Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00002255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002255
Unique NameTCONS_00002255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002255 ID=TCONS_00002255|Name=TCONS_00002255|organism=Clytia hemisphaerica|type=transcript|length=2604bp
TGATAAATGCATGTTTTTATATTACAACACGGCATaaacataaggctttg
aggcCAAAAACTCGAGAACATTTCTGTAAACATTTCTTCTGTAAGGATTT
GTAGACTCTTAAAACGTGgcatttcaaaagaaaaaattttaaaccagGGT
TTTTACACAGACTTTTACATAACTAACGTAAAATCTCTTGTGCGAGTGAT
TGCCTGCATAAATTGTGATCATATATATACAATTTCtatgaatataaaaa
aataagattaaCTAAACACATAATTTGCTTAAAAGATCTTTACCGCAatc
aaaaacatcttcaaattcATTTGCCACTTTTTGTGGAGACCAAGATGAAG
AATTCAAATCTTTTGTCAATTTCACATTTTCGATGTAGATATCTGAATTA
TCTTTGGTCAAGTCACTGCTGTTGATATTGCGCAAAACAGATTCCTCCGA
TATCTTTTAACTAATATCGGTGCCAGAAATCATTATTGTTTCGTAATTGA
CTTTCGacaataagtaatagttatcacacggtacagagtacaatatgggg
atatatttttcgagttcagatttttcgtcatattataaaaaatagaaaac
tctgaacgagaaaaatatatcccatattgttTGAACGAGTAAGTGTGATA
ACTGGGTTATCCTGgtttatcgtcaacttgaaaaatatcaacaaactttt
ctcTCTCTCGGTGttgtcttttttaatgttttgtttttttctcttctaac
tttttgtttttttctctctccTTGAAATCaacacaaaaacattcgaaaaa
aatcgaatggccattaaaaagatcaaaacattctATTCATAATTCTTTTG
AAACCTGATGTGCATTatgaatgaaaagaaaacattcctGAGCATAAAAG
TGTACAGCAAAATgatctctcgcttaccagaccccttttCTTGCATTTTG
TACAGTACAAAATGAAATACAGTatttatgtacgcgtttttagccaatca
gactgctcatatttttcatgttgacaaTAAACTAAAATATATCCTTCGGG
TACTTGAGGAATTTCTTCCTagtcaataaaaagaaaaaagggttTTCACT
TTTCACGTTAAATCCTATGTGTGAATGCTTGCATCAAAATGTGAATTATA
TAAACCaaatgtaaattaaaaatacatGCATTAAACTCATAATTGTCTCA
GAAGATCTTTACcgaaatcaaaaacattttcaaattcatttgCCACTTTT
TGTGGAGACCAAGATGAAGAATTTAAATCTTTTGTCAATTTCACATTTTC
GATGTAGATATCTGAAATATCTTTGGTCAAGTCACTGCTGTTGATATTGC
GCAAAACAGATTCCTCCGATATCTTCAATCTAATATCGGTGCCAGAGATC
ATGTACTTTTTTGTAATCGACTTTCGACAATAAGATAAAATATATCCTTC
GGGTAATTGAGGAATTTCTTCCAAGTCTAAAGTACCAGGTTTGATTCGTA
GATTGTGGAAAAAATTATTCTTCAATGCATTAGAATGCTCTTTGATGCTT
TGCTCGAACAATGGGTCTGACTCATACATTTTAACTTTCAACCTCAAATC
GAGACTTGTTTTCGGGTCGACAATATCGAGGCGTGCAACCGATTTTTCTG
GCCAGCAAAAATAGCCAGGACCCACATCAATATCATCAACAAATTGCGAG
CTGCCTTCTTTTGGGATGAATTGACCATTTAAATTGACGAAAATCTTGTA
TCGGAAAGTTGAAAGTGGGTTATAGGTGTGGAAAGTGAAATCATATCGAC
AAAACTCATCTTCTTTAATCCAACGGTGGTAATTATCAAATTGATCTAGA
GCTGGGACTTTTTCGCGTTCAAGTCTTCGATAGGCTAAAACCTCAGATCC
ATCTTTGATAATATCGATAACTTGGCAAGATCCTTCTGGAAGTTTAAACA
AAGCTTTTCCTAAATGGAACTTCAAAGAAAGTTCACCGTATGCTGAACTC
ATATTCTGCAGTAATACAAGAGCtttttcaaaatcagttttCAAGTCAGG
AATCTCATAAAATGATGTTATCGCTTCAAAACCATCGCAACCGGTAATGG
TACACATATTTCGAATGCCTGGAAAAGAACTTTTTTCAAGCCACAAATAC
TGATCAGCCTTTAGACCGATTACGTAACATTTTCGATAATCTTTGCTTTC
TGCGTCAGCCATGAGACGTGTTAGATTATCTGCGAGAAATGCTGAAAAGT
CATCTGCATGTTTCTTTGTACCTTTGACAAAGATTGATCTGGTCTTCGAA
TCTAGTCTGATAAGTACTTGatatttgatttcaaaatattcaagtTTATC
GTTGATTGCATGCCAGGCGTTTTTATGGGCTGGTATGCGATCTGAATACG
TCATGAGGCATGTTTCAACCATGTTCGAGACATCAGGACGCTTTCTCTTG
ATCAAGTCGTTCGCTATCTTTTGAGCTTTTTCAAATTGGGTTACAATAAC
TTTAATTGATTCTTCTTTCTTGGTATAATCAATATAGATTGGTTTGAACT
CTTGTTTGTTTTGGTAGATATAACGACTAAGGCAGCTTGGTACATCTAAA
GCCT
Run BLAST on NCBI

transcript from alignment at sc0000019:555565..558168+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002255 ID=TCONS_00002255|Name=TCONS_00002255|organism=Clytia hemisphaerica|type=transcript|length=2604bp|location=Sequence derived from alignment at sc0000019:555565..558168+ (Clytia hemisphaerica)
TGATAAATGCATGTTTTTATATTACAACACGGCATaaacataaggctttg aggcCAAAAACTCGAGAACATTTCTGTAAACATTTCTTCTGTAAGGATTT GTAGACTCTTAAAACGTGgcatttcaaaagaaaaaattttaaaccagGGT TTTTACACAGACTTTTACATAACTAACGTAAAATCTCTTGTGCGAGTGAT TGCCTGCATAAATTGTGATCATATATATACAATTTCtatgaatataaaaa aataagattaaCTAAACACATAATTTGCTTAAAAGATCTTTACCGCAatc aaaaacatcttcaaattcATTTGCCACTTTTTGTGGAGACCAAGATGAAG AATTCAAATCTTTTGTCAATTTCACATTTTCGATGTAGATATCTGAATTA TCTTTGGTCAAGTCACTGCTGTTGATATTGCGCAAAACAGATTCCTCCGA TATCTTTTAACTAATATCGGTGCCAGAAATCATTATTGTTTCGTAATTGA CTTTCGacaataagtaatagttatcacacggtacagagtacaatatgggg atatatttttcgagttcagatttttcgtcatattataaaaaatagaaaac tctgaacgagaaaaatatatcccatattgttTGAACGAGTAAGTGTGATA ACTGGGTTATCCTGgtttatcgtcaacttgaaaaatatcaacaaactttt ctcTCTCTCGGTGttgtcttttttaatgttttgtttttttctcttctaac tttttgtttttttctctctccTTGAAATCaacacaaaaacattcgaaaaa aatcgaatggccattaaaaagatcaaaacattctATTCATAATTCTTTTG AAACCTGATGTGCATTatgaatgaaaagaaaacattcctGAGCATAAAAG TGTACAGCAAAATgatctctcgcttaccagaccccttttCTTGCATTTTG TACAGTACAAAATGAAATACAGTatttatgtacgcgtttttagccaatca gactgctcatatttttcatgttgacaaTAAACTAAAATATATCCTTCGGG TACTTGAGGAATTTCTTCCTagtcaataaaaagaaaaaagggttTTCACT TTTCACGTTAAATCCTATGTGTGAATGCTTGCATCAAAATGTGAATTATA TAAACCaaatgtaaattaaaaatacatGCATTAAACTCATAATTGTCTCA GAAGATCTTTACcgaaatcaaaaacattttcaaattcatttgCCACTTTT TGTGGAGACCAAGATGAAGAATTTAAATCTTTTGTCAATTTCACATTTTC GATGTAGATATCTGAAATATCTTTGGTCAAGTCACTGCTGTTGATATTGC GCAAAACAGATTCCTCCGATATCTTCAATCTAATATCGGTGCCAGAGATC ATGTACTTTTTTGTAATCGACTTTCGACAATAAGATAAAATATATCCTTC GGGTAATTGAGGAATTTCTTCCAAGTCTAAAGTACCAGGTTTGATTCGTA GATTGTGGAAAAAATTATTCTTCAATGCATTAGAATGCTCTTTGATGCTT TGCTCGAACAATGGGTCTGACTCATACATTTTAACTTTCAACCTCAAATC GAGACTTGTTTTCGGGTCGACAATATCGAGGCGTGCAACCGATTTTTCTG GCCAGCAAAAATAGCCAGGACCCACATCAATATCATCAACAAATTGCGAG CTGCCTTCTTTTGGGATGAATTGACCATTTAAATTGACGAAAATCTTGTA TCGGAAAGTTGAAAGTGGGTTATAGGTGTGGAAAGTGAAATCATATCGAC AAAACTCATCTTCTTTAATCCAACGGTGGTAATTATCAAATTGATCTAGA GCTGGGACTTTTTCGCGTTCAAGTCTTCGATAGGCTAAAACCTCAGATCC ATCTTTGATAATATCGATAACTTGGCAAGATCCTTCTGGAAGTTTAAACA AAGCTTTTCCTAAATGGAACTTCAAAGAAAGTTCACCGTATGCTGAACTC ATATTCTGCAGTAATACAAGAGCtttttcaaaatcagttttCAAGTCAGG AATCTCATAAAATGATGTTATCGCTTCAAAACCATCGCAACCGGTAATGG TACACATATTTCGAATGCCTGGAAAAGAACTTTTTTCAAGCCACAAATAC TGATCAGCCTTTAGACCGATTACGTAACATTTTCGATAATCTTTGCTTTC TGCGTCAGCCATGAGACGTGTTAGATTATCTGCGAGAAATGCTGAAAAGT CATCTGCATGTTTCTTTGTACCTTTGACAAAGATTGATCTGGTCTTCGAA TCTAGTCTGATAAGTACTTGatatttgatttcaaaatattcaagtTTATC GTTGATTGCATGCCAGGCGTTTTTATGGGCTGGTATGCGATCTGAATACG TCATGAGGCATGTTTCAACCATGTTCGAGACATCAGGACGCTTTCTCTTG ATCAAGTCGTTCGCTATCTTTTGAGCTTTTTCAAATTGGGTTACAATAAC TTTAATTGATTCTTCTTTCTTGGTATAATCAATATAGATTGGTTTGAACT CTTGTTTGTTTTGGTAGATATAACGACTAAGGCAGCTTGGTACATCTAAA GCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001193XLOC_001193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002255-exon-sc0000019-1491911889:555565..558168TCONS_00002255-exon-sc0000019-1491911889:555565..558168Clytia hemisphaericaexon
TCONS_00002255-exon-sc0000019-1510915933:555565..558168TCONS_00002255-exon-sc0000019-1510915933:555565..558168Clytia hemisphaericaexon
TCONS_00002255-exon-sc0000019-1575043694:555565..558168TCONS_00002255-exon-sc0000019-1575043694:555565..558168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:555565..558168 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.629332 0.761965 0.831148 0.769904 2.19327 0.907943 1.35829 2.26564 0.666002 0.892581 0.453717 0.523161 0.594104 0.282464 0.812784 0.602262 0.614017 0.681794 0.667953 0.758205 0.764405 0.537327 1.37106 1.2434 0.440803 0.5242 0.912583 0.698217 1.06162 0.511476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top