TCONS_00002238 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002238
Unique Name	TCONS_00002238
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1149

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000019:273848..277096+
coding sequence from alignment at sc0000019:273848..277096+

transcript sequence

>TCONS_00002238 ID=TCONS_00002238|Name=TCONS_00002238|organism=Clytia hemisphaerica|type=transcript|length=1149bp
ctttttcaggATGATTTCCGTACAAAACATTTTGTTGGTTGCTTGCGTCG
CCCTGGCTTCTGCAACCCAATACAATTTGGAATTCGAAGAAAATGGTTCG
AAATACAACGAACGAATCATTGTTGacaaaaagaaaggatttttaCTTTA
TGATGTACCAAAACATGGTGATATCGAGGCTGCCAAATTCTTGAAAGACT
TCAACACTCGATTCAACGTTCTCCGTGACGCTGCATTGAAAATTTGTTAC
ATTTGGAAAATGAAGGGAGACGAACCAACCCCAGATAGCATCGAAGATGG
TCTCAAAATGGTTCAAGGCCACTTCCCAAACAACAAATTCTTGGTTGAAa
atgacgaaatttttgctGGTCCAGAACTTAAAGAAGACTCTTTATCTGCT
CTCATCAAGCAATTCTGTCAAGGAATGCAAAAATTGAGCATCGTCCGAAA
ATCAAGCAAAGATATGGAACAAATCTTGAAACAACAAATTATCAGAAAAT
ACAGCGGCCGATCCAAGCGTGATACTGTCCATCACGTTGTCGAATACAAG
CCATGTAACGCTGCAACTATGGTTCCAGAACTCGAAAAATGTAACTCATG
CAACCGAATGGATCTCATCAAATTGAACTGCGATATCACATACACCAAAT
ACTGCGGATACACCGTTCGCCGTGGAATGTGGACTGCCGACTGCACTAAA
TCAACCAGCGGACGTCACGGAggtttcgaatgccgtcttccATCGCATAC
TCGCGCCACGGTCAAATGTTGCCGTCTTAAATGTCCATTGGCTAACAAAT
GCAACAACCCACCACCAAACAAGAaaacattttagattttctatctaaat
tttaaataattGAATAGATCAATGTTTGCAAAATATATACTACAGACTAT
GTCGTATGCTTATTTCGTTTCAtctttgtttgtattttatatGTATCGTA
TTTATCAGCCATATCTGAACCCCAAATGACAGGACATGAAAAAAAGTTGG
CCAAATTCTTGTAAATTCTTCagggctctggacatacccaatttttcaat
tttacaatAACTTAAATGgtaatttctgcattttaaaaagattaatgtat
aactttttttatatgtcctgttaaacctacctttttagaatttaaaaat

Run BLAST on NCBI

protein sequence of TCONS_00002238-protein

>TCONS_00002238-protein ID=TCONS_00002238-protein|Name=TCONS_00002238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
FFRMISVQNILLVACVALASATQYNLEFEENGSKYNERIIVDKKKGFLLY
DVPKHGDIEAAKFLKDFNTRFNVLRDAALKICYIWKMKGDEPTPDSIEDG
LKMVQGHFPNNKFLVENDEIFAGPELKEDSLSALIKQFCQGMQKLSIVRK
SSKDMEQILKQQIIRKYSGRSKRDTVHHVVEYKPCNAATMVPELEKCNSC
NRMDLIKLNCDITYTKYCGYTVRRGMWTADCTKSTSGRHGGFECRLPSHT
RATVKCCRLKCPLANKCNNPPPNKKTF

Run BLAST on NCBI

transcript from alignment at sc0000019:273848..277096+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002238 ID=TCONS_00002238|Name=TCONS_00002238|organism=Clytia hemisphaerica|type=transcript|length=3249bp|location=Sequence derived from alignment at sc0000019:273848..277096+ (Clytia hemisphaerica)
ctttttcaggATGATTTCCGTACAAAACATTTTGTTGGTTGCTTGCGTCG
CCCTGGCTTCTGTAAGTCGTTATTAACTTCTTTTTTcatagtattttttg
aaatttaattttagcATCACTTCAGGGCTTCAGAGTTACAACCGACTTTC
TTCAAAATATTCAGAGTTTCTTCCATCATACAACTAAATACAAAAGATTA
CTTATTTAATACCAACAACTCTCTCTAGTTCGAACTTCTGTTTCTCAAAT
CTCTCTActataattcgaattaaaaCGTCGAGCTTTTCGAAGAAGATTTT
CTCTTTCTCGAAAGTCGAATAAGAGAGAGATGACTGTTCTCCATTACAAA
ATTTCTCAATATTTATAAAACTACAAATTCTTACTTTATTCAGGCAACCC
AATACAATTTGGAATTCGAAGAAAATGGTTCGAAATACAACGAACGAATC
ATTGTTGacaaaaagaaaggatttttaCTTTATGATGTACCAAAACATGG
TGATATCGAGGCTGCCAAATTCTTGAAAGACTTCAACACTGTAAGTAGAT
TGTTAGATAACTTTTATTCCCTTCTTATTttcacccctgtgtcacaaatc
CGGCAAGGCCTCCTCCCTACTTGAAAaaggctacatacactacacaagaT
ATTGTCATTCAACCcgatttacttatttatttactCGTTTTATTTATTCC
AACAGAAACAATAAAttctatattttatatataGAAAACGACAGTCCGCA
AACCAtgttgtcgaatattgttcgccAATATATTGCGTAGCCTAAATATT
AAACCTTTGCCCAATGGGCTACTCCAAGAGGATGGTAACGCCCCTAACTC
AACATCACGGCTGTTGTTCCGATAAGTAACCCTATACACGTTTTCTGAAT
AAAAATTTTCCTCGTGAGAAAAATGACCCAAAATTTTATAGCCATTGGAA
AACAATAAGAAAAGACTTTTGAATATCTGAACTGGATTTCTGAACTTAAA
Ggtcttgtttttaaataagagtggtatcgtttgcttactcatcaatttta
atacaCAAGCtgtttcacattggattgacacggatgtggagcaagattgg
tcagaaataggaaaagaaaaacttttttttgcttatatcagcataattta
acaatagcaagacactttCCTGGtggtatgaaatatgtgtctgatatgaa
acggtaACACTTATGTCAAACTAAACCTTTAAGCAATAAAAAGTCATTTT
ATCTCTCCAATGGCTAGAATATTGTCATAGGGACAGGGGTGTATATCTTG
TCACATtgtgatttatttatttttcccttTTCAGCGATTCAACGTTCTCC
GTGACGCTGCATTGAAAATTTGTTACATTTGGAAAATGAAGGGAGACGAA
CCAACCCCAGATAGCATCGAAGATGGTCTCAAAATGGTAAGGTTTCCGGC
GACTTTATTTCAAATACTATGGATTTACGAATTGATTGCAAATACGATGC
TAATAATCTGCCTCTGAAACTACATGATATGAAACCACTAATTCAAACTT
TCTAAGAACTTTACAAGTCTTCGGCAACACCTAGATGTGGCCAAAAAGAG
ATATATATGAAcaaattaaagtttttaaatttgtataCATCATTTGAATT
ATGTTAGGTTGCACATCCAACACACCGGGGATGCGCACACCCAAGTGTTA
CTTATGTAAAAGATTTTTACTGTTCTCTAACAttttattgggcttttcca
gaaaagattGTAAAGGGGGGTTGGGGATATGGGACATCCACGGGATGCAT
TTACATGGATCAAAAGGGCTGAATATCAAGGGGGATTTAGTCTTCAAATT
TGACACAAATCTATAAGGATTGTCCATGAAATTGATATCGTCAACACACC
TCCACACAATTCTTTACTCTCTTTGCTTTAATCCACTCTAGGTTCAAGGC
CACTTCCCAAACAACAAATTCTTGGTTGAAaatgacgaaatttttgctGG
TCCAGAACTTAAAGAAGACTCTTTATCTGCTCTCATCAAGCAATTCTGTC
AAGGAATGCAAAAATTGAGCATCGTCCGAAAATCAAGCAAAGATATGGAA
CAAATCTTGAAACAACAAATTATCAGTAAGAatccttttgttttaaatat
ttcccttttttaaGTCTTCTGGTACATTACTTTTAAGAACCCTTTTGGCG
ACTTCAATGggatttaaatttcatttttttcaagtcagaaaattcagtgg
ggatgggaagaATAATAATTTGCAGTGAGGACtggtttatttgattgttt
tcagtggggataaaaaattttcactttggcctggggacgatattttagcc
AACTTTTACAGTTTGGGGTCCCAGTTGGTCTATGAGAAGATGGTATATTt
aagcattttcaaatttttccgaTCCTGCCCTTATTTTAAGAGCAGAAGTC
CCCTAATTATGTAATTTTTGATTTGCTTTCATTTGCTTAAGACTCAGCAA
CTCCATTCTCAaagtttttcataaattaaTATATAGGGTGAAACTGAAAA
TTGACAGTGCAAAAACTgattctcttttttcatgtcTTACCCAGGAAAAT
ACAGCGGCCGATCCAAGCGTGATACTGTCCATCACGTTGTCGAATACAAG
CCATGTAACGCTGCAACTATGGTTCCAGAACTCGAAAAATGTAACTCATG
CAACCGAATGGATCTCATCAAATTGAACTGCGATATCACATACACCAAAT
ACTGCGGATACACCGTTCGCCGTGGAATGTGGACTGCCGACTGCACTAAA
TCAACCAGCGGACGTCACGGAggtttcgaatgccgtcttccATCGCATAC
TCGCGCCACGGTCAAATGTTGCCGTCTTAAATGTCCATTGGCTAACAAAT
GCAACAACCCACCACCAAACAAGAaaacattttagattttctatctaaat
tttaaataattGAATAGATCAATGTTTGCAAAATATATACTACAGACTAT
GTCGTATGCTTATTTCGTTTCAtctttgtttgtattttatatGTATCGTA
TTTATCAGCCATATCTGAACCCCAAATGACAGGACATGAAAAAAAGTTGG
CCAAATTCTTGTAAATTCTTCagggctctggacatacccaatttttcaat
tttacaatAACTTAAATGgtaatttctgcattttaaaaagattaatgtat
aactttttttatatgtcctgttaaacctacctttttagaatttaaaaat

Coding sequence (CDS) from alignment at sc0000019:273848..277096+

>TCONS_00002238 ID=TCONS_00002238|Name=TCONS_00002238|organism=Clytia hemisphaerica|type=CDS|length=4170bp|location=Sequence derived from alignment at sc0000019:273848..277096+ (Clytia hemisphaerica)
tttttcaggATGATTTCCGTACAAAACATTTTGTTGGTTGCTTGCGTCGC
CCTGGCTTCTGCAACCCAATACAATTTGGAATTCGAAGAAAATGGTTCGA
AATACAACGAACGAATCATTGTTGacaaaaagaaaggatttttaCTTTAT
GATGTACCAAAACATGGTGATATCGAGGCTGCCAAATTCTTGAAAGACTT
CAACACTCGATTCAACGTTCTCCGTGACGCTGCATTGAAAATTTGTTACA
TTTGGAAAATGAAGGGAGACGAACCAACCCCAGATAGCATCGAAGATGGT
CTCAAAATGGTTCAAGGCCACTTCCCAAACAACAAATTCTTGGTTGAAaa
tgacgaaatttttgctGGTCCAGAACTTAAAGAAGACTCTTTATCTGCTC
TCATCAAGCAATTCTGTCAAGGAATGCAAAAATTGAGCATCGTCCGAAAA
TCAAGCAAAGATATGGAACAAATCTTGAAACAACAAATTATCAGAAAATA
CAGCGGCCGATCCAAGCGTGATACTGTCCATCACGTTGTCGAATACAAGC
CATGTAACGCTGCAACTATGGTTCCAGAACTCGAAAAATGTAACTCATGC
AACCGAATGGATCTCATCAAATTGAACTGCGATATCACATACACCAAATA
CTGCGGATACACCGTTCGCCGTGGAATGTGGACTGCCGACTGCACTAAAT
CAACCAGCGGACGTCACGGAggtttcgaatgccgtcttccATCGCATACT
CGCGCCACGGTCAAATGTTGCCGTCTTAAATGTCCATTGGCTAACAAATG
CAACAACCCACCACCAAACAAGAaaacattttagtttttcaggATGATTT
CCGTACAAAACATTTTGTTGGTTGCTTGCGTCGCCCTGGCTTCTGCAACC
CAATACAATTTGGAATTCGAAGAAAATGGTTCGAAATACAACGAACGAAT
CATTGTTGacaaaaagaaaggatttttaCTTTATGATGTACCAAAACATG
GTGATATCGAGGCTGCCAAATTCTTGAAAGACTTCAACACTCGATTCAAC
GTTCTCCGTGACGCTGCATTGAAAATTTGTTACATTTGGAAAATGAAGGG
AGACGAACCAACCCCAGATAGCATCGAAGATGGTCTCAAAATGGTTCAAG
GCCACTTCCCAAACAACAAATTCTTGGTTGAAaatgacgaaatttttgct
GGTCCAGAACTTAAAGAAGACTCTTTATCTGCTCTCATCAAGCAATTCTG
TCAAGGAATGCAAAAATTGAGCATCGTCCGAAAATCAAGCAAAGATATGG
AACAAATCTTGAAACAACAAATTATCAGAAAATACAGCGGCCGATCCAAG
CGTGATACTGTCCATCACGTTGTCGAATACAAGCCATGTAACGCTGCAAC
TATGGTTCCAGAACTCGAAAAATGTAACTCATGCAACCGAATGGATCTCA
TCAAATTGAACTGCGATATCACATACACCAAATACTGCGGATACACCGTT
CGCCGTGGAATGTGGACTGCCGACTGCACTAAATCAACCAGCGGACGTCA
CGGAggtttcgaatgccgtcttccATCGCATACTCGCGCCACGGTCAAAT
GTTGCCGTCTTAAATGTCCATTGGCTAACAAATGCAACAACCCACCACCA
AACAAGAaaacattttagtttttcaggATGATTTCCGTACAAAACATTTT
GTTGGTTGCTTGCGTCGCCCTGGCTTCTGCAACCCAATACAATTTGGAAT
TCGAAGAAAATGGTTCGAAATACAACGAACGAATCATTGTTGacaaaaag
aaaggatttttaCTTTATGATGTACCAAAACATGGTGATATCGAGGCTGC
CAAATTCTTGAAAGACTTCAACACTCGATTCAACGTTCTCCGTGACGCTG
CATTGAAAATTTGTTACATTTGGAAAATGAAGGGAGACGAACCAACCCCA
GATAGCATCGAAGATGGTCTCAAAATGGTTCAAGGCCACTTCCCAAACAA
CAAATTCTTGGTTGAAaatgacgaaatttttgctGGTCCAGAACTTAAAG
AAGACTCTTTATCTGCTCTCATCAAGCAATTCTGTCAAGGAATGCAAAAA
TTGAGCATCGTCCGAAAATCAAGCAAAGATATGGAACAAATCTTGAAACA
ACAAATTATCAGAAAATACAGCGGCCGATCCAAGCGTGATACTGTCCATC
ACGTTGTCGAATACAAGCCATGTAACGCTGCAACTATGGTTCCAGAACTC
GAAAAATGTAACTCATGCAACCGAATGGATCTCATCAAATTGAACTGCGA
TATCACATACACCAAATACTGCGGATACACCGTTCGCCGTGGAATGTGGA
CTGCCGACTGCACTAAATCAACCAGCGGACGTCACGGAggtttcgaatgc
cgtcttccATCGCATACTCGCGCCACGGTCAAATGTTGCCGTCTTAAATG
TCCATTGGCTAACAAATGCAACAACCCACCACCAAACAAGAaaacatttt
agtttttcaggATGATTTCCGTACAAAACATTTTGTTGGTTGCTTGCGTC
GCCCTGGCTTCTGCAACCCAATACAATTTGGAATTCGAAGAAAATGGTTC
GAAATACAACGAACGAATCATTGTTGacaaaaagaaaggatttttaCTTT
ATGATGTACCAAAACATGGTGATATCGAGGCTGCCAAATTCTTGAAAGAC
TTCAACACTCGATTCAACGTTCTCCGTGACGCTGCATTGAAAATTTGTTA
CATTTGGAAAATGAAGGGAGACGAACCAACCCCAGATAGCATCGAAGATG
GTCTCAAAATGGTTCAAGGCCACTTCCCAAACAACAAATTCTTGGTTGAA
aatgacgaaatttttgctGGTCCAGAACTTAAAGAAGACTCTTTATCTGC
TCTCATCAAGCAATTCTGTCAAGGAATGCAAAAATTGAGCATCGTCCGAA
AATCAAGCAAAGATATGGAACAAATCTTGAAACAACAAATTATCAGAAAA
TACAGCGGCCGATCCAAGCGTGATACTGTCCATCACGTTGTCGAATACAA
GCCATGTAACGCTGCAACTATGGTTCCAGAACTCGAAAAATGTAACTCAT
GCAACCGAATGGATCTCATCAAATTGAACTGCGATATCACATACACCAAA
TACTGCGGATACACCGTTCGCCGTGGAATGTGGACTGCCGACTGCACTAA
ATCAACCAGCGGACGTCACGGAggtttcgaatgccgtcttccATCGCATA
CTCGCGCCACGGTCAAATGTTGCCGTCTTAAATGTCCATTGGCTAACAAA
TGCAACAACCCACCACCAAACAAGAaaacattttagtttttcaggATGAT
TTCCGTACAAAACATTTTGTTGGTTGCTTGCGTCGCCCTGGCTTCTGCAA
CCCAATACAATTTGGAATTCGAAGAAAATGGTTCGAAATACAACGAACGA
ATCATTGTTGacaaaaagaaaggatttttaCTTTATGATGTACCAAAACA
TGGTGATATCGAGGCTGCCAAATTCTTGAAAGACTTCAACACTCGATTCA
ACGTTCTCCGTGACGCTGCATTGAAAATTTGTTACATTTGGAAAATGAAG
GGAGACGAACCAACCCCAGATAGCATCGAAGATGGTCTCAAAATGGTTCA
AGGCCACTTCCCAAACAACAAATTCTTGGTTGAAaatgacgaaatttttg
ctGGTCCAGAACTTAAAGAAGACTCTTTATCTGCTCTCATCAAGCAATTC
TGTCAAGGAATGCAAAAATTGAGCATCGTCCGAAAATCAAGCAAAGATAT
GGAACAAATCTTGAAACAACAAATTATCAGAAAATACAGCGGCCGATCCA
AGCGTGATACTGTCCATCACGTTGTCGAATACAAGCCATGTAACGCTGCA
ACTATGGTTCCAGAACTCGAAAAATGTAACTCATGCAACCGAATGGATCT
CATCAAATTGAACTGCGATATCACATACACCAAATACTGCGGATACACCG
TTCGCCGTGGAATGTGGACTGCCGACTGCACTAAATCAACCAGCGGACGT
CACGGAggtttcgaatgccgtcttccATCGCATACTCGCGCCACGGTCAA
ATGTTGCCGTCTTAAATGTCCATTGGCTAACAAATGCAACAACCCACCAC
CAAACAAGAaaacattttag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001184	XLOC_001184	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002238-protein	TCONS_00002238-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000019	supercontig	sc0000019:273848..277096 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.422009	0	0.270921	0	0.0526364	0	0	0	0.0993794	0	0	0.0974047	54.2973	35.6018	475.281	1065.96	85.5905	89.7263	1552.58	1320.17	8.68206	9.81592	258.261	212.176	61.2991	75.8766	24.5612	24.5923	814.289	1102.67

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007084	BRICHOS_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00002238 vs. Swiss-Prot (Human)

BLAST of TCONS_00002238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00002238 (transcript) - C. hemisphaerica