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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002222 ID=TCONS_00002222|Name=TCONS_00002222|organism=Clytia hemisphaerica|type=transcript|length=1892bp
aattctgttttttttctttggttGTTTCCAATAAGAAGAATGACGTAATC
TTAACTTGTGCGAAATTCTCTCTTTCACCTTTGCAGGCAACTTGAATGAA
TGCAACTTGAAATACATAATTTATTATCGCTATTTATAGAAATTTTCGTA
GAATTGACAGTTAGTGTGACAGATGCGATGTCGTttgtttttgtcaataa
tttatATACCCCTTACCTGTTGTTATCTCCTGTCCATTTTTAAGTTCCAG
AAAACtaatacaattttttaaatcgcaACCATCCTCGTATGagtaaaaat
aatatttaataTAGTACCATGAATGACATTTCTATGAATTTTATCGATAT
AGAAAATTTAACTTAACTGGATTAACTGGATTTATGAATTTCGATGTCAC
ATCAGAAAATGTTAATCAAATTTCAAACACTTTGTCTTGATAACACGAAG
TAGAAGCATTGTTTAAAGATAATATCGATGCAATGGCTTTTCTCAGTGTT
GTTGTTTTGACCTTATCATTATTACTAAAGTTCGCTTCTACAACGGTGTT
AGATACTCTATCGAACACCGTCAACAAAGGTGCAACTCTGGCTGGAGAAA
ACATCGAATCTTTACTACCCGATGCCGAAGTTGCTTTAGCTGGATCCATC
ATTAATTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAAATAGAATA
CGGAGATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTACGAGGAAG
CTTTTGTTACGGAGAAAGATTCGGCTTTCTTCAAGCTTCATCATGGTGTT
TCTGGCAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCATACATAAT
TCATTTTATGTATGATATCCCCTATGATTTGGGGTTCAAGGAGCATAACC
AACTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGGAACTT
TCCCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGTCGGCT
TTACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTTATGCG
TCTTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGAGTC
TTCCCAACGCGTGAAGAAGATGCCGCTacgaaaataaaggaaaaattgCC
ACATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGACGAAA
AAGATTCGTCCAACCGAACCTCCAGAGCTGCTTATCTCCAGTTATATTCA
TTCTTCATGATTGTTGTTGTCAACCTCGCATATATTGGGCTGGTGTAACT
TGACGATCTTATCGGATGTTATTTCTAACCTGAAgaaccttttttttaaa
tttagcagACACAAACTTGAACAGTGAAAAATGGCACTTTGAAAAACCTT
TGTGACTGATTGAAAACTAGCCATTACAACAGCATAATGAAAAATATACA
GTCAAGCTTGGAAAACAatcttaagttttttttaatttctgttATTATGA
TTTTATTACcaccttttttgaattttattttccgAAGTATCGCGCACATT
TTTTTctatatcaaaattttgtacttttttttacGGTATTTATTAATGGG
AGTTGCTGATGATTCTTGGTGATTCTGGTTTTAGGTGTAATAGACAGACC
CTTTATACAACCCTTGAAAGACCCTTCATTTTTGAATATAATATGAATAT
TTTATGAAGACTAGAAACCCTTGAAAATATATTCCAAGAACCCTGTTAAC
CATTGACACCTTGCTATATAGGGCTCTTTGTATAAAAGTTAATATTTGTG
TTACATTTTATTTTGTGTCTATTTTACGtgattttcattgaaatatttac
gatattttaagaaatgtttgtttcaaattttattcaaaaaag Run BLAST on NCBI protein sequence of TCONS_00002222-protein >TCONS_00002222-protein ID=TCONS_00002222-protein|Name=TCONS_00002222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MAFLSVVVLTLSLLLKFASTTVLDTLSNTVNKGATLAGENIESLLPDAEV
ALAGSIINYSKWSLIEREWEIEYGDVDIPAETVHPGYEEAFVTEKDSAFF
KLHHGVSGKLSWEVKTFNESYIIHFMYDIPYDLGFKEHNQLAIALCSSND
SLCRELSRSDLKSKTYSFSKRRLYRYTIEDVSVCNQDLCVFAKMGTGHKA
TAKIRVFPTREEDAATKIKEKLPHDSFGNQEYDNFLEDEKDSSNRTSRAA
YLQLYSFFMIVVVNLAYIGLV Run BLAST on NCBI transcript from alignment at sc0000018:853490..855381 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002222 ID=TCONS_00002222|Name=TCONS_00002222|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at sc0000018:853490..855381 (Clytia hemisphaerica)
cttttttgaataaaatttgaaacaaacatttcttaaaatatcgtaaatat
ttcaatgaaaatcaCGTAAAATAGACACAAAATAAAATGTAACACAAATA
TTAACTTTTATACAAAGAGCCCTATATAGCAAGGTGTCAATGGTTAACAG
GGTTCTTGGAATATATTTTCAAGGGTTTCTAGTCTTCATAAAATATTCAT
ATTATATTCAAAAATGAAGGGTCTTTCAAGGGTTGTATAAAGGGTCTGTC
TATTACACCTAAAACCAGAATCACCAAGAATCATCAGCAACTCCCATTAA
TAAATACCgtaaaaaaaagtacaaaattttgatatagAAAAAAATGTGCG
CGATACTTcggaaaataaaattcaaaaaaggtgGTAATAAAATCATAATa
acagaaattaaaaaaaacttaagatTGTTTTCCAAGCTTGACTGTATATT
TTTCATTATGCTGTTGTAATGGCTAGTTTTCAATCAGTCACAAAGGTTTT
TCAAAGTGCCATTTTTCACTGTTCAAGTTTGTGTctgctaaatttaaaaa
aaaggttcTTCAGGTTAGAAATAACATCCGATAAGATCGTCAAGTTACAC
CAGCCCAATATATGCGAGGTTGACAACAACAATCATGAAGAATGAATATA
ACTGGAGATAAGCAGCTCTGGAGGTTCGGTTGGACGAATCTTTTTCGTCT
TCCAAAAAATTATCATATTCTTGATTTCCAAAGGAATCATGTGGcaattt
ttcctttattttcgtAGCGGCATCTTCTTCACGCGTTGGGAAGACTCTGA
TTTTGGCTGTGGCTTTGTGTCCAGTACCCATCTTAGCGAAGACGCATAAA
TCCTGGTTACAAACAGACACATCTTCGATGGTATATCTGTAAAGCCGACG
TTTGGAGAAAGAGTACGTCTTCGATTTCAAATCCGATCGGGAAAGTTCCC
GGCAAAGGCTGTCGTTTGATGAGCAGAGAGCAATAGCCAGTTGGTTATGC
TCCTTGAACCCCAAATCATAGGGGATATCATACATAAAATGAATTATGTA
TGATTCATTAAAGGTTTTGACCTCCCATGACAGTTTGCCAGAAACACCAT
GATGAAGCTTGAAGAAAGCCGAATCTTTCTCCGTAACAAAAGCTTCCTCG
TACCCAGGGTGTACAGTCTCTGCAGGGATATCAACATCTCCGTATTCTAT
TTCCCATTCACGTTCGATGAGAGACCATTTACTGTAATTAATGATGGATC
CAGCTAAAGCAACTTCGGCATCGGGTAGTAAAGATTCGATGTTTTCTCCA
GCCAGAGTTGCACCTTTGTTGACGGTGTTCGATAGAGTATCTAACACCGT
TGTAGAAGCGAACTTTAGTAATAATGATAAGGTCAAAACAACAACACTGA
GAAAAGCCATTGCATCGATATTATCTTTAAACAATGCTTCTACTTCGTGT
TATCAAGACAAAGTGTTTGAAATTTGATTAACATTTTCTGATGTGACATC
GAAATTCATAAATCCAGTTAATCCAGTTAAGTTAAATTTTCTATATCGAT
AAAATTCATAGAAATGTCATTCATGGTACTAtattaaatattatttttac
tCATACGAGGATGGTtgcgatttaaaaaattgtattaGTTTTCTGGAACT
TAAAAATGGACAGGAGATAACAACAGGTAAGGGGTATataaattattgac
aaaaacaaACGACATCGCATCTGTCACACTAACTGTCAATTCTACGAAAA
TTTCTATAAATAGCGATAATAAATTATGTATTTCAAGTTGCATTCATTCA
AGTTGCCTGCAAAGGTGAAAGAGAGAATTTCGCACAAGTTAAGATTACGT
CATTCTTCTTATTGGAAACaaccaaagaaaaaaaacagaatt Coding sequence (CDS) from alignment at sc0000018:853490..855381 >TCONS_00002222 ID=TCONS_00002222|Name=TCONS_00002222|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000018:853490..855381 (Clytia hemisphaerica)
TTACACCAGCCCAATATATGCGAGGTTGACAACAACAATCATGAAGAATG
AATATAACTGGAGATAAGCAGCTCTGGAGGTTCGGTTGGACGAATCTTTT
TCGTCTTCCAAAAAATTATCATATTCTTGATTTCCAAAGGAATCATGTGG
caatttttcctttattttcgtAGCGGCATCTTCTTCACGCGTTGGGAAGA
CTCTGATTTTGGCTGTGGCTTTGTGTCCAGTACCCATCTTAGCGAAGACG
CATAAATCCTGGTTACAAACAGACACATCTTCGATGGTATATCTGTAAAG
CCGACGTTTGGAGAAAGAGTACGTCTTCGATTTCAAATCCGATCGGGAAA
GTTCCCGGCAAAGGCTGTCGTTTGATGAGCAGAGAGCAATAGCCAGTTGG
TTATGCTCCTTGAACCCCAAATCATAGGGGATATCATACATAAAATGAAT
TATGTATGATTCATTAAAGGTTTTGACCTCCCATGACAGTTTGCCAGAAA
CACCATGATGAAGCTTGAAGAAAGCCGAATCTTTCTCCGTAACAAAAGCT
TCCTCGTACCCAGGGTGTACAGTCTCTGCAGGGATATCAACATCTCCGTA
TTCTATTTCCCATTCACGTTCGATGAGAGACCATTTACTGTAATTAATGA
TGGATCCAGCTAAAGCAACTTCGGCATCGGGTAGTAAAGATTCGATGTTT
TCTCCAGCCAGAGTTGCACCTTTGTTGACGGTGTTCGATAGAGTATCTAA
CACCGTTGTAGAAGCGAACTTTAGTAATAATGATAAGGTCAAAACAACAA
CACTGAGAAAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002222-exon-sc0000018-1491911889:853490..855381 | TCONS_00002222-exon-sc0000018-1491911889:853490..855381 | Clytia hemisphaerica | exon |
| TCONS_00002222-exon-sc0000018-1510915933:853490..855381 | TCONS_00002222-exon-sc0000018-1510915933:853490..855381 | Clytia hemisphaerica | exon |
| TCONS_00002222-exon-sc0000018-1575043694:853490..855381 | TCONS_00002222-exon-sc0000018-1575043694:853490..855381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:853490..855381 . |
Blast
The following BLAST results are available for this feature:
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