TCONS_00002210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002210
Unique NameTCONS_00002210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002210 ID=TCONS_00002210|Name=TCONS_00002210|organism=Clytia hemisphaerica|type=transcript|length=360bp
attttgattttgattttgatgtgttctacaaaatacattaaaaatacaaa
ttagttAATTAACTTAAACAGTAACAATTTCATAATCTCATTCAATATGT
TTACGAGAAATTTTAATCATGGTATCGTCATAAATAAAGAAATAATTAGC
AAACGTCACAGAAACAGGACATTGATATTTAAAACACTTTCTCACTAGGC
GGTTGGTTCATATATTCAATTTGCAACCTGGGGGTAGATTCTCTTAATTC
TCCTACAATCACAGACAAAAGGTTgttgactttcaaaaatacatgaaaaa
tttcaaaataagctctgaaaacccatttttaccaGGGTCaatatgttgtt
tttattggat
Run BLAST on NCBI

transcript from alignment at sc0000018:530339..530698

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002210 ID=TCONS_00002210|Name=TCONS_00002210|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0000018:530339..530698 (Clytia hemisphaerica)
atccaataaaaacaacatattGACCCtggtaaaaatgggttttcagagct
tattttgaaatttttcatgtatttttgaaagtcaacAACCTTTTGTCTGT
GATTGTAGGAGAATTAAGAGAATCTACCCCCAGGTTGCAAATTGAATATA
TGAACCAACCGCCTAGTGAGAAAGTGTTTTAAATATCAATGTCCTGTTTC
TGTGACGTTTGCTAATTATTTCTTTATTTATGACGATACCATGATTAAAA
TTTCTCGTAAACATATTGAATGAGATTATGAAATTGTTACTGTTTAAGTT
AATTaactaatttgtatttttaatgtattttgtagaacacatcaaaatca
aaatcaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001160XLOC_001160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002210-exon-sc0000018-1491911889:530339..530698TCONS_00002210-exon-sc0000018-1491911889:530339..530698Clytia hemisphaericaexon
TCONS_00002210-exon-sc0000018-1510915933:530339..530698TCONS_00002210-exon-sc0000018-1510915933:530339..530698Clytia hemisphaericaexon
TCONS_00002210-exon-sc0000018-1575043694:530339..530698TCONS_00002210-exon-sc0000018-1575043694:530339..530698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:530339..530698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.234952	0.266515	0.266025	0	0	0.250376	0	0.565584	0	0.980967	0	1.41622	0.156259	0	0.266827	0	0	0.180781	0	0.52271	0.45433	1.74098	0.538782	0	0	0.249132	0.322166	0.343824	0.260778	0.265692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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