TCONS_00002224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002224
Unique NameTCONS_00002224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002224 ID=TCONS_00002224|Name=TCONS_00002224|organism=Clytia hemisphaerica|type=transcript|length=991bp
ttttcccaaatctctgattaatctaatgttcacaacgtcgaTATGaagtt
agatgaacgttaaaacaacatcgtgtgccagctggattTGTATTCCCAAA
ATTGCGTTTTTCATGTCATTTGTAATTCATCtagggaaaatttttgtaca
caGAAATCAGTTCAACACTGAGAGATGTGAGTGAGTGTCTTGTGTGTGAG
AGGTGCGTTTTACTAAAGTTTAATTTACTGTATGCGTTGTCTTATTTCGG
TTCTTTATGGTTTTGTAGCATTTTAAGTTTGTTTAAGTTCAAGAATTGGT
GTTTgccttttacattttttgttgtctgttttctgttttgtttccTTAAG
TTAGGTTCCTTTTTACTTACTTAAAGCTGAGATATTTCGACCAGTCATAT
TATTCAAAACAAATTCGTCTTCTACTCACAACTGGTAAAGCTTAtcaagg
aaaaaaatttcggtcaattttttatatttactaaACTTAAATCTATGAAT
GTAAATAACTACCATACAATGTTAAATACGGATAGgtataaaatcttgaa
aaatgaaTCGATAATACTATCGTGCGAATTCAGACAGACTTATATGCAAT
TAATTGGTCTTGTGAAGCCCGGAATTGGAACTGCAGAGTANATACTATCG
TGCGAATTCAGACAGACTTATATGCAATTAATTGGTCTTGTGAAGCCCGG
AATTGGAACTGCAGAgtaaatttgccaaatttgagtacaatcatggtcaa
aatatattgagaattccggttattttaacgttttccgacaagaaagtcga
ttttgggctgtCTCTTTAAGTTAatataatatttcaatttgggatggGTT
GGCCAACTTCTAGGCTATActatgagccttattggactatttttgaactt
ttgtatcctcagatcctaaggtctctAGCGtcaaaactcagagttaaaac
tcaacctttcgaacctactttagagtacttacaaatcgatt
Run BLAST on NCBI

transcript from alignment at sc0000018:990250..991240

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002224 ID=TCONS_00002224|Name=TCONS_00002224|organism=Clytia hemisphaerica|type=transcript|length=991bp|location=Sequence derived from alignment at sc0000018:990250..991240 (Clytia hemisphaerica)
aatcgatttgtaagtactctaaagtaggttcgaaaggttgagttttaact ctgagttttgaCGCTagagaccttaggatctgaggatacaaaagttcaaa aatagtccaataaggctcatagTATAGCCTAGAAGTTGGCCAACccatcc caaattgaaatattatatTAACTTAAAGAGacagcccaaaatcgactttc ttgtcggaaaacgttaaaataaccggaattctcaatatattttgaccatg attgtactcaaatttggcaaatttacTCTGCAGTTCCAATTCCGGGCTTC ACAAGACCAATTAATTGCATATAAGTCTGTCTGAATTCGCACGATAGTAT NTACTCTGCAGTTCCAATTCCGGGCTTCACAAGACCAATTAATTGCATAT AAGTCTGTCTGAATTCGCACGATAGTATTATCGAttcatttttcaagatt ttatacCTATCCGTATTTAACATTGTATGGTAGTTATTTACATTCATAGA TTTAAGTttagtaaatataaaaaattgaccgaaatttttttccttgaTAA GCTTTACCAGTTGTGAGTAGAAGACGAATTTGTTTTGAATAATATGACTG GTCGAAATATCTCAGCTTTAAGTAAGTAAAAAGGAACCTAACTTAAggaa acaaaacagaaaacagacaacaaaaaatgtaaaaggcAAACACCAATTCT TGAACTTAAACAAACTTAAAATGCTACAAAACCATAAAGAACCGAAATAA GACAACGCATACAGTAAATTAAACTTTAGTAAAACGCACCTCTCACACAC AAGACACTCACTCACATCTCTCAGTGTTGAACTGATTTCtgtgtacaaaa attttccctaGATGAATTACAAATGACATGAAAAACGCAATTTTGGGAAT ACAaatccagctggcacacgatgttgttttaacgttcatctaacttCATA tcgacgttgtgaacattagattaatcagagatttgggaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001174XLOC_001174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002224-exon-sc0000018-1491911889:990250..991240TCONS_00002224-exon-sc0000018-1491911889:990250..991240Clytia hemisphaericaexon
TCONS_00002224-exon-sc0000018-1510915933:990250..991240TCONS_00002224-exon-sc0000018-1510915933:990250..991240Clytia hemisphaericaexon
TCONS_00002224-exon-sc0000018-1575043694:990250..991240TCONS_00002224-exon-sc0000018-1575043694:990250..991240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:990250..991240 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0907359 0.132723 0.362209 0.384346 0.734175 0.24751 2.02635 2.18423 1.56746 1.04584 0.551566 0.738892 1.72686 1.57131 0.365997 0.332068 0.476806 0.314171 34.0934 25.272 1.28756 1.34791 1.56054 1.30007 0.879387 1.17375 6.58549 4.5068 0.101007 0.15755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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