TCONS_00002212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002212
Unique NameTCONS_00002212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002212 ID=TCONS_00002212|Name=TCONS_00002212|organism=Clytia hemisphaerica|type=transcript|length=501bp
aattcattaaaatttgaaaagtgtATCCAATagggtcgacttttggttat
ttttaccATATGTCAGGGCGGGTTTCGTAGGAAATAGGAAATTTTCTATG
ATATGGTCCAAATTTAATCGAAAGGGTAAAAAAGTTGCTTAATCTTGGTT
ATTATCCTGACAGTTTTAAATTGAACAGCAGCAGTCAAGATAATCATTCT
CCGGAGAAATCTCAGCCTGAACTTAGCATCAAATTAATTAGAAACAAGCC
GGAGAGCTGAGAATCCGAAAAACTCAAGtccaaatacaccttttcgttgt
tttcgttttcgaccgtagccgccaattgccgcgcgggtatttttttttcc
gctttatcccactaaaaccgtcccagtctttttctCGCACCTATAGACAG
TAGAAAAacgtgtcaaaaaaggattggattgagtttagggggataattat
aAACAATTacgtggcacgcgcctgaccgcgcgactacggtcgaaaaggtg
t
Run BLAST on NCBI

transcript from alignment at sc0000018:565748..566248

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002212 ID=TCONS_00002212|Name=TCONS_00002212|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at sc0000018:565748..566248 (Clytia hemisphaerica)
acaccttttcgaccgtagtcgcgcggtcaggcgcgtgccacgtAATTGTT
tataattatccccctaaactcaatccaatccttttttgacacgtTTTTCT
ACTGTCTATAGGTGCGagaaaaagactgggacggttttagtgggataaag
cggaaaaaaaaatacccgcgcggcaattggcggctacggtcgaaaacgaa
aacaacgaaaaggtgtatttggaCTTGAGTTTTTCGGATTCTCAGCTCTC
CGGCTTGTTTCTAATTAATTTGATGCTAAGTTCAGGCTGAGATTTCTCCG
GAGAATGATTATCTTGACTGCTGCTGTTCAATTTAAAACTGTCAGGATAA
TAACCAAGATTAAGCAACTTTTTTACCCTTTCGATTAAATTTGGACCATA
TCATAGAAAATTTCCTATTTCCTACGAAACCCGCCCTGACATATggtaaa
aataaccaaaagtcgaccctATTGGATacacttttcaaattttaatgaat
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001162XLOC_001162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002212-exon-sc0000018-1491911889:565748..566248TCONS_00002212-exon-sc0000018-1491911889:565748..566248Clytia hemisphaericaexon
TCONS_00002212-exon-sc0000018-1510915933:565748..566248TCONS_00002212-exon-sc0000018-1510915933:565748..566248Clytia hemisphaericaexon
TCONS_00002212-exon-sc0000018-1575043694:565748..566248TCONS_00002212-exon-sc0000018-1575043694:565748..566248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:565748..566248 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.242998	0.121524	0.23471	0.559127	0.165147	0.264014	0.793848	0	0.308381	0	0.374168	0	1.55117	1.68885	0.482938	0.286385	0	0	0.849051	0.540611	0	0.343793	0	0.352044	0.859376	0.248577	0.670393	0.355599	0.375038	0.250566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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