TCONS_00002271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002271
Unique NameTCONS_00002271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002271 ID=TCONS_00002271|Name=TCONS_00002271|organism=Clytia hemisphaerica|type=transcript|length=835bp
TGTTAATTAGTGCTAATGCGAAAGGATATccagaagaaaaagaaacattG
TTGAAGAAAGATAAACGATTCAGTTACACAAAAACCGTCATTGGAGTATC
GCAGAAAAACAATACAGCACCACctctcgaaacaaaatggcAAGTCCTTG
TCAATCCAAATATAACTACGTATCAAATTCGGATTTATTTCAACAACTTA
GAGCTGNCTTGTCAATCCAAATATAACTACTTATCAAATTCGGATTTATT
TCAACAACTTAGAGCTGGCTACTATCAAAGATTCCAAAATCACGATTCTA
AGAAAACCGTTACTTTACCTTGGGAATGATTTAGCGATCGATTCTTTGGG
AAATCAAACTTTCCAAATGATGCTGAATATGTATCGAATGCCAGTTTTAT
ACCGTATAGTTGGACTTCATGAGAATATCACCTATAAAGTTCGATATTCT
GACCAGATTAACGAGGTGAAGTACGTGACACAAATTGACTACACTTGCAA
AACTAGGCCTTTACAAgGGTTACATGAATCTGGTTCTCCTTATCCTTGCT
CAAGTATTCTGTATTCTCATGATTTTCCCAAAGCTATATTTGCTGGTAGT
TTGTTATGCTTTCTGGTGATTTTGTCATGTTTTATTTTGTGGATTCTCAG
AGGACAGAAGAGAATGTTCCGTAAGAAACACACTACACTTCGAAAGAAAG
GTCATCACAGATCAATCCTTACTTCAACTGTCAGCGATACTCGATCAGGT
TCAATTGATAGTTCAGCATCAGGAATTGTTGGCATCTTGAAACCGCCTTC
AACACCAAAACCAAATGACgataagaaaaacaaca
Run BLAST on NCBI

protein sequence of TCONS_00002271-protein

>TCONS_00002271-protein ID=TCONS_00002271-protein|Name=TCONS_00002271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MMLNMYRMPVLYRIVGLHENITYKVRYSDQINEVKYVTQIDYTCKTRPLQ
GLHESGSPYPCSSILYSHDFPKAIFAGSLLCFLVILSCFILWILRGQKRM
FRKKHTTLRKKGHHRSILTSTVSDTRSGSIDSSASGIVGILKPPSTPKPN
DDKKNN
Run BLAST on NCBI

transcript from alignment at sc0000019:711028..714043+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002271 ID=TCONS_00002271|Name=TCONS_00002271|organism=Clytia hemisphaerica|type=transcript|length=3016bp|location=Sequence derived from alignment at sc0000019:711028..714043+ (Clytia hemisphaerica)
TGTTAATTAGTGCTAATGCGAAAGGTAACTGTTTTTAACTTAATTAATTG
TATTCATTAAGCTGTAATTGATGATAATTGAAATAGCCTTTAGCATAAAC
CACAGAATCCCGAACGTCAAATAAGCTTCATAGAACGGTATAGCATGATG
TCCTTTAAACATGGTCATAACGAGGATCAGATTGGTTGTCTAGTAATAGA
AATTAGATTAGATAACTGCCCCCTCCGCTCCTCAGCGGCTGATTTTTAGG
GCGGGTGACAGACAAAGATTACGACTTCCGACGCTTCTATGCTTTTATAC
ACCTTAAAATGAGAAGTATTTAGCCAAAAAAGAAATAAGACTCCATTTGT
TCGCAGAAATTTTACTAATATAATATATAGTATTTTACTTAATATTTCTT
AATCGAACCACCACGCCCTTGTTTCTGTTTTCGTGTTCATGGGTTTTTTT
AGGGTTGACCTAAAGTTTTTGTtcttaaataagagtgatattgtttgctt
actcatcacttttaattcacaagctttttcacattggattgacacaaatg
tggagcaagattggtcagaaaaaggaaaagaaaaacatatttttgcttac
tgtatatcagcataatataacaatagacctgatatgaaacggggacACTT
ATGTAAAAGCAAAACCTTTAAGGGCAACAAGAAGgctttatattttcttg
attATACCCAACTCTCCTCTCTTTAGAACGCATTAAGATTTTCAACTCTA
CAACACACTCAAAAAACATCCCAAAATTTTTCCAGTCCTTTCCCATCCTG
GAATAACTCTCCAAATGAGGAAGGGTTATCCAAAAGACATACAATCTAGG
GACTACTATTTTTTAGGATATccagaagaaaaagaaacattGTTGAAGAA
AGATAAACGATTCAGTTACACAAAAACCGTCATTGGAGTATCGCAGAAAA
ACAATACAGCACCACctctcgaaacaaaatggcAAGTCCTTGTCAATCCA
AATATAACTACGTATCAAATTCGGATTTATTTCAACAACTTAGAGCTGNC
TTGTCAATCCAAATATAACTACTTATCAAATTCGGATTTATTTCAACAAC
TTAGAGCTGGCTACTATCAAAGATTCCAAAATCACGATTCTAAGAAAACC
GTTACTTTACCTTGGGAATGATTTAGCGATCGATTCTTTGGGAAATCAAA
CTTTCCAAATGATGCTGAATATGTATCGAATGCCAGTTTTATACCGTATA
GTTGGACTTCATGAGAATATCACCTATAAAGTTCGATATTCTGACCAGAT
TAACGAGGTGAAGTACGTGACACAAATTGACTACACTTGCAAAACTAGGC
CTTTACAAggtaattacacgttttttcatatATAGtaggggccaagcctg
gggttccgtgacatcttttttacgacctagccatttttagtctattgcaa
agaacagtatattacgagacattagcgagtttatgtatgtgtgtttttca
gcgacggagacggtaaggttctaatttgagtagatcctgaccagctgagg
acaacggtaaatcagcacttttaccgtcctcgattttgcggggcggaact
gcgggtttttccgaatcgcttcagtcactctaccgtcctcaaaagtgcaa
atacataaactcggtatttttgagagggaggacgcggataaggcccggga
aaactttttatgaccaaaatagtgacgccacaTGCAAATCTGCAAGGGAA
ATgaggggtagagaaatagcttttttcaaaagtcaaaataaacgaagatg
attggtaccatctgatagagcatgaaattctgagcaaacaatgtattaca
acaactctctgactaaaacacacaaaggaatacagccgctttaagaccaa
ctgactgtcagctctactgtgatttagcgcgtcaaatcttgtcttaatcg
tactgacgtcggtatgttttttgCAATTTCCTGAGAAAAAggttgtttta
gagtccataacccctttaaattgttcttaacttggtatttttggccatcg
aaatCTTATGACCACAAGTTTGCTGTTTGCTGTTATAAAAAGACGTCTCC
CATTTATATcatgaaaaaagaatattttaaattcAGTATTTTGTTGCAAT
CTTTTAAATATTCAGcttttattatttcttttagGGTTACATGAATCTGG
TTCTCCTTATCCTTGCTCAAGTATTCTGTATTCTCATGATTTTCCCAAAG
CTATATTTGCTGGTAGTTTGTTATGCTTTCTGGTGATTTTGTCATGTTTT
ATTTTGTGGATTCTCAGAGGACGTAAGTATTGTTTTCTTATTTGTGAGCT
TTTGATAGCATTCGACTTTGCAGCCTTTTCGAATGCCAGGAGCCAAAGTT
TTAATCAAAACTTTATTGTAAAAATAGGAGAGGGTAGATTATGCTTCGTA
ATccaaacccttggaaaaaaaagACTCAAACTGAACACTCTggaagaaat
gaaagaaacattCATTGCACTCCATGTAAATTCTTCTTTGATTACCCGCT
GGAAATGTGTACTTTCGACCCCTGTCTGTATAGATATCAAAGGGAATGGC
CTTTTCTTAGTATCGAAAGTTTCCATTTCTGGCACATCTTGGCCACGCAA
TGACGTCAAAACAATGACTTGCATGCCTCCTCAAAACTTACTCTTCTAGC
GCCCGAGTATGGATATCGAAGTAAAATGACCCATTTTAAGCAtcgaaagt
ttttatttctgataCATCTTGAAACGCGGATCACAAGCCTCCCCCCCCCt
cccaaaaaaaacttaaaatctcCTTCCATATTTCAGAGAAGAGAATGTTC
CGTAAGAAACACACTACACTTCGAAAGAAAGGTCATCACAGATCAATCCT
TACTTCAACTGTCAGCGATACTCGATCAGGTTCAATTGATAGTTCAGCAT
CAGGAATTGTTGGCATCTTGAAACCGCCTTCAACACCAAAACCAAATGAC
gataagaaaaacaaca

Coding sequence (CDS) from alignment at sc0000019:711028..714043+

>TCONS_00002271 ID=TCONS_00002271|Name=TCONS_00002271|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0000019:711028..714043+ (Clytia hemisphaerica)
ATGATGCTGAATATGTATCGAATGCCAGTTTTATACCGTATAGTTGGACT
TCATGAGAATATCACCTATAAAGTTCGATATTCTGACCAGATTAACGAGG
TGAAGTACGTGACACAAATTGACTACACTTGCAAAACTAGGCCTTTACAA
gGGTTACATGAATCTGGTTCTCCTTATCCTTGCTCAAGTATTCTGTATTC
TCATGATTTTCCCAAAGCTATATTTGCTGGTAGTTTGTTATGCTTTCTGG
TGATTTTGTCATGTTTTATTTTGTGGATTCTCAGAGGACAGAAGAGAATG
TTCCGTAAGAAACACACTACACTTCGAAAGAAAGGTCATCACAGATCAAT
CCTTACTTCAACTGTCAGCGATACTCGATCAGGTTCAATTGATAGTTCAG
CATCAGGAATTGTTGGCATCTTGAAACCGCCTTCAACACCAAAACCAAAT
GACgataagaaaaacaacATGATGCTGAATATGTATCGAATGCCAGTTTT
ATACCGTATAGTTGGACTTCATGAGAATATCACCTATAAAGTTCGATATT
CTGACCAGATTAACGAGGTGAAGTACGTGACACAAATTGACTACACTTGC
AAAACTAGGCCTTTACAAgGGTTACATGAATCTGGTTCTCCTTATCCTTG
CTCAAGTATTCTGTATTCTCATGATTTTCCCAAAGCTATATTTGCTGGTA
GTTTGTTATGCTTTCTGGTGATTTTGTCATGTTTTATTTTGTGGATTCTC
AGAGGACAGAAGAGAATGTTCCGTAAGAAACACACTACACTTCGAAAGAA
AGGTCATCACAGATCAATCCTTACTTCAACTGTCAGCGATACTCGATCAG
GTTCAATTGATAGTTCAGCATCAGGAATTGTTGGCATCTTGAAACCGCCT
TCAACACCAAAACCAAATGACgataagaaaaacaacATGATGCTGAATAT
GTATCGAATGCCAGTTTTATACCGTATAGTTGGACTTCATGAGAATATCA
CCTATAAAGTTCGATATTCTGACCAGATTAACGAGGTGAAGTACGTGACA
CAAATTGACTACACTTGCAAAACTAGGCCTTTACAAgGGTTACATGAATC
TGGTTCTCCTTATCCTTGCTCAAGTATTCTGTATTCTCATGATTTTCCCA
AAGCTATATTTGCTGGTAGTTTGTTATGCTTTCTGGTGATTTTGTCATGT
TTTATTTTGTGGATTCTCAGAGGACAGAAGAGAATGTTCCGTAAGAAACA
CACTACACTTCGAAAGAAAGGTCATCACAGATCAATCCTTACTTCAACTG
TCAGCGATACTCGATCAGGTTCAATTGATAGTTCAGCATCAGGAATTGTT
GGCATCTTGAAACCGCCTTCAACACCAAAACCAAATGACgataagaaaaa
caac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001203XLOC_001203Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002271-proteinTCONS_00002271-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002271-exon-sc0000019-1491911889:711028..711051TCONS_00002271-exon-sc0000019-1491911889:711028..711051Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1510915933:711028..711051TCONS_00002271-exon-sc0000019-1510915933:711028..711051Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1575043694:711028..711051TCONS_00002271-exon-sc0000019-1575043694:711028..711051Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1491911889:711894..712386TCONS_00002271-exon-sc0000019-1491911889:711894..712386Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1510915933:711894..712386TCONS_00002271-exon-sc0000019-1510915933:711894..712386Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1575043694:711894..712386TCONS_00002271-exon-sc0000019-1575043694:711894..712386Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1491911889:713212..713349TCONS_00002271-exon-sc0000019-1491911889:713212..713349Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1510915933:713212..713349TCONS_00002271-exon-sc0000019-1510915933:713212..713349Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1575043694:713212..713349TCONS_00002271-exon-sc0000019-1575043694:713212..713349Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1491911889:713864..714043TCONS_00002271-exon-sc0000019-1491911889:713864..714043Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1510915933:713864..714043TCONS_00002271-exon-sc0000019-1510915933:713864..714043Clytia hemisphaericaexon
TCONS_00002271-exon-sc0000019-1575043694:713864..714043TCONS_00002271-exon-sc0000019-1575043694:713864..714043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:711028..714043 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.305711	0	0.145726	0.0682135	0	0.0591558	0	0.0377444	0.113076	0	15.0286	1.62316	0	0	0	0	0	0	0	0	0.0608481	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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