TCONS_00002216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002216
Unique NameTCONS_00002216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002216 ID=TCONS_00002216|Name=TCONS_00002216|organism=Clytia hemisphaerica|type=transcript|length=645bp
AGACAATATATTTAATGTATTACTTTTAGTTATCTTAGACACACTTTTGA
TAAGCATAACGTACAATCAGATCTATGGAACTGTTGTTCAATCTCGAATG
TAAGTTGGTTTAAGCATGATAAGGCTGATAAAAATTAACTTATACTAAGC
ATAACGAGACTCGCTAAATTCGTAATTAAAGTTACTGATTTTGTCTTTAA
CATAGCACACACCCAAGTTATTACAAGCTTACATTTTCAAAGTGTGTCca
gcaaaagtgaaaaatattatcACAGAAACTAAAATAGAAATCTTCAAGAA
ATAGTTCCGCATCAAGTTGAAACAGGATAAAGTTGCGATTTTTCTTGGCC
CATTGTGTTACgcaaaaaacaaacaagaaaaattgttctaaaattttgca
ttatttataaaatcaaaGTTGGTCGTTATGTACACCTATAAATGTCATAT
AACGATATGTTAAAAAATGTTTCGTGTTTTTGTTCTCAGCGTGTGTTCGT
TACTCATTCGGCGGTTTCCGCAGCTTCTTGTGTCGAGTCAGCACTTTCCA
TCGGTTGTTCGGTTGTCTCCTTAACGACCGTTTCTTCTTGTTTTGCTTCC
GTCTCCATGGCAGCTTCTTCCTTTTTCTCTTCCGTTTTGGAATCT
Run BLAST on NCBI

transcript from alignment at sc0000018:695058..695702

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002216 ID=TCONS_00002216|Name=TCONS_00002216|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at sc0000018:695058..695702 (Clytia hemisphaerica)
AGATTCCAAAACGGAAGAGAAAAAGGAAGAAGCTGCCATGGAGACGGAAG
CAAAACAAGAAGAAACGGTCGTTAAGGAGACAACCGAACAACCGATGGAA
AGTGCTGACTCGACACAAGAAGCTGCGGAAACCGCCGAATGAGTAACGAA
CACACGCTGAGAACAAAAACACGAAACATTTTTTAACATATCGTTATATG
ACATTTATAGGTGTACATAACGACCAACtttgattttataaataatgcaa
aattttagaacaatttttcttgtttgttttttgcGTAACACAATGGGCCA
AGAAAAATCGCAACTTTATCCTGTTTCAACTTGATGCGGAACTATTTCTT
GAAGATTTCTATTTTAGTTTCTGTgataatatttttcacttttgctgGAC
ACACTTTGAAAATGTAAGCTTGTAATAACTTGGGTGTGTGCTATGTTAAA
GACAAAATCAGTAACTTTAATTACGAATTTAGCGAGTCTCGTTATGCTTA
GTATAAGTTAATTTTTATCAGCCTTATCATGCTTAAACCAACTTACATTC
GAGATTGAACAACAGTTCCATAGATCTGATTGTACGTTATGCTTATCAAA
AGTGTGTCTAAGATAACTAAAAGTAATACATTAAATATATTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001166XLOC_001166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002216-exon-sc0000018-1491911889:695058..695702TCONS_00002216-exon-sc0000018-1491911889:695058..695702Clytia hemisphaericaexon
TCONS_00002216-exon-sc0000018-1510915933:695058..695702TCONS_00002216-exon-sc0000018-1510915933:695058..695702Clytia hemisphaericaexon
TCONS_00002216-exon-sc0000018-1575043694:695058..695702TCONS_00002216-exon-sc0000018-1575043694:695058..695702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:695058..695702 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.7946	23.3288	30.588	28.7538	51.3552	35.6389	41.7415	47.1089	59.8614	57.7556	69.3318	66.386	40.6421	46.4785	45.3272	39.4202	46.058	35.3747	23.6143	19.3702	23.6022	21.9886	19.5927	19.4242	28.7429	39.765	24.8814	24.1726	14.902	17.8513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top