TCONS_00002234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002234
Unique NameTCONS_00002234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002234 ID=TCONS_00002234|Name=TCONS_00002234|organism=Clytia hemisphaerica|type=transcript|length=275bp
attttgaagaaaataaaactGAAGAGTGTATTTCCACAGGTGTCAAGTAT
CATTAACCCATCTTTAGTTCCCAGACCTTTCCAAGGTACACTGGGTACTA
ACTTGGTAAAAATTGAAGTGTATTTAAGACTGGTCTCTCTTGGACGAcca
attatatttttcaattttggagatcttcatttttcaacgaaGAAGGAAGT
CAGTTCTACAAATTTAAAATACAATGATTTCCCTTCAAAGCATTTTGTTG
GTGGCTTGTGTCGCTTTGGCGTCGG
Run BLAST on NCBI

transcript from alignment at sc0000019:265779..266300+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002234 ID=TCONS_00002234|Name=TCONS_00002234|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0000019:265779..266300+ (Clytia hemisphaerica)
attttgaagaaaataaaactGAAGAGTGTATTTCCACAGGTGTCAAGTAT
CATTAACCCATCTTTAGTTCCCAGACCTTTCCAAGGTACACTGGGTACTA
ACTTGGTAAAAATTGAAGTGTATTTAAGACTGGTCTCTCTTGGACGAcca
attatatttttcaattttggagatcttcatttttcaacgaaGAAGGAAGT
CAGTTCTACAAATTTAAAATACGTGAGTTATTTCTTTAATCTCTGCACAC
CATGCGTATCCGAGAAAGATTGCTCTATTTCGTTCTAGGGTTACTTTGGA
ACACCATATGTTACATCTATTCTCAATGCTCTCTTGAAAAATTGATTTCC
ATTTTTGCTCAATAAAATTCCACTTTGGTCAAATTCCTGTCTtggatgaa
aattcaaaatatcaaccCTCCTTTTTACTGTACCCTACTTCATTGTAAAG
CTACAACCTTCTTTTTCAGAATGATTTCCCTTCAAAGCATTTTGTTGGTG
GCTTGTGTCGCTTTGGCGTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001183XLOC_001183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002234-exon-sc0000019-1491911889:265779..266000TCONS_00002234-exon-sc0000019-1491911889:265779..266000Clytia hemisphaericaexon
TCONS_00002234-exon-sc0000019-1510915933:265779..266000TCONS_00002234-exon-sc0000019-1510915933:265779..266000Clytia hemisphaericaexon
TCONS_00002234-exon-sc0000019-1575043694:265779..266000TCONS_00002234-exon-sc0000019-1575043694:265779..266000Clytia hemisphaericaexon
TCONS_00002234-exon-sc0000019-1491911889:266248..266300TCONS_00002234-exon-sc0000019-1491911889:266248..266300Clytia hemisphaericaexon
TCONS_00002234-exon-sc0000019-1510915933:266248..266300TCONS_00002234-exon-sc0000019-1510915933:266248..266300Clytia hemisphaericaexon
TCONS_00002234-exon-sc0000019-1575043694:266248..266300TCONS_00002234-exon-sc0000019-1575043694:266248..266300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:265779..266300 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.563272	0.679564	0	0	0.551722	0	0.704053	0	0	3.90183	10.6292	0.793595	0.406705	0	0.587972	0	0	4.24236	8.81582	1.70252	8.61024	0	0.773503	25.227	29.2887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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