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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002218 ID=TCONS_00002218|Name=TCONS_00002218|organism=Clytia hemisphaerica|type=transcript|length=3004bp
AGGAGATGTAGTTGTTGTGGTTGTAGTTGGAGGAGGTGTAGTGGTTGTAG
TTGGAGGAAGCGTAGTGGTTGTAGTTGTAGTTGGAGGAAGTGTAGTGGTT
GTGGTTGTAGTTGGAGGAAGTGAAGTGGTTGTGGTTGTGGTTGTAGTTGG
GGGAGGGGTAGTGGTTGTGGTTGTAGTTGGGGGAGGGGTAGTGGTTGTAG
TTGGAGAAAGTGTagttgttgtagttgtagttGGGGGAGGTGTAGTGGTT
GTAGTTGTAGTTGGAGGAAGAGTAGTGGTTGTAGTTGTAGTTGGGGGAGG
GGTAGTGGTTGTAGTTGGAGGAAGAGTAGTGGTTGTAGTTGTAGTTGGGG
GAGGGGTAGAGGTTGTAGTTGGAGGAAGTGTAGTGGGTGTAGTTGGAGGA
GGGGTAGTGGTTGTAGTTGTAGTTGGGGGAGGGGTAGTGGTTGTAGTTGG
AGGAAGAGTAGTGGTTGTACTTGTAGTTGGAGGAAGTGTAGTGGTTGTAG
TTGTAGTTGGAGGAAGTGTAGTGGTTGTGGTTGTAGTTGGAGGAAGTGTA
GTGGTTGTAGTTGTAGTTGGGGGAGGGGTAGTGGTTGTAGTTGGAGGAGG
GGTAGTGGTTGTAGTTGTAGTTGGGGGAGGGGTAGTGGTTGTAGTTGGAG
GAAGAGTAGTGGTTTTAGTTGTAGTTGGAGGAAGTGTAGTGGTTGTAGTT
GTAGTTGAAGGAAGCTTGGTGGTTGTAGTTGTAGTTGGAGGAAGAATAGT
GGTTGTAGTTGTAGTTGGGGGAGGGGTAGTTGTTGTAGTTGGAGGAAGAG
TAGTGGTTGTAGTTGTAGTTGGAGGAAGTGTAGTGGTTGTAGTTGTAGTT
GGAGGAAGAGTAGTGGTTGTAGTTGTAGTTGGGGGAGGGGTAGTGGTTGT
AGTTGGAGGAAGAGTAGTGGTTGTAGTTGTAGTTGGAGGGAGTGTAGTGG
TTGTAGTTGTAGTTGGAGGAAGAGTAGTGGTTGTAGTTGTAGTTGGGGGA
GGGGTAGTGGTTGTAGTTGGAGGAAGTGTAGTGGTTGTAGTTGTAGTTGG
AGGGAGTGTAGTGGTTGTAGTTGTAGTTGGAGGAAGAGTAGTGGTTGTAG
TTGTAGTTAGGGGAGGGGTAGTGGTTGTAGTTGGAGGAAGAGTAGTGGTT
GTAGTTGTAGTTGAAGGAAGCGTGGTGGTTGTAGTTGTAGTTGGAGGAAG
AATAGTGGTTGTAGTTGTAGTTGGGGGAGGGGTAGTGGCTGTAGTTGGAG
GAAGAGTAGTGGTTGTAGTTGTAGTTGGAGGAAGTGTAGTGGTTGTAGTT
GTAGTTGGAGGAAGAGTAGTGGTTGTAGTTGGAGGAAGCGTGGTGGCCGT
AGTTGTAGTTGAAGGAAGCGTGGTGGTTGTAGTTGTAGTTGGAGGAAGAG
TAGTGGTTGTAGTTGGAGGAAGGGTAGTGGTTGTAGTTGAAGTTGGGGGA
GGAGTAGTGGTTGTAGTTGTAGTTGGAGGAAGCGTAGTGGTTGTAGTTGT
AGTTGGAGGAAGGATAGTGGTTGTGGTTGGAGGAAGCGTTGTAGTTGTAG
TTGGAGGAAGCGTAGTGGTTGTAGTTGTAGTTGGAGGAAGTGTAGTGGTT
GTAGTTGTAGTTGGAGGAAGTGCAGTGATTAGAGGAGGGGTAGTGGTTGT
GGTTGGAGGTGGGGTAGTCGAAGTAGTAAAAGTTGTTGTACAAATACAAG
TTGTTGTTGAAGGGTTATTGGTTGATGGCATTGTCGTGGTCGTTGTTGTT
TTAGTAGAGGTTGTTATTATTGTTGTTTGAGTTGATGTTGTGTTTGGGAC
AGGTGTTGCCAAAGTAGATGCTGTAGTTGTGTTGCCACTTGAGGATGGTG
TGAGGGATGTGTTAGAAGTTAAGTTGAGATTTGTTGTTGGTTGTTGTGTT
GACGTTGTTGTTGCGATGTTCACTGTGGAAGTTGCGACGGTTGTGTTAGA
GGTCGAATTTGTTGTTATAGCCGTTGAAGTTGCTGGTTCTGTCGAGGTGG
TTGTTGTTTTGGTTGTTGTAATGGGTGTTGTCGTTGTGAAGAGTGTAGTA
GGCGAAGCCTGTGACGTAGTTGTACACTCACATATTGTTTGCTGTGGGTT
GATTGTTGAAGGAGAGACACTAGCTGTCGTAGTGGTGGTGGCAGATGGAT
TAGCTGTAGTGATCGAAGCAGTAGCAGAAGCTGTATTTGTTGTAGTTGGA
GGAGATGTTGTGTTTGTGGTCGTTGAAAGTGGAAGGGTAGTGGTTGTTGT
CAAGCTGGAAGGAGTTGCAATTGTTGTATTGGTCTGAGGAGGCGTATTCG
TGGTAGTTGTCTGAGGAGCAGTGGTTGTGGTTGTAGTCGGAGGAGGGGTA
TTGGTACTGGTTGTGGCAGGAagggttgttgttgttgaagtaGCAGACGG
TTGGTTGGTTGCCACCGTAGTTGTCATTGTTGTGGTTGATCCGAATGTCG
TGGTTGCAAGACATATTAACAATACAAGTTTTATTAAAACcattttttag
ctgaaaattGATTAGATAAAGTTAATCGCAAATTAGAAATGTTTGGATAA
CAGCCCTAACAGGTAGGCGGAACGCTAAAAACAAAGCTTTATAATCTACA
AAAGTTTTCTAGCCGTAGTCTCTTCGGACtatcatttttaaacaaataaa
TTCCATACTACAGTAGActactcccggttattcgaaccTGCACTTATTCG
ATTGATTTGCGGGTTATTTGAAGTGAGATAGCTTTCCCCTTGGATCTGCC
TATCTACCCAACTCAAACAAGTCTCGGTTATTCGAGCTTAAGTTCATTCG
aactttcagttattcgaagtgTGTGTATTTCCCTATAGACTAAAtcactt
cgaataaccgggagtttactgtttttattatttaaaacTTCACTGAGATA
GtaagttttgaagtttttactTTATATGACTTATTAGGTGCTACTATTTA
TGAACTTActgtaaaaaaatcatttcaatagaTCTTTGATTATGTAATCC
AAAC Run BLAST on NCBI protein sequence of TCONS_00002218-protein >TCONS_00002218-protein ID=TCONS_00002218-protein|Name=TCONS_00002218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=831bp
MVLIKLVLLICLATTTFGSTTTMTTTVATNQPSATSTTTTLPATTSTNTP
PPTTTTTTAPQTTTTNTPPQTNTTIATPSSLTTTTTLPLSTTTNTTSPPT
TTNTASATASITTANPSATTTTTASVSPSTINPQQTICECTTTSQASPTT
LFTTTTPITTTKTTTTSTEPATSTAITTNSTSNTTVATSTVNIATTTSTQ
QPTTNLNLTSNTSLTPSSSGNTTTASTLATPVPNTTSTQTTIITTSTKTT
TTTTMPSTNNPSTTTCICTTTFTTSTTPPPTTTTTPPLITALPPTTTTTT
TLPPTTTTTTTLPPTTTTTLPPTTTTILPPTTTTTTTLPPTTTTTTTPPP
TSTTTTTLPPTTTTTLPPTTTTTTTLPSTTTTATTLPPTTTTTLPPTTTT
TTTLPPTTTTTTTLPPTTATTPPPTTTTTTILPPTTTTTTTLPSTTTTTT
TLPPTTTTTPPLTTTTTTTLPPTTTTTTTLPPTTTTTTTLPPTTTTTPPP
TTTTTTTLPPTTTTTTTLPPTTTTTTTLPPTTTTTPPPTTTTTTTLPPTT
TTTTTLPPTTTTTTTLPPTTTTTPPPTTTTTTILPPTTTTTTKLPSTTTT
TTTLPPTTTKTTTLPPTTTTTPPPTTTTTTTPPPTTTTTPPPTTTTTTTL
PPTTTTTTTLPPTTTTTTTLPPTTSTTTTLPPTTTTTPPPTTTTTTTPPP
TTPTTLPPTTTSTPPPTTTTTTTLPPTTTTTPPPTTTTTTTLPPTTTTTT
TPPPTTTTTTTLSPTTTTTPPPTTTTTTTPPPTTTTTTTTSLPPTTTTTT
TLPPTTTTTTTLPPTTTTTPPPTTTTTTTSP Run BLAST on NCBI transcript from alignment at sc0000018:750739..753742 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002218 ID=TCONS_00002218|Name=TCONS_00002218|organism=Clytia hemisphaerica|type=transcript|length=3004bp|location=Sequence derived from alignment at sc0000018:750739..753742 (Clytia hemisphaerica)
GTTTGGATTACATAATCAAAGAtctattgaaatgatttttttacagTAAG
TTCATAAATAGTAGCACCTAATAAGTCATATAAagtaaaaacttcaaaac
ttaCTATCTCAGTGAAgttttaaataataaaaacagtaaactcccggtta
ttcgaagtgaTTTAGTCTATAGGGAAATACACAcacttcgaataactgaa
agttCGAATGAACTTAAGCTCGAATAACCGAGACTTGTTTGAGTTGGGTA
GATAGGCAGATCCAAGGGGAAAGCTATCTCACTTCAAATAACCCGCAAAT
CAATCGAATAAGTGCAggttcgaataaccgggagtagTCTACTGTAGTAT
GGAAtttatttgtttaaaaatgataGTCCGAAGAGACTACGGCTAGAAAA
CTTTTGTAGATTATAAAGCTTTGTTTTTAGCGTTCCGCCTACCTGTTAGG
GCTGTTATCCAAACATTTCTAATTTGCGATTAACTTTATCTAATCaattt
tcagctaaaaaatgGTTTTAATAAAACTTGTATTGTTAATATGTCTTGCA
ACCACGACATTCGGATCAACCACAACAATGACAACTACGGTGGCAACCAA
CCAACCGTCTGCtacttcaacaacaacaaccctTCCTGCCACAACCAGTA
CCAATACCCCTCCTCCGACTACAACCACAACCACTGCTCCTCAGACAACT
ACCACGAATACGCCTCCTCAGACCAATACAACAATTGCAACTCCTTCCAG
CTTGACAACAACCACTACCCTTCCACTTTCAACGACCACAAACACAACAT
CTCCTCCAACTACAACAAATACAGCTTCTGCTACTGCTTCGATCACTACA
GCTAATCCATCTGCCACCACCACTACGACAGCTAGTGTCTCTCCTTCAAC
AATCAACCCACAGCAAACAATATGTGAGTGTACAACTACGTCACAGGCTT
CGCCTACTACACTCTTCACAACGACAACACCCATTACAACAACCAAAACA
ACAACCACCTCGACAGAACCAGCAACTTCAACGGCTATAACAACAAATTC
GACCTCTAACACAACCGTCGCAACTTCCACAGTGAACATCGCAACAACAA
CGTCAACACAACAACCAACAACAAATCTCAACTTAACTTCTAACACATCC
CTCACACCATCCTCAAGTGGCAACACAACTACAGCATCTACTTTGGCAAC
ACCTGTCCCAAACACAACATCAACTCAAACAACAATAATAACAACCTCTA
CTAAAACAACAACGACCACGACAATGCCATCAACCAATAACCCTTCAACA
ACAACTTGTATTTGTACAACAACTTTTACTACTTCGACTACCCCACCTCC
AACCACAACCACTACCCCTCCTCTAATCACTGCACTTCCTCCAACTACAA
CTACAACCACTACACTTCCTCCAACTACAACTACAACCACTACGCTTCCT
CCAACTACAACTACAACGCTTCCTCCAACCACAACCACTATCCTTCCTCC
AACTACAACTACAACCACTACGCTTCCTCCAACTACAACTACAACCACTA
CTCCTCCCCCAACTTCAACTACAACCACTACCCTTCCTCCAACTACAACC
ACTACTCTTCCTCCAACTACAACTACAACCACCACGCTTCCTTCAACTAC
AACTACGGCCACCACGCTTCCTCCAACTACAACCACTACTCTTCCTCCAA
CTACAACTACAACCACTACACTTCCTCCAACTACAACTACAACCACTACT
CTTCCTCCAACTACAGCCACTACCCCTCCCCCAACTACAACTACAACCAC
TATTCTTCCTCCAACTACAACTACAACCACCACGCTTCCTTCAACTACAA
CTACAACCACTACTCTTCCTCCAACTACAACCACTACCCCTCCCCTAACT
ACAACTACAACCACTACTCTTCCTCCAACTACAACTACAACCACTACACT
CCCTCCAACTACAACTACAACCACTACACTTCCTCCAACTACAACCACTA
CCCCTCCCCCAACTACAACTACAACCACTACTCTTCCTCCAACTACAACT
ACAACCACTACACTCCCTCCAACTACAACTACAACCACTACTCTTCCTCC
AACTACAACCACTACCCCTCCCCCAACTACAACTACAACCACTACTCTTC
CTCCAACTACAACTACAACCACTACACTTCCTCCAACTACAACTACAACC
ACTACTCTTCCTCCAACTACAACAACTACCCCTCCCCCAACTACAACTAC
AACCACTATTCTTCCTCCAACTACAACTACAACCACCAAGCTTCCTTCAA
CTACAACTACAACCACTACACTTCCTCCAACTACAACTAAAACCACTACT
CTTCCTCCAACTACAACCACTACCCCTCCCCCAACTACAACTACAACCAC
TACCCCTCCTCCAACTACAACCACTACCCCTCCCCCAACTACAACTACAA
CCACTACACTTCCTCCAACTACAACCACAACCACTACACTTCCTCCAACT
ACAACTACAACCACTACACTTCCTCCAACTACAAGTACAACCACTACTCT
TCCTCCAACTACAACCACTACCCCTCCCCCAACTACAACTACAACCACTA
CCCCTCCTCCAACTACACCCACTACACTTCCTCCAACTACAACCTCTACC
CCTCCCCCAACTACAACTACAACCACTACTCTTCCTCCAACTACAACCAC
TACCCCTCCCCCAACTACAACTACAACCACTACTCTTCCTCCAACTACAA
CTACAACCACTACACCTCCCCCaactacaactacaacaactACACTTTCT
CCAACTACAACCACTACCCCTCCCCCAACTACAACCACAACCACTACCCC
TCCCCCAACTACAACCACAACCACAACCACTTCACTTCCTCCAACTACAA
CCACAACCACTACACTTCCTCCAACTACAACTACAACCACTACGCTTCCT
CCAACTACAACCACTACACCTCCTCCAACTACAACCACAACAACTACATC
TCCT Coding sequence (CDS) from alignment at sc0000018:750739..753742 >TCONS_00002218 ID=TCONS_00002218|Name=TCONS_00002218|organism=Clytia hemisphaerica|type=CDS|length=2493bp|location=Sequence derived from alignment at sc0000018:750739..753742 (Clytia hemisphaerica)
atgGTTTTAATAAAACTTGTATTGTTAATATGTCTTGCAACCACGACATT
CGGATCAACCACAACAATGACAACTACGGTGGCAACCAACCAACCGTCTG
CtacttcaacaacaacaaccctTCCTGCCACAACCAGTACCAATACCCCT
CCTCCGACTACAACCACAACCACTGCTCCTCAGACAACTACCACGAATAC
GCCTCCTCAGACCAATACAACAATTGCAACTCCTTCCAGCTTGACAACAA
CCACTACCCTTCCACTTTCAACGACCACAAACACAACATCTCCTCCAACT
ACAACAAATACAGCTTCTGCTACTGCTTCGATCACTACAGCTAATCCATC
TGCCACCACCACTACGACAGCTAGTGTCTCTCCTTCAACAATCAACCCAC
AGCAAACAATATGTGAGTGTACAACTACGTCACAGGCTTCGCCTACTACA
CTCTTCACAACGACAACACCCATTACAACAACCAAAACAACAACCACCTC
GACAGAACCAGCAACTTCAACGGCTATAACAACAAATTCGACCTCTAACA
CAACCGTCGCAACTTCCACAGTGAACATCGCAACAACAACGTCAACACAA
CAACCAACAACAAATCTCAACTTAACTTCTAACACATCCCTCACACCATC
CTCAAGTGGCAACACAACTACAGCATCTACTTTGGCAACACCTGTCCCAA
ACACAACATCAACTCAAACAACAATAATAACAACCTCTACTAAAACAACA
ACGACCACGACAATGCCATCAACCAATAACCCTTCAACAACAACTTGTAT
TTGTACAACAACTTTTACTACTTCGACTACCCCACCTCCAACCACAACCA
CTACCCCTCCTCTAATCACTGCACTTCCTCCAACTACAACTACAACCACT
ACACTTCCTCCAACTACAACTACAACCACTACGCTTCCTCCAACTACAAC
TACAACGCTTCCTCCAACCACAACCACTATCCTTCCTCCAACTACAACTA
CAACCACTACGCTTCCTCCAACTACAACTACAACCACTACTCCTCCCCCA
ACTTCAACTACAACCACTACCCTTCCTCCAACTACAACCACTACTCTTCC
TCCAACTACAACTACAACCACCACGCTTCCTTCAACTACAACTACGGCCA
CCACGCTTCCTCCAACTACAACCACTACTCTTCCTCCAACTACAACTACA
ACCACTACACTTCCTCCAACTACAACTACAACCACTACTCTTCCTCCAAC
TACAGCCACTACCCCTCCCCCAACTACAACTACAACCACTATTCTTCCTC
CAACTACAACTACAACCACCACGCTTCCTTCAACTACAACTACAACCACT
ACTCTTCCTCCAACTACAACCACTACCCCTCCCCTAACTACAACTACAAC
CACTACTCTTCCTCCAACTACAACTACAACCACTACACTCCCTCCAACTA
CAACTACAACCACTACACTTCCTCCAACTACAACCACTACCCCTCCCCCA
ACTACAACTACAACCACTACTCTTCCTCCAACTACAACTACAACCACTAC
ACTCCCTCCAACTACAACTACAACCACTACTCTTCCTCCAACTACAACCA
CTACCCCTCCCCCAACTACAACTACAACCACTACTCTTCCTCCAACTACA
ACTACAACCACTACACTTCCTCCAACTACAACTACAACCACTACTCTTCC
TCCAACTACAACAACTACCCCTCCCCCAACTACAACTACAACCACTATTC
TTCCTCCAACTACAACTACAACCACCAAGCTTCCTTCAACTACAACTACA
ACCACTACACTTCCTCCAACTACAACTAAAACCACTACTCTTCCTCCAAC
TACAACCACTACCCCTCCCCCAACTACAACTACAACCACTACCCCTCCTC
CAACTACAACCACTACCCCTCCCCCAACTACAACTACAACCACTACACTT
CCTCCAACTACAACCACAACCACTACACTTCCTCCAACTACAACTACAAC
CACTACACTTCCTCCAACTACAAGTACAACCACTACTCTTCCTCCAACTA
CAACCACTACCCCTCCCCCAACTACAACTACAACCACTACCCCTCCTCCA
ACTACACCCACTACACTTCCTCCAACTACAACCTCTACCCCTCCCCCAAC
TACAACTACAACCACTACTCTTCCTCCAACTACAACCACTACCCCTCCCC
CAACTACAACTACAACCACTACTCTTCCTCCAACTACAACTACAACCACT
ACACCTCCCCCaactacaactacaacaactACACTTTCTCCAACTACAAC
CACTACCCCTCCCCCAACTACAACCACAACCACTACCCCTCCCCCAACTA
CAACCACAACCACAACCACTTCACTTCCTCCAACTACAACCACAACCACT
ACACTTCCTCCAACTACAACTACAACCACTACGCTTCCTCCAACTACAAC
CACTACACCTCCTCCAACTACAACCACAACAACTACATCTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002218-exon-sc0000018-1491911889:750739..753742 | TCONS_00002218-exon-sc0000018-1491911889:750739..753742 | Clytia hemisphaerica | exon |
| TCONS_00002218-exon-sc0000018-1510915933:750739..753742 | TCONS_00002218-exon-sc0000018-1510915933:750739..753742 | Clytia hemisphaerica | exon |
| TCONS_00002218-exon-sc0000018-1575043694:750739..753742 | TCONS_00002218-exon-sc0000018-1575043694:750739..753742 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:750739..753742 . |
Blast
The following BLAST results are available for this feature:
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