TCONS_00002284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002284
Unique NameTCONS_00002284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002284 ID=TCONS_00002284|Name=TCONS_00002284|organism=Clytia hemisphaerica|type=transcript|length=1297bp
NAATACAATCTATATAAGTCTCAAAGGTTTTCAATTCAAATCTCAAATCA
ATGTATGACGATATATTCCCCAATGACGGGTAGGAATTATTCGTGAATTT
GTATCCTCAAATCTCAAATCAAATGTGTGACGATATATCCCCCCAATGAC
GGATAGGAATTATTCGTAAATGTGTATCCTCAAATCTCAAATCAATTTGT
ATGACGATATATCCCCCAATGACGGATAGGAATTATTCGTAAATTTGTAT
CCTCAAATCTCAAATCAAATTGTGTGACGATATATCCCCAAATGACGGAT
AGGAATTATTCGTAAATTTGTATCcaaagttttccaattttcgATACAAT
CTATAAGTCTCAAAGGTTTTCAATTCAAATCTCAATTCGATGTATGACGA
TATATTCCCCAATGACGGGTAGGAATTATTCGTGAATTTGTATCCAAACT
TCTCCAATTTTCGATACAATCTAAatctcaaaagttttcaaattcaaatc
tcAAATCAATGTGTGACGATATATTCCCCCAATGACGGATAGGAATTATT
CGTAAATTTGTATCCAAAGTTCTCCAATTTTCGATAAATTCCAAATCTCA
AAAGTATCTAAATCAAATGTAAATCCATAAATCGTATCCGTGTGAGTTCC
AAGTTCAACAGCATAAGTTCAATCaataaatatttcattaaatttccaNA
AGTTCCAGTAAAGTTTCCCAATTTTGACGATTCAAAATTTCTTGCTTTCT
AAATACGTACAATTCTCAACGTTCAAGTAACTAATTTTCGATATATTCTT
TAGTCGTAGGggccaaatttccaatggggcCGAGAAAATATCAAACTTTG
TTCCCGTTCGTTAAGTCGTAAATCTCAAATTCTCAATCAAGTCTGAAGTA
TCCAAATCATGTGTAACTCCAAAGTTCTCAAATCCTAAATCAAATGTGTA
AAGATCAAATTCTCAAATCAAATGTGTGACGATATATTCCCCAATGACGG
ATAGGAATTATTCGTAAATTTGNAAAAACTTTTATACCAGATTCATATCC
GGTTCGTTTGGACCAAATGTCCGAAACGAAATAAATGGAGGACTATATAT
TTCTATTAGATGTTGCTTCTTCTCTTTCTAGTTTCGTACTAATCATAAAT
TACAAATGTCGCGCTATTTATATATCCACGTGACCCTACTGCTCACGTGG
TCAAACTGTCAATCATAATTTCTATTCCACGACATTCCCCCCGAAAATAT
AAATCACAACACTCACCCTGCCAAAATAATCTAAGTTCCTATAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000019:965170..966580+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002284 ID=TCONS_00002284|Name=TCONS_00002284|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at sc0000019:965170..966580+ (Clytia hemisphaerica)
NAATACAATCTATATAAGTCTCAAAGGTTTTCAATTCAAATCTCAAATCA
ATGTATGACGATATATTCCCCAATGACGGGTAGGAATTATTCGTGAATTT
GTATCCTCAAATCTCAAATCAAATGTGTGACGATATATCCCCCCAATGAC
GGATAGGAATTATTCGTAAATGTGTATCCTCAAATCTCAAATCAATTTGT
ATGACGATATATCCCCCAATGACGGATAGGAATTATTCGTAAATTTGTAT
CCTCAAATCTCAAATCAAATTGTGTGACGATATATCCCCAAATGACGGAT
AGGAATTATTCGTAAATTTGTATCcaaagttttccaattttcgATACAAT
CTATAAGGTTTTCAATTCAAATCTCAAATAAATGTATGGCGATATATTCC
CCAATGACGGGTAGGAATTATTCGTGAATTTGTATCCAAACTTATCCAAT
TTTCGATACAATCTATATAAGTCTCAAAGGTTTTCAATTCAAATCTCAAT
TCGATGTATGACGATATATTCCCCAATGACGGGTAGGAATTATTCGTGAA
TTTGTATCCAAACTTCTCCAATTTTCGATACAATCTAAatctcaaaagtt
ttcaaattcaaatctcAAATCAATGTGTGACGATATATTCCCCCAATGAC
GGATAGGAATTATTCGTAAATTTGTATCCAAAGTTCTCCAATTTTCGATA
AATTCCAAATCTCAAAAGTATCTAAATCAAATGTAAATCCATAAATCGTA
TCCGTGTGAGTTCCAAGTTCAACAGCATAAGTTCAATCaataaatatttc
attaaatttccaNAAGTTCCAGTAAAGTTTCCCAATTTTGACGATTCAAA
ATTTCTTGCTTTCTAAATACGTACAATTCTCAACGTTCAAGTAACTAATT
TTCGATATATTCTTTAGTCGTAGGggccaaatttccaatggggcCGAGAA
AATATCAAACTTTGTTCCCGTTCGTTAAGTCGTAAATCTCAAATTCTCAA
TCAAGTCTGAAGTATCCAAATCATGTGTAACTCCAAAGTTCTCAAATCCT
AAATCAAATGTGTAAAGATCAAATTCTCAAATCAAATGTGTGACGATATA
TTCCCCAATGACGGATAGGAATTATTCGTAAATTTGNAAAAACTTTTATA
CCAGATTCATATCCGGTTCGTTTGGACCAAATGTCCGAAACGAAATAAAT
GGAGGACTATATATTTCTATTAGATGTTGCTTCTTCTCTTTCTAGTTTCG
TACTAATCATAAATTACAAATGTCGCGCTATTTATATATCCACGTGACCC
TACTGCTCACGTGGTCAAACTGTCAATCATAATTTCTATTCCACGACATT
CCCCCCGAAAATATAAATCACAACACTCACCCTGCCAAAATAATCTAAGT
TCCTATAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001210XLOC_001210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002284-exon-sc0000019-1491911889:965170..965526TCONS_00002284-exon-sc0000019-1491911889:965170..965526Clytia hemisphaericaexon
TCONS_00002284-exon-sc0000019-1510915933:965170..965526TCONS_00002284-exon-sc0000019-1510915933:965170..965526Clytia hemisphaericaexon
TCONS_00002284-exon-sc0000019-1575043694:965170..965526TCONS_00002284-exon-sc0000019-1575043694:965170..965526Clytia hemisphaericaexon
TCONS_00002284-exon-sc0000019-1491911889:965641..966580TCONS_00002284-exon-sc0000019-1491911889:965641..966580Clytia hemisphaericaexon
TCONS_00002284-exon-sc0000019-1510915933:965641..966580TCONS_00002284-exon-sc0000019-1510915933:965641..966580Clytia hemisphaericaexon
TCONS_00002284-exon-sc0000019-1575043694:965641..966580TCONS_00002284-exon-sc0000019-1575043694:965641..966580Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:965170..966580 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225603	0.427816	0	0	3.6994	0.490884	4.42076	3.57914	0.766386	1.766	1.50974	0.512115	2.59178	4.13111	8.90334	7.07996	3.35152	1.59861	2.07947	1.95808	3.90689	2.2479	1.72905	1.1999	0.825661	0.833115	2.36609	2.34546	1.37306	0.829644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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