TCONS_00002219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002219
Unique NameTCONS_00002219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002219 ID=TCONS_00002219|Name=TCONS_00002219|organism=Clytia hemisphaerica|type=transcript|length=364bp
CGTCCAATAAAAACACGCGATTTACGTGCGAAAACCACTTTCGTACGCGC
AAaaaccactttcgctttctccgaccaatcagaatgcgCGATATGGGTTA
tttgaggaaacccagggcCAGCACACTCAAAATGGCAGGGAAGTACTGAT
GCACAAAATCATCCATAAATCTATCGCTATCCCAGAATCATTCCTACCAA
GTAGAGCAAGATATATAAACTGTATCAGTTTCCAACAAGTACATGGTCGC
ATTCTGGCCTACAGAAACTCATTTGTACCTTCCACTGTTAATCTTTGGAA
CGATTTAAAACCTGAactttcaaatcaaaagttgaaaattctgGCCAAAC
CAAcgtaattttaa
Run BLAST on NCBI

transcript from alignment at sc0000018:796983..797346

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002219 ID=TCONS_00002219|Name=TCONS_00002219|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at sc0000018:796983..797346 (Clytia hemisphaerica)
ttaaaattacgTTGGTTTGGCcagaattttcaacttttgatttgaaagtT
CAGGTTTTAAATCGTTCCAAAGATTAACAGTGGAAGGTACAAATGAGTTT
CTGTAGGCCAGAATGCGACCATGTACTTGTTGGAAACTGATACAGTTTAT
ATATCTTGCTCTACTTGGTAGGAATGATTCTGGGATAGCGATAGATTTAT
GGATGATTTTGTGCATCAGTACTTCCCTGCCATTTTGAGTGTGCTGgccc
tgggtttcctcaaaTAACCCATATCGcgcattctgattggtcggagaaag
cgaaagtggtttTTGCGCGTACGAAAGTGGTTTTCGCACGTAAATCGCGT
GTTTTTATTGGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001169XLOC_001169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002219-exon-sc0000018-1491911889:796983..797346TCONS_00002219-exon-sc0000018-1491911889:796983..797346Clytia hemisphaericaexon
TCONS_00002219-exon-sc0000018-1510915933:796983..797346TCONS_00002219-exon-sc0000018-1510915933:796983..797346Clytia hemisphaericaexon
TCONS_00002219-exon-sc0000018-1575043694:796983..797346TCONS_00002219-exon-sc0000018-1575043694:796983..797346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:796983..797346 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228889	0.446405	1.2958	0.253547	0	0.243914	0.294272	0	1.35016	0.955652	0.927579	0.152439	0.304453	0.316178	0.519882	0	0	0.352232	1.21657	0.25461	0.663908	0.323831	0.262439	0	0	1.09662	0	0	0	0.258835
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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