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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002288 ID=TCONS_00002288|Name=TCONS_00002288|organism=Clytia hemisphaerica|type=transcript|length=2309bp
AGCAAGTCAAATTTTATCATATATCATATTCAAATTGtagaaaacctcaa
aatatcAGTTAGTTGAATGCCTGGATTACAACATCTAAAGCATGTTGAAT
CTTGTGAGTAGAGAGCCTCGCTCCCAATTTTGTTTGAAGCGGGATGTcct
atattttttgaattttgaaaaaagagtaCTGCCTTACAGAAGTAAGACTT
TAAAGCAAGTCAAATTTTATCATCAAATTACCTCGTTACCTATCCAAATT
ACCTCTACAAACGCCAAAACTTAAATCTTGGAATTTAAAAAGCTTTGATT
TGTACTGGCATTTCAATAGCACTTGAAATTTATCAAACTTATACCACTTC
CTATGAAAATACTGTTCTTACATTTCCAAAATATTTGTCTAATAATTCAA
CATATCGGTGTATACATTCAAGTGCGATCAACTCATTGTCAGTAGGCTCA
ATTccaacaacaaaatacaaacTTGCATACCGTTTATAGCAAACTTTAGA
ATCTTTGTATTCCAAGAAGCTACACATTTTAGGTTTCCTGGCCAGAATGA
TGGTTAAGAGATCGCGCATgatctttttcttctctttctgtGTGTATGTA
TTATACCATTTTTGTAGACGAACTTTCCCTTGTCTGCTGAACAAAAAGAT
GTACTGCCACTATAATAAAAGATGGTAAATATTTATTAAGGTATTACatt
tacttttatttcatcAGCAGTCAAACTGGATGTATTGTAACAATTCTGTG
TTTGTATCAGTGGGGTATCGGAAAAACTGGAGCTCAATCTTTTCATCAAT
CCTAGAATTCATTTTATTATATGTGTATGTGAATTAAATGTCTTGTGCAA
GAACTTAAGATTGAATGAAGAGAAAATTACTTACCATAGTTTCTAGGCAG
CGTTGATGAAGAAAACAGAATCTTTCACAAGTGTTtttatatttcttaaa
ataaatgCAATACAAAAGTATCTACAAATGCATCAGAACAGTATTAAAGA
TCTGGTGCAGCAGCACCATGAATACTACAGAAAAAAGgaccagtgaagta
gactagaggatatcgccatcttgaatttttttacttttgttttcaaagat
TATATATACATAGACCAAAAAGAAAACATATTTCAAAGCCCCATAAAAGT
TTATTAAACTATattgaaaacatgaaaacacctccaaaatttgaaagaaa
atggtcAACTGATCTCaatttttcgtttgtttttcttcaaaaggGACTGA
ATCTAGTGATATGGATTTGCTACATgctcaagcaaagccaaaaactGGAG
ACAGCTGGACCACTTATCAGCACCATCCAGTCTGCCAAAGGTATTTAGCT
TTCTAATGCTAATCACAACACTTGGAGTTGTATGGAAAAACGCAAATGTC
AAAGTAGGAATTCAAAAAGggttaaaagtttttgaatagagTTCAATTAC
TGTTTTAACCTATCTAGATCAAGTGATTAATTTTTACTATGCGAGGTCAA
CTGGGCTTTTCCCAAAAATAAAGGCCTTGGAAAGGTAAGAAAGGCCAGAT
ATGCACACTCTTACTTTCTTACATCCATCTGCAAACACGTTTTCATCCTC
CCCAGGACTCATCAGTGCGGCTTGGGTTAGCAAGCATAGACTGCTGTTGG
CACCAGAGTGTTGAGCTTTGCTTAAACGCTGGAGGTGAAGGAAGAAGCAG
AGCTTGATCCTCACCGGAGTCTATAGAGCGTAAGTTCTAAGTTCTGAGCG
TAATAAATGATCTATTTTTGATAGAAAATCAAACAATATTCTGACATATT
TGGAATGGGTCTTGACTTCGTACAGGTGAGATCctgtactttttattttt
ggtgtGGAGTTTCTGAAacttttggatttttcaaagctagacttttttag
tcatttttagGTATTTTGAAAGTTGCCAAAGTTGAGTCCTGAGTGAATTT
TGAACCCACACATGAAACATACCTTTGCTTCAGAAGCTCCATACGCTACC
ACTAGATTAGATATTCAATCAAATTCACAAGCTATTTATGAtgtatattt
tacagacccaAATATATTTACATACTAGGGTTAGCCCCAACCCTAGTTAC
AGTACACCTACCACGGGCCTTTAATCCTATGTTTCCATACcaacagtctg
ggaaatcctcttaATTACGACGCGCTTAAACTTTTGAGATCTAAAAGTGC
AATTACACAGTTTTTATCTGTATAATACCAAGAAGTCAGCACCTTTTGAG
GCGTTGCAAAGATTAAAATCTTAAAGAGGTACAAAGAGGTACATGAAAAT
ATGTTCAAG Run BLAST on NCBI transcript from alignment at sc0000019:1053591..1056152+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002288 ID=TCONS_00002288|Name=TCONS_00002288|organism=Clytia hemisphaerica|type=transcript|length=2562bp|location=Sequence derived from alignment at sc0000019:1053591..1056152+ (Clytia hemisphaerica)
AGCAAGTCAAATTTTATCATATATCATATTCAAATTGtagaaaacctcaa
aatatcAGTTAGTTGAATGCCTGGATTACAACATCTAAAGCATGTTGAAT
CTTGTGAGTAGAGAGCCTCGCTCCCAATTTTGTTTGAAGCGGGATGTcct
atattttttgaattttgaaaaaagagtaCTGCCTTACAGAAGTAAGACTT
TAAAGCAAGTCAAATTTTATCATCAAATTACCTCGTTACCTATCCAAATT
ACCTCTACAAACGCCAAAACTTAAATCTTGGAATTTAAAAAGCTTTGATT
TGTACTGGCATTTCAATAGCACTTGAAATTTATCAAACTTATACCACTTC
CTATGAAAATACTGTTCTTACATTTCCAAAATATTTGTCTAATAATTCAA
CATATCGGTGTATACATTCAAGTGCGATCAACTCATTGTCAGTAGGCTCA
ATTccaacaacaaaatacaaacTTGCATACCTAAAATTTCAGAGGGAAAA
ATTACATAGATATAAAAGGATAAGTTTTGTCAGATACTCTTTATTGAGGG
GCCATTAGCCTGAACTGTGAACAGTTGTATTATGTTTTGTAGGACCCTCT
TAGGATGAAAAGAGGGGTAACCCAGAAAGTTTAAATATGATAAGGTGAAA
AGGGGCTGatataagaaatttttaaatcatttcaaaaatctATTCCTTCA
AAGTGTTtataaaatgaacaaattttaacATACCGTTTATAGCAAACTTT
AGAATCTTTGTATTCCAAGAAGCTACACATTTTAGGTTTCCTGGCCAGAA
TGATGGTTAAGAGATCGCGCATgatctttttcttctctttctgtGTGTAT
GTATTATACCATTTTTGTAGACGAACTTTCCCTTGTCTGCTGAACAAAAA
GATGTACTGCCACTATAATAAAAGATGGTAAATATTTATTAAGGTATTAC
atttacttttatttcatcAGCAGTCAAACTGGATGTATTGTAACAATTCT
GTGTTTGTATCAGTGGGGTATCGGAAAAACTGGAGCTCAATCTTTTCATC
AATCCTAGAATTCATTTTATTATATGTGTATGTGAATTAAATGTCTTGTG
CAAGAACTTAAGATTGAATGAAGAGAAAATTACTTACCATAGTTTCTAGG
CAGCGTTGATGAAGAAAACAGAATCTTTCACAAGTGTTtttatatttctt
aaaataaatgCAATACAAAAGTATCTACAAATGCATCAGAACAGTATTAA
AGATCTGGTGCAGCAGCACCATGAATACTACAGAAAAAAGgaccagtgaa
gtagactagaggatatcgccatcttgaatttttttacttttgttttcaaa
gatTATATATACATAGACCAAAAAGAAAACATATTTCAAAGCCCCATAAA
AGTTTATTAAACTATattgaaaacatgaaaacacctccaaaatttgaaag
aaaatggtcAACTGATCTCaatttttcgtttgtttttcttcaaaaggGAC
TGAATCTAGTGATATGGATTTGCTACATgctcaagcaaagccaaaaactG
GAGACAGCTGGACCACTTATCAGCACCATCCAGTCTGCCAAAGGTATTTA
GCTTTCTAATGCTAATCACAACACTTGGAGTTGTATGGAAAAACGCAAAT
GTCAAAGTAGGAATTCAAAAAGggttaaaagtttttgaatagagTTCAAT
TACTGTTTTAACCTATCTAGATCAAGTGATTAATTTTTACTATGCGAGGT
CAACTGGGCTTTTCCCAAAAATAAAGGCCTTGGAAAGGTAAGAAAGGCCA
GATATGCACACTCTTACTTTCTTACATCCATCTGCAAACACGTTTTCATC
CTCCCCAGGACTCATCAGTGCGGCTTGGGTTAGCAAGCATAGACTGCTGT
TGGCACCAGAGTGTTGAGCTTTGCTTAAACGCTGGAGGTGAAGGAAGAAG
CAGAGCTTGATCCTCACCGGAGTCTATAGAGCGTAAGTTCTAAGTTCTGA
GCGTAATAAATGATCTATTTTTGATAGAAAATCAAACAATATTCTGACAT
ATTTGGAATGGGTCTTGACTTCGTACAGGTGAGATCctgtactttttatt
tttggtgtGGAGTTTCTGAAacttttggatttttcaaagctagacttttt
tagtcatttttagGTATTTTGAAAGTTGCCAAAGTTGAGTCCTGAGTGAA
TTTTGAACCCACACATGAAACATACCTTTGCTTCAGAAGCTCCATACGCT
ACCACTAGATTAGATATTCAATCAAATTCACAAGCTATTTATGAtgtata
ttttacagacccaAATATATTTACATACTAGGGTTAGCCCCAACCCTAGT
TACAGTACACCTACCACGGGCCTTTAATCCTATGTTTCCATACcaacagt
ctgggaaatcctcttaATTACGACGCGCTTAAACTTTTGAGATCTAAAAG
TGCAATTACACAGTTTTTATCTGTATAATACCAAGAAGTCAGCACCTTTT
GAGGCGTTGCAAAGATTAAAATCTTAAAGAGGTACAAAGAGGTACATGAA
AATATGTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002288-exon-sc0000019-1491911889:1053591..1054066 | TCONS_00002288-exon-sc0000019-1491911889:1053591..1054066 | Clytia hemisphaerica | exon |
| TCONS_00002288-exon-sc0000019-1510915933:1053591..1054066 | TCONS_00002288-exon-sc0000019-1510915933:1053591..1054066 | Clytia hemisphaerica | exon |
| TCONS_00002288-exon-sc0000019-1575043694:1053591..1054066 | TCONS_00002288-exon-sc0000019-1575043694:1053591..1054066 | Clytia hemisphaerica | exon |
| TCONS_00002288-exon-sc0000019-1491911889:1054320..1056152 | TCONS_00002288-exon-sc0000019-1491911889:1054320..1056152 | Clytia hemisphaerica | exon |
| TCONS_00002288-exon-sc0000019-1510915933:1054320..1056152 | TCONS_00002288-exon-sc0000019-1510915933:1054320..1056152 | Clytia hemisphaerica | exon |
| TCONS_00002288-exon-sc0000019-1575043694:1054320..1056152 | TCONS_00002288-exon-sc0000019-1575043694:1054320..1056152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:1053591..1056152 + |
Blast
BLAST of TCONS_00002288 vs. Swiss-Prot (Human)
Match: AP1S2 (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.585e-38 Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = -1
Query: 372 QYIFLFSRQGKVRLQKWYNTYTQKEKKKIMRDLLTIILARKPKMCSFLEYKDSKVCYKRYASLYFVVGIEPTDNELIALECIHRYVELLDKYFGN 656
Q++ LFSRQGK+RLQKWY + KEKKKI R+L+ +LARKPKMCSFLE++D K+ YKRYASLYF IE DNELI LE IHRYVELLDKYFG+
Sbjct: 2 QFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGS 96
The following BLAST results are available for this feature:
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