACCAA
AAATGGTTTAAGTCTGCCCACTTTGAatagctgtaacttttgaagTAAAA
TGTATCCCTAACTCGGAAGATTTTCTGGTGTGTTCTAAAACGGTTTAAAA
CAATCTGTTAACATACTGTCAGATAATCATAACGATAAAAACCAAGTAAT
TCTTGGCTGCAAAGTTTAAGTGGATAAATCAGAAgctttatttaaatatt
ttcaaaaaatgggcTTTGAACAGTTGTTTTAAGCTAAAAGTTAGCAATAA
TTTGACCCACGTAAGACTCCCACAGTTTAAAATTTACAGCCTTTATTTCA
TAATGGCCAGTAATTATTGTGTTAGCTCTTCTTGTTTTTGCCATTAGGGC
ACTTTTGCTCTCAAATTATTCATATCATATTATTTAAGATGATTATGTAA
GGTAATCCAGGCTATTTTACCCAAACTTCCTACGTAATTTTTCATATAAA
AGATAAGACTGCAAATTTTCATGATCAaccatttttattgtttttcctAC
TAACCAAAtagaattttcttttcttatttattGAAAGCTTGTATATTATA
CATTacataaaaataacattttgttaaaaaatcgaaaaag Run BLAST on NCBI transcript from alignment at sc0000019:378..2080- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002290 ID=TCONS_00002290|Name=TCONS_00002290|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at sc0000019:378..2080- (Clytia hemisphaerica)
AAATTGTTTGACTTGATTCTTAACACATTATAGAAAGGTAAACTCTGTAG
GATTGCTCTTAATTGTAGTTTGAAAAAACTTTACATAAGGAGCATACAAA
ATATTTGTAACCAGATCTGACTTGTGAAAACATTGTTGTTATTTCTTTAG
ATAGCGATATCTTAACAAGTTAATACATGAAACTCGAGAGGACTGCAACA
ACATCAAACTGAAAAAAGTATCATTCAGTCAAAATAAGAGAATCAAAGGA
TTCTTGGTGGAAGGAGGGCAATTTTTCAGGCTACACTGAAATATTTTTAG
CCTGAAAACACATACAAAAGAAATGTCAACGAAAAAGAACTCAGACTTAC
ATTTAGACTTGCGTGAGGTATTACGTGACGCCAACCCAAACGCTGAACTA
TCGTGTGTTGTACGTGACCCGAACGGACAGAACATTGATTCAGCAATCGA
AGTATCGAGTGCTCGAGGACGGAATGTGAAATTTTTCCCGAAACTGACCG
GCAAACACAGCGTTTATTTGTATTATGATACAGATTTGGTTCCTGGGTCA
CCTTTTATCATTGAGGTATTGCAAAAACCGAAATTGATTAAATGAGTTTG
ATTGTGGTATATGGACTTGTATGGATTCGGTTATTTGTGGTGGAGGGCCG
ATTGTATATTTTAATTGTTAACCCTTTATATTTTTTTCATTATTTAAATT
CATCTTTTATTCTTGACTAGAAATGAAACAGTGAAGTCTATTCCAATGGC
AAATGGCAAAAATGACAGTTCGCACTTTTTGGTACTTTGCTCTTGAAGGA
AAAAGTACAACAACGCCTTGTTGGAAAGATAATTTTGAGTAGATGAATTT
AAGGGTTTAAGATTATCAAAAAATTCTAAATCGAGGATGAAAAATGAAGA
AGAAGAAAATGAAGATTTCTACTAGACCGAAATCCTTGATGAATTTATAC
TTTTCCGAAACTTTGAACTCCGCCGATTTCAAATACGTATTCAGAAATTT
CATNTACTTTTCCGAAACTTTAAATTTCGCCGATTTCAAATACGTATTCA
GAAATTTCATATCATTCTAGGAACATCACTTACAGCCATACAAAAAAGGG
TGACAGTGACCAAAAATGGTTTAAGTCTGCCCACTTTGAATAGCTGTAAC
TTTTGAAGTAAAATGTATCCCTAACTCGGAAGATTTTCTGGTGTGTTCTA
AAACGGTTTAAAACAATCTGTTAACATACTGTCAGATAATCATAACGATA
AAAACCAAGTAATTCTTGGCTGCAAAGTTTAAGTGGATAAATCAGAAGCT
TTATTTAAATATTTTCAAAAAATGGGCTTTGAACAGTTGTTTTAAGCTAA
AAGTTAGCAATAATTTGACCCACGTAAGACTCCCACAGTTTAAAATTTAC
AGCCTTTATTTCATAATGGCCAGTAATTATTGTGTTAGCTCTTCTTGTTT
TTGCCATTAGGGCACTTTTGCTCTCAAATTATTCATATCATATTATTTAA
GATGATTATGTAAGGTAATCCAGGCTATTTTACCCAAACTTCCTACGTAA
TTTTTCATATAAAAGATAAGACTGCAAATTTTCATGATCAACCATTTTTA
TTGTTTTTCCTACTAACCAAATAGAATTTTCTTTTCTTATTTATTGAAAG
CTTGTATATTATACATTACATAAAAATAACATTTTGTTAAAAAATCGAAA
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002290-exon-sc0000019-1575043694:2044..2080 | TCONS_00002290-exon-sc0000019-1575043694:2044..2080 | Clytia hemisphaerica | exon |
| TCONS_00002290-exon-sc0000019-1575043694:378..1930 | TCONS_00002290-exon-sc0000019-1575043694:378..1930 | Clytia hemisphaerica | exon |
| TCONS_00002290-exon-sc0000019-1510915933:2044..2080 | TCONS_00002290-exon-sc0000019-1510915933:2044..2080 | Clytia hemisphaerica | exon |
| TCONS_00002290-exon-sc0000019-1510915933:378..1930 | TCONS_00002290-exon-sc0000019-1510915933:378..1930 | Clytia hemisphaerica | exon |
| TCONS_00002290-exon-sc0000019-1491911889:2044..2080 | TCONS_00002290-exon-sc0000019-1491911889:2044..2080 | Clytia hemisphaerica | exon |
| TCONS_00002290-exon-sc0000019-1491911889:378..1930 | TCONS_00002290-exon-sc0000019-1491911889:378..1930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:378..2080 - |
Blast
The following BLAST results are available for this feature:
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