TCONS_00002268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002268
Unique NameTCONS_00002268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002268 ID=TCONS_00002268|Name=TCONS_00002268|organism=Clytia hemisphaerica|type=transcript|length=1679bp
CCCGAAACAGATGAAAAATAGAGGGCAAGGATTCAACATGTTACAAATAC
TACTCACCCTGTTTTTGTTGATATCCACTATAACCTGTGGAGAAGTGGAG
GAAAACCTTTTGGACATTTATCAAAAGCAATTGATGAATGATGATTTCGA
TCCTGAAGGTTATGTTGAAGTtgaagatgacgtcatcgtGGATCCCGaag
atatcaatgataattttgaaatcttgaagGAACATCCAAATATTGATGAA
TTACACCAAGCTTTGCTGAAAATCTGTTCAAGTGTGTTGGATAGAGAACC
AAATCTCCTCAAAGGTATgaaaaagcattcaaaaatctttgaagttggca
aaatacttttgaaaagtggcttcaagaaattgaaaacaaataaacaatTA
ATGAAAGGTAAATCCTATCTTTCCAAAATATGCAAAAGTTTATTGAATGG
TGGTTCAAGTAAAAAACACACGAATCCAAACAATAACAAGTTAGGATCGA
GTCATGAAGGGTTCAATATGGATAAACACGTGTTGAGTGTTGGCAAAAAG
ATGTTCAGGATGTTTAGAAAGATATGGAAAAGTGGTCAccgaaaaatttt
cgaaaatcggcaCAACGGGTTGAAAAGTGGTCACAAGATGTTCAAAAGTG
gtcacaaaatgttgaaaatgggCAAAAACAAGTTGAATCACCTCACACCA
CAGCTGACGAAGGAATACACCAACTTACTGACAAAGTATCCAACACTTTT
GAAGATGAATTCCCATATACTAAACATCAATAAAAACCCACTTGATTTAC
TTAAAATTTGTCTGGATTTTTAAAGTAACTTGATTGCGTTTTATATCCAT
CCTATACATCCATCCCCAAAGAAATGACTAGAAGCACAGCGTTAGAATGA
CTTTATtagaaaaaaggttttgttgGTTTCTGAGGGGTATATTAGATTCG
TCAAATTATGGGTGTGTGCCACCtgctttttgaaaatctaaaagaaGATT
GGTCAAATATCGAATTTTGGGATCCATGCCCGtactttaaccaaaatttt
ggcttttataatgaaaataatttttttctagatctttttccttttttgta
acCCTGCGGAATATTGAAATTAGTTAGTCTGTTAGTTTGACGACCCTTGG
CACGATTTCCAAGGTCCGGAAAAGACCCGGTGGAGGGGTTCTTTGACAAA
AAGGGGTGTGGGATGTGCCACTGGTCAAGCCAACTTTTTCACCTCCACCA
CGTAGAGTtgcaaaacaccaaaataaagAAATGAGTCCTTCGTAGGGTac
gtttttttgagattttgtgaaaaaagtagaaaattttgagaaattttgcg
AGCTTtagtccatttttcgaacttcagcggcacacccccgtcggttggca
agggtagtaccccccatGGGCGAAAAAGACACATATCTTAAAGGCTAATT
TTCTTATGTGACCTTCCCTCGAGTGTTGATTCCTTTGATAAAATAATATC
AGAGACTTCAAAGCTGCTTTGGGAAACTCGTACATCACTCTTAAAAGCAG
TTTAAACTAGTGTTTCCTTGGCACCATTCTCTGCTCCTTACAGAAAGAAT
TTGCTATGAGAATTTTGATGAATTGTAATTGATCGTTGAATTTTTTCTGT
TTACATAACTAACTACCATTACAACAACC
Run BLAST on NCBI

protein sequence of TCONS_00002268-protein

>TCONS_00002268-protein ID=TCONS_00002268-protein|Name=TCONS_00002268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
PKQMKNRGQGFNMLQILLTLFLLISTITCGEVEENLLDIYQKQLMNDDFD
PEGYVEVEDDVIVDPEDINDNFEILKEHPNIDELHQALLKICSSVLDREP
NLLKGMKKHSKIFEVGKILLKSGFKKLKTNKQLMKGKSYLSKICKSLLNG
GSSKKHTNPNNNKLGSSHEGFNMDKHVLSVGKKMFRMFRKIWKSGHRKIF
ENRHNGLKSGHKMFKSGHKMLKMGKNKLNHLTPQLTKEYTNLLTKYPTLL
KMNSHILNINKNPLDLLKICLDF
Run BLAST on NCBI

transcript from alignment at sc0000019:682265..696068+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002268 ID=TCONS_00002268|Name=TCONS_00002268|organism=Clytia hemisphaerica|type=transcript|length=13804bp|location=Sequence derived from alignment at sc0000019:682265..696068+ (Clytia hemisphaerica)
CCCGAAACAGATGAAAAATAGAGGGCAAGGATTCAACATGTTACAATAAC TACTCACCCTGTTTTTATTGATATCCACTACAACATGTAAGTAAAATATT ACTGTTAAATGGGGTTGCAACGAATTTGAAAATCTGCTTTGTGTAGAGAG ATGTCAcaattacttttattttttatccaTCGGGTCAAATACTTTTCATG CTCCTTGGGGCACGAGGTTCAACCCCTTAATCTAaatgttttttaggttt tttggaAACATTTTGAAACAGAAATTGAGAAAGGGAATTGTCAATTGGTC CCACTTGCTGAAAAATCACAGGGGTGTATGAGCTTCCGTTTCAGTGACGT TCgtggtattttttttttgttatttcatTCGATTTTTAGGGTTAAAGCTT TTAGGATAGCGAATGAATTTCTGAGATCAGTTCAGAAATTACGAATtcga aatatttattcaatcaaatttaatcattgattgacttcaaaatatgtcaa GAAAAGCAGCAAAATATAGCACATTTTAAGGTCTACTAACAAACacttat tgcccccgcaggagcgtagcgacgaggaggcactcatagtttcacgcata gatattggactggaatctcgaaattttgttgcgcgttttgtcgcccaagc atccccgtagttagtctcttccgtataTGTTCGGTTTTctccgggacggt agtatacatattatacgttatatgctattaccattattacatattacaat tttagttttgatttagctttgaaaagctaaagcgagtgttataaatgcaa atcataacagtgtatgatataacacgaattacaatattacttgtgcaaat caaaacaaacaaaatggcagactggttataatgatgagctgattcattga ctggaaaaagtgtttcctatgtcaaattttgtttcttgtctttgaaactg aatactaactactgtaatttagtcagaagtccacttcagcaatgatttca attctttttccggaatctttaatgaaatttgctcaagttttcaaatgtat atttgatattttttgttcaaactctaatttatcttttattttactaataa ctacctttattgtttatatagCTTCTtcagctttaaataccatcatatgg tcgtaacttgagaaagtacaaaaaagttgaatgtatgcatatgtaaagtt gaatccaaaagtggttgaaaatgaacgttgaatgtcaatcaacgtaaaca aactttttctgttGGTCTTCAAagtagatttacctcacttagagtttttt cactgttttttcagtgtggtaaatctatttcaaaaacctgaaaaaagttt gtttacatccgtttaactttacatgcgcacattcaactttttcatgcagt tttgatagcctaaataacttacgctccagtggtttggtgaaatagctcca attctggctttccaagttaagatggaccttcccgaaggcatttaacggtg gttagactaggtacacagacagtcatacagaaacaccataaagtgaaagt atatatagctataaactcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNACGCAAGTGgaggccgggccttaactaggattagtttctatttcac cctatttaagatggcgcagaactttttaataaatttcatacacagtatcc tcttgactattgtttattaggcaaagttgcaatagaaaattgttgaaata tagcagccaatggaaaaacaagctatttctgattggttacattgttgatt tattcaccactatatattttgcctacaatctaagatgtctgtggcactat cagaaaaggtctatttagtgaataataatcacgatatatattgttgtaag aaagaaactaggagaaaaaaacaaacaggagatgtgaaaacctgtaagct aatgataccataattttttaaatgtatatttttgagaagcttttccagct tttccttaaattttattaaattatcaagctgcgaattcttcaactatttt gttaatggaatatagttattttttcaagcaaatgcctcaatcaatcaatc aatcaatcaatcaatcaatcaatcaaccaaccaaccaatcaatcaataat taaatcaatcaattattcctgattgtttttttaatgttttaatctttaat ggcataaaaaagcattaaagctttataagtgcttgacatgatctttatgt gggggtatttagtgaaagctatgactagttaatGTAACCATAGCCTGAGT GTCACAGAGTCAGACGTGATATCTAATCTCCGttcaacgagttttcacta caCTTATACAAACGCCTGATTGCAAACAACTCTCGTTGTGGCTCGTTTTA TCACATTCAACCAGATTCTAGAATTTTATCTCGCAGTCAAAACGACAATT TTTGGTTTCTATTTGTTTCGATAAAAGAACACGTTccaaagaaagagaaa aagtgtGACATGTTTAATTGCTCTTGGGAATAACGTAGAATTTATCATCG TTGTCTTTCagaacaaaatatttctattgcCTTGGGATTACAAAAAGTCT TCGGCAAAGGCGAGCATGGAACCTTGGTTGAAGTAACCatatctttatta ttttttgaaaatattttcacaatagtgataatctttttttctaaattata tttttcaaattgtatCAGAATATAGGGCGTTTTTACATTTGGAATTTTAC AATCGAAaaattatattcttataaaaaacaacgaatAAATAACTGAATCC GATTCGCTTTAAAAGCATACAGTGGCATATCTAAAAAAAGACATCGATTa ttctgtttgaccgaaattcaatcccatcaccctttgcgTTTATTACGCTT GCACTTAAGTTACGCTCAATTACAAAGAAGAAGTAATAATTGGAATTCGG TATAATCAGAGAAGTGATaatcatgacgtttgcataacTAAGCGCTATTG GACACAAATTATATGTGCTTGCATTCTTTCAACCAGTGCTACAAATTATC AaccgttaaaaagataattctGAGCGTTCCGAGGACAACACTCTTCgaga aaaataattacataaaattttaaaaataaaaatggaaaaaaagaaacctt ttttataatttgatgctAACAACTGTTTTTCTGGTATTCTCATCTTAGGT AGGAGTGGGTTATACATGGGTGAATTTCACTTTTCTCGACTGGGCGCGCA CATCAAACTGATTTTTTTGACTTCCTTAATACATATTTACTAGATAGGAT TAAAAAGAACTTTTGTGATATTGCTCACATAAAAAGAATGGGAGCCCCTT GTTCAGATCCTGGTGAGACAGAAATGTGGTTcgttgaaaaagtttctaaa ttgACTGTAGACACAACGAACCATtgaatttggctaaaatttggtatacG CACTCTAAAGTtccgcaaaaaatatttttgaaatttaggaCAACCCTAGG CCCATTTCTCAATTTTGATAAAGTCAGGTGTCgcaaaatataaacaaagt CCAACTTGCTTCTCAAAATAAGGAATTATattcaataactttttttgtta cCAGGTAAATATTAAGTACAGTCCATTATCCAGTATTATGCAGTACTTTG ATAGCTAAGTTTAAAATCGACCATGGCGACTGCTAGCCTATAGATTCAAG ACTAAGAAAGACTTTCCAAACAGGAAAGTTGAATTTCTCGTAAAATTCAA AGAGCAACTATCTTACTTAATCTCTGAAGAGGGACTTTGCCGAATTACAG CATTGTATGACGATTTTTGCGTTTCCCAAGTCAACTCAACAACTCTCAAG TCAATCAAGGGCCAAAGGATACAGCCAAAAGAccctaaatattttttcaa gctATATTTTCACAGCAAACTTAAGAACCTACCCTgaagaacatctgtac caaactTTAGCCAAAACCGATGATTATTCACTGCTGTTGACCTCTAATCA TCTTTATTAGAACTATGAAAAATAGTTGCTGTATGGATCTATAAGGTGGG GTTTGAATAAGGCTTCCCACTTTCTTTATTCAAAAGATCATACAAAACAT TCTTTTCCAGTGTACACTGACAATTTAGAcctcaaaaaatttagtttgac atattttgaacGAACATTCATTTATAGCCCACTCCTAGTCTTAGTTGGGT TTCAAAGAAAATTGGTTAATTCAAATTTACTAATATAACCAAAAGCTGCT TGATACCAAAGATCACTGTTGTAGACTTTGACATTATAAAATTGACGAGC ACTTGTGTTGATTTGAGAAAAAACTTCAACGCCATCAaagatgattgaaa atttgtaatcaCCACCGCTAACATATCTTTGTTGAATTAACACATGATAT GTTTGGTTCATTAACAAATTTGGGATCTTGAAAGATTTATGCGGGTCATC GTTAACAGGACTGTAAATGCTCAGATCTGACgtatctttcaaaataaata cagCAGGTATGCGAGTGCCATGGGTAAAGCCGTTCTCATCTATTTCTGCC ATTCGAAAGATATTTCTATGTACACTCCCAGCAGCTTGTGTTAATCTAAT ATTGAATGCGACAGACCATTCTGGACTCAAAACAGGGACAATTGCAATAA GCTTGCCTTTGGTGATTTCAGTTTCTGAAATTACAATTTTGCTGACCTGA CAAATATGATATGTAAAGTTTGGCGGAAAATTAATCTGGTGGGTGACGGA AGGCAAAATAAATGGTGAGATCTTAACGAGGTTAGGATAGATCCAACCAC ATTAAAGAGTGAAAGAAATAGCCCCTTTTCATAGACATGGCAAGATTCTT TCAACACGATTGGGATAAaattaacggactgaaactcgatgtgGATTGAT ATTCATATGGTTTTAAGACTGAGATTTGAATTCAATTGTTTCAAGCCAGA AAGCTagggaagaaagtgaaaaatactCGGGACTATAATATTACTAATTC TTCCGGTGGCAGGGGctgttgaaatgaaaattttgttttctccttttctt AAGACATGCGCTTAAAGTCTTACCTTCGTCGACCAGCAAAATCGGTTTGA TTCCATGATTATTTCTCGGCACTCCTAAAATCTAAATAAAAGGAATACCA TATTAtttgattttatgaaaaatttaaagtctTATTCAATTATTGAAATA GTTTCACCATTGATAATCTCCTCAATCCGTTTTCCATAAGTGTACACTAC ACGttgtttttattagaacacctaaaatttggttGAGCCAACAATTTTCA ACCTAAAATGtccttaaatgcgttcttaatttttcagactactctaaata gACAAtatatgcaaaataaagagcacttgatattggtaaaatttcaaaaa tttggacagaatttgactctcgatttaagaaaatccatccctaagttcgg ttaaaactgcttgaaaagaggaaaaaattttagtttcttatcattttttt ccaaactgaggctaggcgtgttcttacgatgttcttaatttttcgtcgaa tttcagcctcaatgttcttataaactggggttctaataaaaaaaaaacgt gtatgaaagATGAAGTCCTATGAAATAGGGATTCGTGATGTTAGTGTAGG TTGTTCTCCTACATCACTGCAGCATTTATCTCTTTagattgaatagaaaa tagcatgtAACAGATGCACGATTCCAATGAAAAACGCAAATGTTTGGTGT TGATCTTTATTACTTTGAACGCTAAATATTTTATCTAATCTTTGGGAATT TTTCATAGATTCAGGGAATCTTCCTTTCAGAGCCAGCTTTATTTTTGCTA GTAAAGTAAAGTGGGAGTCATACGGTGTATCGGAATTGCAGAAAtcgatt cttttttcttcagattctcggaaatcgggcaaaatttcgtcggtattttg gaattctgaaattgttttggTATCAGAAATCCATGaaattttgcttcgaa atttcggtattataaagtttttatcctcctttttcggaattcatacatga aaaatcaaatcagtcaaaacgaggaaaaatacccagaAAATCGTTAGCGG AAtcgcaagtatttttttacggaatttcagaaattttggcaaaattattc ggtatttcagaaatcgcaaaccccgtccGCCCCCCTCAgtaatttatatt tcaaataaacATACCTTTTGACATGCAAACCCGTAACCTATATTCCAAGA GAATATTACAAATATACTTTGTAACGTATATAACATCATTGCTTTCTGAT AGAAAGACAACAACGGAAcataatattttatcaaaatattttagtttttt ccttatttcgatagaaattaaatcttttctttacaaattgttcaaaatta atatatttttaCTCAAACAATCCCTTTTCGGCTCTGATTCAATTTCAATG AATATTAAATAATaaccaaaattttattatttataagCTAATTCAATTCC TCTGCTCAGCCTTATGAATTGAATTTGTCCGTTTCTCCGCCAACAGCTTC TTTCAGCAACCGATTGAATGAGATGACAATACTCTCGAATTTGACTTACG TATAGAGGTAAAAAGGAGTTTTGATTTGGCTtgacgttttttcataagaa caaacttaaagttctatttatactgagacgattaatttgtctgagaggac caatttagaaaatgagcattatggatgattttccattcatgtttcaataa ataggataAGATCACATTTGACAAACTACTcgtctcagacgatttttccg tctcagtataaGGCGATACCAAATTAATTTGTTGCTCTACGGGCAgatta tcaggaaaatttaggtcatcgagaaaatcaaaatatattttttgtaattG AGGGTCGGcaaaacattttcttcagtTGTTCAAAAGTTTAACCCTTATTT TGATTAAAttcatattttcatttgaaGTGCTTGGGATTTGTAATTTTATT CTTGCGAAAGTCTGTGGTAGaaattttcagcttttcaaaTATGGTTAATC TTTCGAAAAACCAGTGTGCAAGATTAACTGCAGTggaattcaatattatt attttttcaatatcagCAAAAAttgggtcggtcgggcccgtagaacaaca aattaaatttgtctcGCCTAAATAGCCATTATATAAAAACACTTTGatga tcaaaatattatgaacaAGTTGACAAAGTTGGCTTTTTGGACTCTCAAAC TCTCTATTCCTCAGTAgtgaaatggacaaaaatagaaaaatcaaaatggt gaGAATgagaacatttcaaaaaaaattagggCTTAAAGCTCAAATAGTTA GTAAACGCAACAAAGGCCTTAAACATTTCGGATGTCCTTATGACAAAACG TGTACAcgcttttattttataagaatggtgttttttcatttcatcatgga tatttttaactttttggcgaaaatcatccaaaaatattcttacggtattc ttagtttaagatcgaaattggcaatctacaggttaaaatgcattaaaaat aaCACTCTTatgttcagttgctaaattccatgatggtgatattcttacca tatttgtcatattcttaattttttggccattttcatcatggacattctta taaagtatattcttataaaaaaaacgtgtactgtaaAATAGTCTTTATAT CTTTATACCTCGCCACTTTATCCATAGAGAAAACCCGTTTGCCCGATTCG CAAAAATAAAAACCTtgttatcaaaagttatagtaTAATATAAAATGCAG AATAATGTCATATTTTTATCATGTAATAATCTAATTTAATCTAATTGAAG GAAATTAATTGAGCCtgaattttatagatttttggaGCTTATGCAAAATT TTTCATGTGTACTTGTGGAAATTTCAGGCATATaactttaattaaaattt tccttagaaaCTTCCATCCACACTTCCATACAATTGTGTTTAGTTTGAAT TGCCTTTCGTATGGAAAGGTTTTACCAAGCCGATGAAACTTTGAATGACA AAAGGAGAGGGAAAAAACAGGTCAACAATAGATACCATAAATTCATTAAA GTTCTCTGTGAATTTAGGCAAAAACCTTAACAgggggggttttcactttt acggtatgacggtattgggcctttttacccccggtataaatcggtattac gagaaaaaaacgacgggattacggtatttcattttctcccggtatcggta aattcaCTGTTTTTTggcggtatttcgatatttttatcaataaaaaacgg tatttcggtataaaactatttaccttttagttttttcattagtttcatgc agaaaaactttcaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctaaataagcaaa actttacgatatttaaacaaatatttttgttatttttctgcgggcgcatt tttttaatgacaacttttgtgatgcaaatactgcatccaaatgagtctag ataaaattttctccgtcagcactaaatgatatgatcgtctctccgtattc acttatattgctactacaatacaatacactgatactgcagtaacttagaa acagtaaaggcggtatttactccttcaataattagtaaaaNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNggcaccacctctatgaagcctgtgttgaagtctacggctt cgcagaccatgattggcccaaacctcgattttaaattaattctcaatata aaagaaatattaaaaagtcgacgatatcgagaataaggtcacaaaactag caaaaaactttatattggCGAAAGtttttggtataagaataggtcaatct gtttaaaagaagccataaaaaggttaaatttagcccaataaggtcacaat cgtttaaccaaagatgtaaaagcaaaattggtgcgttGCGTGAAtccctg aattgagggttgactggggggcctcataaagtacaagacttgtttgtaca gtttctattttgttactacacaatagatttgataactgaaaattcattat tttcgaaaaaaaacataaatataatatcggtatcggtattaggcttcctt caccgacggtattacggtatttgacccaaaattttgtcggtatgacggta tttaagacccctgaaacccccccccccccttaacaGACGGAGCAGCAGAA TCGCTTTTTCCGGTCGGtggttgaaatttcaaaaattcggAAAATTGGAT cgtatattttttcaatacaaagCATCTTTAACAAATAATCAATGATcgca ttttgaaatttgaagacagtcaaaattcaattgaaaaactttttaaaatt gaaatacaAATCAAAGGAATTTTTGATGGAAGAATTTctgttttaatttt tgacaGGGACGGATTGAAACTTCGGAACAATTCAACAGAATGAAAGAAAC GTCCCTAATGATGAGGGAAAGGTGTTGTTTTCCAATGCAAAGAAAAATCA ACGGAGTATCTCACAAGATTGATTTTAGCAGCTTTGAGTCATGACTGGTA TTTGGACTGTTAAATCAATGTCGATGATTTCACGTACGTGATCAAAAATG ATATAAAACTATCAAGAAAAAGCAGTGTTCTGACTTAAAGTCAAGGTATG GTTTTTCAATTTGCtctaagattttcattttactcATCCATTGATTgaaa ttaaatcaaattcatattCCAGACTGTCTTGATACGAAATAAAATTTGTA TAGTAGAGTGTCACAATATTCCCGAAACAGATGAAAAATAGAGGGCAAGG ATTCAACATGTTACAAATACTACTCACCCTGTTTTTGTTGATATCCACTA TAACCTGTAAGTAAAATATTACTGTTAAATGGGGTTGcaatgaatttgaa aatctgCTTTGTGTAGAGAGACGTCACAACTACTCTTATTTTTTATCCAC CgggtcaaatatttttcatgctCCTTGGGGCACGAGGTTCAACCCCTTAA TCTAaatgttttttaggttttttggaaacattttgaaataGAAATTGAGA AAGGGAATTGTCAATTGTCACTTGCTGAAAAATcgagaaatttcgaaaaa aaaattagcaatTAGCTTGAATAACTTCTAGTAGGAAACTTTGTAATTCT GCTGACATTAGCAAACATTTCTTACCGTGAATCGCTTCATTTTTCCAAAT TATAGctttgatgaaaatttaaagtcaaaagctttctcctattaaagatt ttatttttatgacgtcatcaaaatggagaaaaatgaGGTTTTCTCGAAAT TTCTTCGATAGAAGCTAGAggtgaaaattctgaaaatatctttGACCTTT TGCGTTCTTAGGTGGAGAAGTGGAGGAAAACCTTTTGGACATTTATCAAA AGCAATTGATGAATGATGATTTCGATCCTGAAGGTTATGTTGAAGTtgaa gatgacgtcatcgtGGATCCCGaagatatcaatgataattttgaaatctt gaagGAACATCCAAATATTGATGAATTACACCAAGCTTTGCTGAAAATCT GTTCAAGTGTGTTGGATAGAGAACCAAATCTCCTCAAAGGTATgaaaaag cattcaaaaatctttgaagttggcaaaatacttttgaaaagtggcttcaa gaaattgaaaacaaataaacaatTAATGAAAGGTAAATCCTATCTTTCCA AAATATGCAAAAGTTTATTGAATGGTGGTTCAAGTAAAAAACACACGAAT CCAAACAATAACAAGTTAGGATCGAGTCATGAAGGGTTCAATATGGATAA ACACGTGTTGAGTGTTGGCAAAAAGATGTTCAGGATGTTTAGAAAGATAT GGAAAAGTGGTCAccgaaaaattttcgaaaatcggcaCAACGGGTTGAAA AGTGGTCACAAGATGTTCAAAAGTGgtcacaaaatgttgaaaatgggCAA AAACAAGTTGAATCACCTCACACCACAGCTGACGAAGGAATACACCAACT TACTGACAAAGTATCCAACACTTTTGAAGATGAATTCCCATATACTAAAC ATCAATAAAAACCCACTTGATTTACTTAAAATTTGTCTGGATTTTTAAAG TAACTTGATTGCGTTTTATATCCATCCTATACATCCATCCCCAAAGAAAT GACTAGAAGCACAGCGTTAGAATGACTTTATtagaaaaaaggttttgttg GTTTCTGAGGGGTATATTAGATTCGTCAAATTATGGGTGTGTGCCACCtg ctttttgaaaatctaaaagaaGATTGGTCAAATATCGAATTTTGGGATCC ATGCCCGtactttaaccaaaattttggcttttataatgaaaataattttt ttctagatctttttccttttttgtaacCCTGCGGAATATTGAAATTAGTT AGTCTGTTAGTTTGACGACCCTTGGCACGATTTCCAAGGTCCGGAAAAGA CCCGGTGGAGGGGTTCTTTGACAAAAAGGGGTGTGGGATGTGCCACTGGT CAAGCCAACTTTTTCACCTCCACCACGTAGAGTtgcaaaacaccaaaata aagAAATGAGTCCTTCGTAGGGTacgtttttttgagattttgtgaaaaaa gtagaaaattttgagaaattttgcgAGCTTtagtccatttttcgaacttc agcggcacacccccgtcggttggcaagggtagtaccccccatGGGCGAAA AAGACACATATCTTAAAGGCTAATTTTCTTATGTGACCTTCCCTCGAGTG TTGATTCCTTTGATAAAATAATATCAGAGACTTCAAAGCTGCTTTGGGAA ACTCGTACATCACTCTTAAAAGCAGTTTAAACTAGTGTTTCCTTGGCACC ATTCTCTGCTCCTTACAGAAAGAATTTGCTATGAGAATTTTGATGAATTG TAATTGATCGTTGAATTTTTTCTGTTTACATAACTAACTACCATTACAAC AACC

Coding sequence (CDS) from alignment at sc0000019:682265..696068+

>TCONS_00002268 ID=TCONS_00002268|Name=TCONS_00002268|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at sc0000019:682265..696068+ (Clytia hemisphaerica)
CCGAAACAGATGAAAAATAGAGGGCAAGGATTCAACATGTTACAAATACT
ACTCACCCTGTTTTTGTTGATATCCACTATAACCTGTGGAGAAGTGGAGG
AAAACCTTTTGGACATTTATCAAAAGCAATTGATGAATGATGATTTCGAT
CCTGAAGGTTATGTTGAAGTtgaagatgacgtcatcgtGGATCCCGaaga
tatcaatgataattttgaaatcttgaagGAACATCCAAATATTGATGAAT
TACACCAAGCTTTGCTGAAAATCTGTTCAAGTGTGTTGGATAGAGAACCA
AATCTCCTCAAAGGTATgaaaaagcattcaaaaatctttgaagttggcaa
aatacttttgaaaagtggcttcaagaaattgaaaacaaataaacaatTAA
TGAAAGGTAAATCCTATCTTTCCAAAATATGCAAAAGTTTATTGAATGGT
GGTTCAAGTAAAAAACACACGAATCCAAACAATAACAAGTTAGGATCGAG
TCATGAAGGGTTCAATATGGATAAACACGTGTTGAGTGTTGGCAAAAAGA
TGTTCAGGATGTTTAGAAAGATATGGAAAAGTGGTCAccgaaaaattttc
gaaaatcggcaCAACGGGTTGAAAAGTGGTCACAAGATGTTCAAAAGTGg
tcacaaaatgttgaaaatgggCAAAAACAAGTTGAATCACCTCACACCAC
AGCTGACGAAGGAATACACCAACTTACTGACAAAGTATCCAACACTTTTG
AAGATGAATTCCCATATACTAAACATCAATAAAAACCCACTTGATTTACT
TAAAATTTGTCTGGATTTTTAACCGAAACAGATGAAAAATAGAGGGCAAG
GATTCAACATGTTACAAATACTACTCACCCTGTTTTTGTTGATATCCACT
ATAACCTGTGGAGAAGTGGAGGAAAACCTTTTGGACATTTATCAAAAGCA
ATTGATGAATGATGATTTCGATCCTGAAGGTTATGTTGAAGTtgaagatg
acgtcatcgtGGATCCCGaagatatcaatgataattttgaaatcttgaag
GAACATCCAAATATTGATGAATTACACCAAGCTTTGCTGAAAATCTGTTC
AAGTGTGTTGGATAGAGAACCAAATCTCCTCAAAGGTATgaaaaagcatt
caaaaatctttgaagttggcaaaatacttttgaaaagtggcttcaagaaa
ttgaaaacaaataaacaatTAATGAAAGGTAAATCCTATCTTTCCAAAAT
ATGCAAAAGTTTATTGAATGGTGGTTCAAGTAAAAAACACACGAATCCAA
ACAATAACAAGTTAGGATCGAGTCATGAAGGGTTCAATATGGATAAACAC
GTGTTGAGTGTTGGCAAAAAGATGTTCAGGATGTTTAGAAAGATATGGAA
AAGTGGTCAccgaaaaattttcgaaaatcggcaCAACGGGTTGAAAAGTG
GTCACAAGATGTTCAAAAGTGgtcacaaaatgttgaaaatgggCAAAAAC
AAGTTGAATCACCTCACACCACAGCTGACGAAGGAATACACCAACTTACT
GACAAAGTATCCAACACTTTTGAAGATGAATTCCCATATACTAAACATCA
ATAAAAACCCACTTGATTTACTTAAAATTTGTCTGGATTTTTAACCGAAA
CAGATGAAAAATAGAGGGCAAGGATTCAACATGTTACAAATACTACTCAC
CCTGTTTTTGTTGATATCCACTATAACCTGTGGAGAAGTGGAGGAAAACC
TTTTGGACATTTATCAAAAGCAATTGATGAATGATGATTTCGATCCTGAA
GGTTATGTTGAAGTtgaagatgacgtcatcgtGGATCCCGaagatatcaa
tgataattttgaaatcttgaagGAACATCCAAATATTGATGAATTACACC
AAGCTTTGCTGAAAATCTGTTCAAGTGTGTTGGATAGAGAACCAAATCTC
CTCAAAGGTATgaaaaagcattcaaaaatctttgaagttggcaaaatact
tttgaaaagtggcttcaagaaattgaaaacaaataaacaatTAATGAAAG
GTAAATCCTATCTTTCCAAAATATGCAAAAGTTTATTGAATGGTGGTTCA
AGTAAAAAACACACGAATCCAAACAATAACAAGTTAGGATCGAGTCATGA
AGGGTTCAATATGGATAAACACGTGTTGAGTGTTGGCAAAAAGATGTTCA
GGATGTTTAGAAAGATATGGAAAAGTGGTCAccgaaaaattttcgaaaat
cggcaCAACGGGTTGAAAAGTGGTCACAAGATGTTCAAAAGTGgtcacaa
aatgttgaaaatgggCAAAAACAAGTTGAATCACCTCACACCACAGCTGA
CGAAGGAATACACCAACTTACTGACAAAGTATCCAACACTTTTGAAGATG
AATTCCCATATACTAAACATCAATAAAAACCCACTTGATTTACTTAAAAT
TTGTCTGGATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001200XLOC_001200Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002268-proteinTCONS_00002268-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002268-exon-sc0000019-1491911889:682265..682301TCONS_00002268-exon-sc0000019-1491911889:682265..682301Clytia hemisphaericaexon
TCONS_00002268-exon-sc0000019-1510915933:682265..682301TCONS_00002268-exon-sc0000019-1510915933:682265..682301Clytia hemisphaericaexon
TCONS_00002268-exon-sc0000019-1575043694:682265..682301TCONS_00002268-exon-sc0000019-1575043694:682265..682301Clytia hemisphaericaexon
TCONS_00002268-exon-sc0000019-1491911889:693922..693970TCONS_00002268-exon-sc0000019-1491911889:693922..693970Clytia hemisphaericaexon
TCONS_00002268-exon-sc0000019-1510915933:693922..693970TCONS_00002268-exon-sc0000019-1510915933:693922..693970Clytia hemisphaericaexon
TCONS_00002268-exon-sc0000019-1575043694:693922..693970TCONS_00002268-exon-sc0000019-1575043694:693922..693970Clytia hemisphaericaexon
TCONS_00002268-exon-sc0000019-1491911889:694476..696068TCONS_00002268-exon-sc0000019-1491911889:694476..696068Clytia hemisphaericaexon
TCONS_00002268-exon-sc0000019-1510915933:694476..696068TCONS_00002268-exon-sc0000019-1510915933:694476..696068Clytia hemisphaericaexon
TCONS_00002268-exon-sc0000019-1575043694:694476..696068TCONS_00002268-exon-sc0000019-1575043694:694476..696068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:682265..696068 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0241345 0 0 0 0.0650935 0.0257189 0.0930862 0 0.0203377 0 0 0.0803673 0 0.0666769 0.0137044 0 0 0.0185701 0.119158 0.0268467 0.0466692 0 2.1861 3.79755 2.04596 3.22229 779.513 648.52 3.67026 2.09154
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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