TCONS_00002235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002235
Unique NameTCONS_00002235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002235 ID=TCONS_00002235|Name=TCONS_00002235|organism=Clytia hemisphaerica|type=transcript|length=790bp
AGGCAACCCAATATAATTTGGAATTCGAAGAAAATGGTTCGAAATACAAC
GAACGAATTATTGTTGacaaaaagaaaggatttttaCTTTATGATGTACC
AAAACATGGTGATATCGAGGCTGCCAAATTCTTGAAAGACTTCAACACTC
GATTCAACGTTCTCCGTGACGCTGCATTGAAAATTTGTTACATTTGGAAA
ATGAAGGGAGACGAACCAACTCCAGACAGCATCGAAGATGGTCTCAAAAT
GGTTCAAGGACACTTCCCAAACAACAAATTCTTGGTTGAAaatgacgaaa
tttttgctGGTCCAGAACTTAAAGAAGACTCTTTATCCGCTCTCATGAAG
CAATTCTGTCAAGGAATGCAAAAGTTGAGCATCGTTCGAAAATCAAGCAA
AGATATGGAACAAATCTTAAAGCAACAAATCATCAaaaagtACGGTTCCG
GTAGTCGAACAAAACGTGCTACAGTACACACTGTCAGCGAGTACAAAGCG
TGTAATCCAGCCGCCATGAAACCAGAACTGGAAAAATGCAATTCTTGCAA
TCGAATCGATCTCATCAAATTAAATTGTGATATCAACTACACAAAATACT
GCGGATATGAGGTTCGAGGTCGTGGAATCGACTGTCAAAAATCAAGATAC
GGAAATCATGGAGGTTTTCAGTGCAGTCTTCCGTCACACACTCGCGCCAC
GGTCAGATGTTGCCGACTTAGATGTCCGTTGCCCAACAAATGTAATAGTC
CACCACCAAACAagaaaggaaaataattttatgATGTCTC
Run BLAST on NCBI

transcript from alignment at sc0000019:266742..269117+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002235 ID=TCONS_00002235|Name=TCONS_00002235|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0000019:266742..269117+ (Clytia hemisphaerica)
AGGCAACCCAATATAATTTGGAATTCGAAGAAAATGGTTCGAAATACAAC GAACGAATTATTGTTGacaaaaagaaaggatttttaCTTTATGATGTACC AAAACATGGTGATATCGAGGCTGCCAAATTCTTGAAAGACTTCAACACTG TAAGTagattgtttttagtttttttttatattcatgatatgcaccattgc aacgACTTcaacggacccaacagctgattggttgaaagtgacgtattgat tgactttacgtcacttacaaccaatcagctattgggtccgtgatgtaatg tcagaagacattgcaatggtgcatatcatgaattggcaTAGAACGTGTCC ACACGTCACTCGGGTTTGAAGGGTTaaggtttttcttttgttgcatTTTT TATGGTNCTGAGACCCTTTAACAGCTTATTCCAATAATCTTGCAACAACT GCAACTCCAACGTAAACTAAAATCTGTTTTGGATTTATGGAAAATACGAG TTATAAAGTATTCGGTAATCGATTATTATCGATGATTAATCGGTATTTAT CGACAGTTTAGCTATCgattatttttggaattttgattTGTTAACAATTA CTATAGAATTTTTCGATGGCTAATCAatgacaatagaccttttcataaat tacgttatgaacatcacttgccccgtttcaaaattattgccatgatgatt aactcccagcggattttattaaaactactttctattcataaaaatcattt tatgtctcaagggatatgatcatcatagtaattgtttgaatacgaggcaa gtgatgttcctgacgtaatttatgaaaaggtctggTATTGGTGCTCTTAA TTTTTTACCTCGATTTATTATTTATCCACCTGTTAATATCGATTATGTTA TCGATTATTATCGATGATCAATTTTATCAAGCCATATTTCCCCTACTTTC CCTTTCTAGCGATTCAACGTTCTCCGTGACGCTGCATTGAAAATTTGTTA CATTTGGAAAATGAAGGGAGACGAACCAACTCCAGACAGCATCGAAGATG GTCTCAAAATGGTAAGGTTTTCGGTGACTTTATTTCAAATACTATGGATT TACAAATTATTGNTCTCAAAATGGTAAGGTCTTGCGTGGAAAGTTTTGTG AAACATTTTTGCTTCGGGTACCTTAGTATTCGTTCTCTCCAATAGAAAAT ATGACAATAATGCATTGAATTCTTACACTAAAAATTAATTACATAGAAAA TACTGTGAAGGGTAGTCTGAGGTCTGCTTAATAGTGAATGACCTACTTTC TCGCTAAGTTTGCCAATTATTACATTTTGAGAGTTGCAAAGTTTTGGTTT AGCTCAAAGATAAGGAACGGTTTTgttagaggatgagcagaagcctcgGG GCTGTAACACGTAGCACTCCCCTACACGTAGTAAATATAAAGAAGCTTCT TACGGTTGCGGCAATCTTATGTGAACAAAATTCTATTATTATTCTCCATC CAGGTTCAAGGACACTTCCCAAACAACAAATTCTTGGTTGAAaatgacga aatttttgctGGTCCAGAACTTAAAGAAGACTCTTTATCCGCTCTCATGA AGCAATTCTGTCAAGGAATGCAAAAGTTGAGCATCGTTCGAAAATCAAGC AAAGATATGGAACAAATCTTAAAGCAACAAATCATCAGTAAGGAATCTTT GCTCCTTCAAAGTTTTTCGATGTTTTGAATGAATTATATCGCCAAATAAC ATGCTCTTAGTCAAGGTGTCTTATAAGCGggaagattgaaaaaaaattaa ttaacggAGTGTAGGATTGAAGTTATACTGCTAGATATCCCGAAATGCCA AAAAGTAAATAAAGACTCAAATcgggctatttagagcaaatccTTTAATT AGCTTTGAGGGTTGGTAAACCAGTTTGGCTAaaaaaaaaagtcgaaaatc aaaaaacGACAGGCCTTTTTGGACTCTTTCCAAAATCGCTTGTATCTATC AGgtcgatttttctttattagaaaagtACGGTTCCGGTAGTCGAACAAAA CGTGCTACAGTACACACTGTCAGCGAGTACAAAGCGTGTAATCCAGCCGC CATGAAACCAGAACTGGAAAAATGCAATTCTTGCAATCGAATCGATCTCA TCAAATTAAATTGTGATATCAACTACACAAAATACTGCGGATATGAGGTT CGAGGTCGTGGAATCGACTGTCAAAAATCAAGATACGGAAATCATGGAGG TTTTCAGTGCAGTCTTCCGTCACACACTCGCGCCACGGTCAGATGTTGCC GACTTAGATGTCCGTTGCCCAACAAATGTAATAGTCCACCACCAAACAag aaaggaaaataattttatgATGTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001184XLOC_001184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002235-exon-sc0000019-1491911889:266742..266890TCONS_00002235-exon-sc0000019-1491911889:266742..266890Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1510915933:266742..266890TCONS_00002235-exon-sc0000019-1510915933:266742..266890Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1575043694:266742..266890TCONS_00002235-exon-sc0000019-1575043694:266742..266890Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1491911889:267701..267802TCONS_00002235-exon-sc0000019-1491911889:267701..267802Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1510915933:267701..267802TCONS_00002235-exon-sc0000019-1510915933:267701..267802Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1575043694:267701..267802TCONS_00002235-exon-sc0000019-1575043694:267701..267802Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1491911889:268245..268428TCONS_00002235-exon-sc0000019-1491911889:268245..268428Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1510915933:268245..268428TCONS_00002235-exon-sc0000019-1510915933:268245..268428Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1575043694:268245..268428TCONS_00002235-exon-sc0000019-1575043694:268245..268428Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1491911889:268763..269117TCONS_00002235-exon-sc0000019-1491911889:268763..269117Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1510915933:268763..269117TCONS_00002235-exon-sc0000019-1510915933:268763..269117Clytia hemisphaericaexon
TCONS_00002235-exon-sc0000019-1575043694:268763..269117TCONS_00002235-exon-sc0000019-1575043694:268763..269117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:266742..269117 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.427863 0.312883 0.0691389 0.222077 0.658778 0.189864 0.434132 0.404874 0.10411 1.11327 0.407322 0.351728 4.84527 7.7023 612.968 1104.58 55.0986 68.0579 13.4051 6.1662 4.32482 2.65409 431.94 385.267 54.2923 50.2539 13.387 22.2118 1717.04 2240.92
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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