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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002235 ID=TCONS_00002235|Name=TCONS_00002235|organism=Clytia hemisphaerica|type=transcript|length=790bp
AGGCAACCCAATATAATTTGGAATTCGAAGAAAATGGTTCGAAATACAAC
GAACGAATTATTGTTGacaaaaagaaaggatttttaCTTTATGATGTACC
AAAACATGGTGATATCGAGGCTGCCAAATTCTTGAAAGACTTCAACACTC
GATTCAACGTTCTCCGTGACGCTGCATTGAAAATTTGTTACATTTGGAAA
ATGAAGGGAGACGAACCAACTCCAGACAGCATCGAAGATGGTCTCAAAAT
GGTTCAAGGACACTTCCCAAACAACAAATTCTTGGTTGAAaatgacgaaa
tttttgctGGTCCAGAACTTAAAGAAGACTCTTTATCCGCTCTCATGAAG
CAATTCTGTCAAGGAATGCAAAAGTTGAGCATCGTTCGAAAATCAAGCAA
AGATATGGAACAAATCTTAAAGCAACAAATCATCAaaaagtACGGTTCCG
GTAGTCGAACAAAACGTGCTACAGTACACACTGTCAGCGAGTACAAAGCG
TGTAATCCAGCCGCCATGAAACCAGAACTGGAAAAATGCAATTCTTGCAA
TCGAATCGATCTCATCAAATTAAATTGTGATATCAACTACACAAAATACT
GCGGATATGAGGTTCGAGGTCGTGGAATCGACTGTCAAAAATCAAGATAC
GGAAATCATGGAGGTTTTCAGTGCAGTCTTCCGTCACACACTCGCGCCAC
GGTCAGATGTTGCCGACTTAGATGTCCGTTGCCCAACAAATGTAATAGTC
CACCACCAAACAagaaaggaaaataattttatgATGTCTC Run BLAST on NCBI transcript from alignment at sc0000019:266742..269117+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002235 ID=TCONS_00002235|Name=TCONS_00002235|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0000019:266742..269117+ (Clytia hemisphaerica)
AGGCAACCCAATATAATTTGGAATTCGAAGAAAATGGTTCGAAATACAAC
GAACGAATTATTGTTGacaaaaagaaaggatttttaCTTTATGATGTACC
AAAACATGGTGATATCGAGGCTGCCAAATTCTTGAAAGACTTCAACACTG
TAAGTagattgtttttagtttttttttatattcatgatatgcaccattgc
aacgACTTcaacggacccaacagctgattggttgaaagtgacgtattgat
tgactttacgtcacttacaaccaatcagctattgggtccgtgatgtaatg
tcagaagacattgcaatggtgcatatcatgaattggcaTAGAACGTGTCC
ACACGTCACTCGGGTTTGAAGGGTTaaggtttttcttttgttgcatTTTT
TATGGTNCTGAGACCCTTTAACAGCTTATTCCAATAATCTTGCAACAACT
GCAACTCCAACGTAAACTAAAATCTGTTTTGGATTTATGGAAAATACGAG
TTATAAAGTATTCGGTAATCGATTATTATCGATGATTAATCGGTATTTAT
CGACAGTTTAGCTATCgattatttttggaattttgattTGTTAACAATTA
CTATAGAATTTTTCGATGGCTAATCAatgacaatagaccttttcataaat
tacgttatgaacatcacttgccccgtttcaaaattattgccatgatgatt
aactcccagcggattttattaaaactactttctattcataaaaatcattt
tatgtctcaagggatatgatcatcatagtaattgtttgaatacgaggcaa
gtgatgttcctgacgtaatttatgaaaaggtctggTATTGGTGCTCTTAA
TTTTTTACCTCGATTTATTATTTATCCACCTGTTAATATCGATTATGTTA
TCGATTATTATCGATGATCAATTTTATCAAGCCATATTTCCCCTACTTTC
CCTTTCTAGCGATTCAACGTTCTCCGTGACGCTGCATTGAAAATTTGTTA
CATTTGGAAAATGAAGGGAGACGAACCAACTCCAGACAGCATCGAAGATG
GTCTCAAAATGGTAAGGTTTTCGGTGACTTTATTTCAAATACTATGGATT
TACAAATTATTGNTCTCAAAATGGTAAGGTCTTGCGTGGAAAGTTTTGTG
AAACATTTTTGCTTCGGGTACCTTAGTATTCGTTCTCTCCAATAGAAAAT
ATGACAATAATGCATTGAATTCTTACACTAAAAATTAATTACATAGAAAA
TACTGTGAAGGGTAGTCTGAGGTCTGCTTAATAGTGAATGACCTACTTTC
TCGCTAAGTTTGCCAATTATTACATTTTGAGAGTTGCAAAGTTTTGGTTT
AGCTCAAAGATAAGGAACGGTTTTgttagaggatgagcagaagcctcgGG
GCTGTAACACGTAGCACTCCCCTACACGTAGTAAATATAAAGAAGCTTCT
TACGGTTGCGGCAATCTTATGTGAACAAAATTCTATTATTATTCTCCATC
CAGGTTCAAGGACACTTCCCAAACAACAAATTCTTGGTTGAAaatgacga
aatttttgctGGTCCAGAACTTAAAGAAGACTCTTTATCCGCTCTCATGA
AGCAATTCTGTCAAGGAATGCAAAAGTTGAGCATCGTTCGAAAATCAAGC
AAAGATATGGAACAAATCTTAAAGCAACAAATCATCAGTAAGGAATCTTT
GCTCCTTCAAAGTTTTTCGATGTTTTGAATGAATTATATCGCCAAATAAC
ATGCTCTTAGTCAAGGTGTCTTATAAGCGggaagattgaaaaaaaattaa
ttaacggAGTGTAGGATTGAAGTTATACTGCTAGATATCCCGAAATGCCA
AAAAGTAAATAAAGACTCAAATcgggctatttagagcaaatccTTTAATT
AGCTTTGAGGGTTGGTAAACCAGTTTGGCTAaaaaaaaaagtcgaaaatc
aaaaaacGACAGGCCTTTTTGGACTCTTTCCAAAATCGCTTGTATCTATC
AGgtcgatttttctttattagaaaagtACGGTTCCGGTAGTCGAACAAAA
CGTGCTACAGTACACACTGTCAGCGAGTACAAAGCGTGTAATCCAGCCGC
CATGAAACCAGAACTGGAAAAATGCAATTCTTGCAATCGAATCGATCTCA
TCAAATTAAATTGTGATATCAACTACACAAAATACTGCGGATATGAGGTT
CGAGGTCGTGGAATCGACTGTCAAAAATCAAGATACGGAAATCATGGAGG
TTTTCAGTGCAGTCTTCCGTCACACACTCGCGCCACGGTCAGATGTTGCC
GACTTAGATGTCCGTTGCCCAACAAATGTAATAGTCCACCACCAAACAag
aaaggaaaataattttatgATGTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002235-exon-sc0000019-1491911889:266742..266890 | TCONS_00002235-exon-sc0000019-1491911889:266742..266890 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1510915933:266742..266890 | TCONS_00002235-exon-sc0000019-1510915933:266742..266890 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1575043694:266742..266890 | TCONS_00002235-exon-sc0000019-1575043694:266742..266890 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1491911889:267701..267802 | TCONS_00002235-exon-sc0000019-1491911889:267701..267802 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1510915933:267701..267802 | TCONS_00002235-exon-sc0000019-1510915933:267701..267802 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1575043694:267701..267802 | TCONS_00002235-exon-sc0000019-1575043694:267701..267802 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1491911889:268245..268428 | TCONS_00002235-exon-sc0000019-1491911889:268245..268428 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1510915933:268245..268428 | TCONS_00002235-exon-sc0000019-1510915933:268245..268428 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1575043694:268245..268428 | TCONS_00002235-exon-sc0000019-1575043694:268245..268428 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1491911889:268763..269117 | TCONS_00002235-exon-sc0000019-1491911889:268763..269117 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1510915933:268763..269117 | TCONS_00002235-exon-sc0000019-1510915933:268763..269117 | Clytia hemisphaerica | exon |
| TCONS_00002235-exon-sc0000019-1575043694:268763..269117 | TCONS_00002235-exon-sc0000019-1575043694:268763..269117 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:266742..269117 + |
Blast
The following BLAST results are available for this feature:
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