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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002244 ID=TCONS_00002244|Name=TCONS_00002244|organism=Clytia hemisphaerica|type=transcript|length=711bp
GGAAAACACAACTGTACAAACTTATTTGATCAACCTTTCAAAACTCACTT
GTGTCAAAGAGATGTGCAAAGCAACAAAGTTACAAAACATCTCAAGCTTT
GGACATCACAAGTCATCTGCCATCTATAAAAATAATAAGGTCATGGCAAA
GTTAacaattttttcagttatcaTTTTATGCTTCACAATTTCATTGACTT
ACGGTACGGTATGTCGTGATACGAACAAATGGTGTCCACAAATGACAACA
CATGGTGCTTGCGGCTTTTATAAACCAACACAAGAACAATGTCCAAGAAG
GTGTGGTAGATGCAATGCGACATGTGACATCGCACGTGATACACGACGAG
AATGTGGACATAAAGGAATAACATTAACAAAATGCGAAAGTCGTGGATGT
TGTTTCAGAGTACCAGTTGATATCAACAGGAAAAATACTCCATGGTGTTT
CTATCCCGAAGAACAATGCAAATTCATTGAAGGTCACAAGCGAAAAGATT
GTGGTCACCTTGGTATCTCTAAAGATGAATGCATGGACAAAGGATGTTGC
TGGTCACCTCTGGTTGGAGCTTCTAAAAAACACCCATGGTGTCATCATTC
TGAATAAAacgaaaagaaatatttatctTTGAATGTAacaatttgtttta
tttgaagcaatatattgttaaaaatattgaaaaatttaaatttttttgtt
taaaggcCGTC Run BLAST on NCBI protein sequence of TCONS_00002244-protein >TCONS_00002244-protein ID=TCONS_00002244-protein|Name=TCONS_00002244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
ENTTVQTYLINLSKLTCVKEMCKATKLQNISSFGHHKSSAIYKNNKVMAK
LTIFSVIILCFTISLTYGTVCRDTNKWCPQMTTHGACGFYKPTQEQCPRR
CGRCNATCDIARDTRRECGHKGITLTKCESRGCCFRVPVDINRKNTPWCF
YPEEQCKFIEGHKRKDCGHLGISKDECMDKGCCWSPLVGASKKHPWCHHS
E Run BLAST on NCBI transcript from alignment at sc0000019:381149..384390+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002244 ID=TCONS_00002244|Name=TCONS_00002244|organism=Clytia hemisphaerica|type=transcript|length=3242bp|location=Sequence derived from alignment at sc0000019:381149..384390+ (Clytia hemisphaerica)
GGAAAACACAACTGTACAAACTTATTTGATCAACCTTTCAAAACTCACTT
GTGTCAAAGAGATGTGCAAAGCAACAAAGTTACAAAACATCTCAAGCTTT
GGACATCACAAGTCATCTGCCATCTATAAAAATAATAAGGTCATGGCAAA
GTTAacaattttttcagttatcaTTTTATGCTTCACAATTTCATTGACTT
ACGGTAAGTTTTTTGAACCCTGATTCATTCCCGGGAGTActagacacccc
tgtctcacagccccactggaacctttttcctcagtgggggaTAAACATTC
CTATTGAATTCctgatggggatagaaattctattgttccaaggttaaaaa
tgcCAGTAGGGAtagttttggagtacaatttttaaacattgaatttcgaa
tagggatgaaatcaaagtcattttcccagtggggctaaaatttcaaaata
ttttcccaccggggacgaaattttgaccaaattttccagtggggctgagg
tcccagtgggtctgtgacacaggggtgttactAGGTACTTTTAGAGTGGT
ACATAACCGTATTTTTCCATTTGCCTGGGAAACTCACGGGGATTGACAAT
TTTAGGGCATCttattaaattaaaaattacaattaactctcgctaattcg
aactcgaacgagaaatcaatttcttttgaataaCAGAGTGATTCGAATTg
tagaaaatattttacaagGGTTTCCCCTTGATGAGGACTTAATCAATTTC
AATTATagaagattcgaataatagaagtttgaACAAGTGAGAGTCCTCTG
TAATATAAGTTAAAATTCACCACTCCTACCTCAACCATAATGTTCCTCAT
CCCAAGAATCCCAAACACCATTAGTTTACCAAAGACTTTCCAGCAACCTA
GGGTGTTTCAGTTAATCCTCCTTCACCACCCTATCCGATAACTTTTCAAA
ACTTGCTTGATGAATTTGAGGTTTAATGAATTCGATAAAGGTTTTAATGT
CAATGAAAATtggattgaagaaaaaattatatcaGGAACAAAATTCATTG
CAAAATACCCACTAGCTTAAAGCTTTAAAATAGAGCTCTAGATTACTCCG
CACTCCGCACTCCGCACTAAACGACACTACGTGATTATTACCATATCCTT
TTAATAATGGAGCAGATTCACTAACCAACTCTCTCGAATATGATCCTTCC
ATGTAGTACCGTTGTTAGTGGGGGCTTCCGAGGGTAAGAAATATCGTAAT
ACCGATATTTTCTTCTTGAAATATCGGTCAATACCAGCCTCTTGGTAGCC
CCCTAGCTACCTACCGGGAGAGGGCAAATGGGCTACACCCTGATTTTCTG
AGAAACAGTTTTTCATGAAAtacaaattttttgataaattaattCATTAC
CCATTTCATCTTATATTAGGTACGGTATGTCGTGATACGAACAAATGGTG
TCCACAAATGACAACACATGGTGCTTGCGGCTTTTATAAACCAACACAAG
AACAATGTCCAAGAAGGTGTGGTAGATGCAATGGTGAGTGagcatcccag
ctggcacacaacgttgtttcaacgtttatttaacgttagatgaacgttgg
aacagcgttttgtgccagctgggatggtAATAAAAaggaatctccataac
tcgaacacgcacggggaacacaaaggTTAAGGAAGTTCCGAGTTGGAGAG
TACGGTTTCTAAGGTATTGGTAAATAAAAGGACCCTAAAAGTATGTGGGT
GTCTTTTTGATCGTGGAATGGCCTATAACTATAGCTTTCTTTTCGACTGA
AAACGTCACaaaagtgacgtaatgtcaATTGATATTTCCGCTTGGTGTAT
GTCCTGAATATTTAGGCTCGAAACCACGGATATCATCTGCACACTAGATA
GGTTTAAATGTTTACATATTTCCCATGAAACTACGTCCAGCTTTAAGGTC
GACTAGTATGCCATGATGGTTTCGGTTTATACTAGATTTGCGAACGTTCA
AGTTCCAAAACATTGGATAATCCCACTGATGACAACAAGAATAGAGTACA
AAATGGCAGGCTTGTCAGCTCCTTAAACCTTATTTAATTCTGATATTCAT
GACATAATCTTTTATACGAATACACACGAAAAACACCGGGGGTTGGCCCC
Cagctttattgtttaaattcaaaactggtggcaaacgcccggtgtttttc
gggtgttttcgtataaaagattacgtcatggaTATCAAGAATATGGGAAT
CTCGATCCAGTAAAGTAATAAGAGATCAGTGTTTAAATACTAGACTTTGT
ACCGTTTCAGCGACATGTGACATCGCACGTGATACACGACGAGAATGTGG
ACATAAAGGAATAACATTAACAAAATGCGAAAGTCGTGGATGTTGTTTCA
GAGTACCAGTTGATATCAACAGGAAAAATACTCCATGGTGTTTCTATCCC
GAAGGTTAGTGTTTTATGAAATATACCACACCCAAGATCACTAAcgaagg
gaatagtttaggaggcgCGATGAATTTAAAAATGGTGGTTAGCCTGGGGC
GGAGTAAGCAGTCCTGGCGGAGGTATTTACAGTGTTTGTTCCAAACTcaa
ccgccacttttttcccggtAAACTACCCTCAATCACGCCCTGCCCTGTGC
ATACATATTTTCCCACGTTTACAGAGcctctaacggacgatagcatcatC
TACACCCGCAttccctctctaattcgattttcaaggggagtTGGATTTGC
ATCGGATAAGGAAGTGAATCGAATAGTAGTGCGTCGTTTGTAAGAGTTTC
ttattgacggtgactttcTATATCATCAAATATTGAAGCGTAACGTTAGA
GAGTGCTATGAGAGTTCATGTAATCTCTTACCATCTAGGGCTTTTAGTAC
TTCTTGAGCCCCAAAGAATacattttcttttcaagatcGAAAACATTTTT
AACGTGTTTTATCTTTCTATTATCAACTTTTCCATTCCACAGAACAATGC
AAATTCATTGAAGGTCACAAGCGAAAAGATTGTGGTCACCTTGGTATCTC
TAAAGATGAATGCATGGACAAAGGATGTTGCTGGTCACCTCTGGTTGGAG
CTTCTAAAAAACACCCATGGTGTCATCATTCTGAATAAAacgaaaagaaa
tatttatctTTGAATGTAacaatttgttttatttgaagcaatatattgtt
aaaaatattgaaaaatttaaatttttttgtttaaaggcCGTC Coding sequence (CDS) from alignment at sc0000019:381149..384390+ >TCONS_00002244 ID=TCONS_00002244|Name=TCONS_00002244|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at sc0000019:381149..384390+ (Clytia hemisphaerica)
GAAAACACAACTGTACAAACTTATTTGATCAACCTTTCAAAACTCACTTG
TGTCAAAGAGATGTGCAAAGCAACAAAGTTACAAAACATCTCAAGCTTTG
GACATCACAAGTCATCTGCCATCTATAAAAATAATAAGGTCATGGCAAAG
TTAacaattttttcagttatcaTTTTATGCTTCACAATTTCATTGACTTA
CGGTACGGTATGTCGTGATACGAACAAATGGTGTCCACAAATGACAACAC
ATGGTGCTTGCGGCTTTTATAAACCAACACAAGAACAATGTCCAAGAAGG
TGTGGTAGATGCAATGCGACATGTGACATCGCACGTGATACACGACGAGA
ATGTGGACATAAAGGAATAACATTAACAAAATGCGAAAGTCGTGGATGTT
GTTTCAGAGTACCAGTTGATATCAACAGGAAAAATACTCCATGGTGTTTC
TATCCCGAAGAACAATGCAAATTCATTGAAGGTCACAAGCGAAAAGATTG
TGGTCACCTTGGTATCTCTAAAGATGAATGCATGGACAAAGGATGTTGCT
GGTCACCTCTGGTTGGAGCTTCTAAAAAACACCCATGGTGTCATCATTCT
GAATAAGAAAACACAACTGTACAAACTTATTTGATCAACCTTTCAAAACT
CACTTGTGTCAAAGAGATGTGCAAAGCAACAAAGTTACAAAACATCTCAA
GCTTTGGACATCACAAGTCATCTGCCATCTATAAAAATAATAAGGTCATG
GCAAAGTTAacaattttttcagttatcaTTTTATGCTTCACAATTTCATT
GACTTACGGTACGGTATGTCGTGATACGAACAAATGGTGTCCACAAATGA
CAACACATGGTGCTTGCGGCTTTTATAAACCAACACAAGAACAATGTCCA
AGAAGGTGTGGTAGATGCAATGCGACATGTGACATCGCACGTGATACACG
ACGAGAATGTGGACATAAAGGAATAACATTAACAAAATGCGAAAGTCGTG
GATGTTGTTTCAGAGTACCAGTTGATATCAACAGGAAAAATACTCCATGG
TGTTTCTATCCCGAAGAACAATGCAAATTCATTGAAGGTCACAAGCGAAA
AGATTGTGGTCACCTTGGTATCTCTAAAGATGAATGCATGGACAAAGGAT
GTTGCTGGTCACCTCTGGTTGGAGCTTCTAAAAAACACCCATGGTGTCAT
CATTCTGAATAAGAAAACACAACTGTACAAACTTATTTGATCAACCTTTC
AAAACTCACTTGTGTCAAAGAGATGTGCAAAGCAACAAAGTTACAAAACA
TCTCAAGCTTTGGACATCACAAGTCATCTGCCATCTATAAAAATAATAAG
GTCATGGCAAAGTTAacaattttttcagttatcaTTTTATGCTTCACAAT
TTCATTGACTTACGGTACGGTATGTCGTGATACGAACAAATGGTGTCCAC
AAATGACAACACATGGTGCTTGCGGCTTTTATAAACCAACACAAGAACAA
TGTCCAAGAAGGTGTGGTAGATGCAATGCGACATGTGACATCGCACGTGA
TACACGACGAGAATGTGGACATAAAGGAATAACATTAACAAAATGCGAAA
GTCGTGGATGTTGTTTCAGAGTACCAGTTGATATCAACAGGAAAAATACT
CCATGGTGTTTCTATCCCGAAGAACAATGCAAATTCATTGAAGGTCACAA
GCGAAAAGATTGTGGTCACCTTGGTATCTCTAAAGATGAATGCATGGACA
AAGGATGTTGCTGGTCACCTCTGGTTGGAGCTTCTAAAAAACACCCATGG
TGTCATCATTCTGAATAAGAAAACACAACTGTACAAACTTATTTGATCAA
CCTTTCAAAACTCACTTGTGTCAAAGAGATGTGCAAAGCAACAAAGTTAC
AAAACATCTCAAGCTTTGGACATCACAAGTCATCTGCCATCTATAAAAAT
AATAAGGTCATGGCAAAGTTAacaattttttcagttatcaTTTTATGCTT
CACAATTTCATTGACTTACGGTACGGTATGTCGTGATACGAACAAATGGT
GTCCACAAATGACAACACATGGTGCTTGCGGCTTTTATAAACCAACACAA
GAACAATGTCCAAGAAGGTGTGGTAGATGCAATGCGACATGTGACATCGC
ACGTGATACACGACGAGAATGTGGACATAAAGGAATAACATTAACAAAAT
GCGAAAGTCGTGGATGTTGTTTCAGAGTACCAGTTGATATCAACAGGAAA
AATACTCCATGGTGTTTCTATCCCGAAGAACAATGCAAATTCATTGAAGG
TCACAAGCGAAAAGATTGTGGTCACCTTGGTATCTCTAAAGATGAATGCA
TGGACAAAGGATGTTGCTGGTCACCTCTGGTTGGAGCTTCTAAAAAACAC
CCATGGTGTCATCATTCTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002244-exon-sc0000019-1491911889:381149..381351 | TCONS_00002244-exon-sc0000019-1491911889:381149..381351 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1510915933:381149..381351 | TCONS_00002244-exon-sc0000019-1510915933:381149..381351 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1575043694:381149..381351 | TCONS_00002244-exon-sc0000019-1575043694:381149..381351 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1491911889:382568..382681 | TCONS_00002244-exon-sc0000019-1491911889:382568..382681 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1510915933:382568..382681 | TCONS_00002244-exon-sc0000019-1510915933:382568..382681 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1575043694:382568..382681 | TCONS_00002244-exon-sc0000019-1575043694:382568..382681 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1491911889:383459..383602 | TCONS_00002244-exon-sc0000019-1491911889:383459..383602 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1510915933:383459..383602 | TCONS_00002244-exon-sc0000019-1510915933:383459..383602 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1575043694:383459..383602 | TCONS_00002244-exon-sc0000019-1575043694:383459..383602 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1491911889:384141..384390 | TCONS_00002244-exon-sc0000019-1491911889:384141..384390 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1510915933:384141..384390 | TCONS_00002244-exon-sc0000019-1510915933:384141..384390 | Clytia hemisphaerica | exon |
| TCONS_00002244-exon-sc0000019-1575043694:384141..384390 | TCONS_00002244-exon-sc0000019-1575043694:384141..384390 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:381149..384390 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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