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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002209 ID=TCONS_00002209|Name=TCONS_00002209|organism=Clytia hemisphaerica|type=transcript|length=1316bp
ATCGatataaaattcataaaaaagtaaCTAATAAATAAAATGATATTTAA
TATATAAGTAATACTGTAGATTTCTTCCTTCTTTACTATATGGAAGAATT
TCTTTCTTCCGagttcatttcttttttccttttgcTTTCTTTTCGACTGT
ACAAACGTAGTGTTCCCGCTATAGCGGTCGTAATAAGATCACCCTGATTT
CTACGCACAATCTTACGAAAATAATTCGATATTTCACGGCGTAAAACACT
ATTCTTACGACCGTAAATGAAAACATTGATGGCGCTATTACAATATCCGA
CAAGTAAACAACCCCAGTATAGTTTCATCATGATTGAGTCACGCGTGAAA
TTTGTAAGTGAGTCTGTGTTATCGTAATTATACAGCGAAATTATGAAGCT
TATCATCAAATAAGGAAACCAGCATAAAAAGAACGACAATACGACAAAGA
ATACTGTCCGTGTCGCTTGTCCTTGTAACCGGTTTTTACGGCGACGTCCG
ACGTTTTTATTCCCGGTGGTCTGCGAATCTTGATGCACCGGCACGACGTT
TTGAACTTTCGAGTATATCTTACTGTACGAGCATAccattaaaaatgaaa
taagcaGCACAATGAATAAACTGATGGAATGGTTGAGTAAGCTATCATAC
CAAAATAAAGGCAACACGCCAAAAGCTAAAGACATAACCCATAACAGTGT
AATGGCAACCTGTGCACGCTTTTTTGTGACgtaaaaagtatattttaagG
GGTACACAATATACATATAACGTTCCAAAGTGATAGGTAGCACTCCTACC
CCAGAAGCCATTGCGGATATCCAGGCAGACGTATAGTACACGTTGTCAAG
GGAACAATAATGCCTGGTGCCTAGCAACATGGTACATATAAATAATGGCT
GAACGATGGATGCTACTAACACGTCCGCAATACAAACTGAGGCGATAAGT
AAGTAAGTGGGTTCGTTTCTCAGGTCGTGTTTATGAAGTATAATGTGGGC
GGTTAATATGTTTCCAGGAAGGGCGATACATATAGCAAGGACGGTGATGG
CTACAAAGAAGGGCGCTGTTGATGTATTATCAGAATCCACCCATAAGAAT
CTACACTCCATCCCTCATCTGTTGATGGATCTGTGAGGAAAATGCCGGAT
GACTGATTTGGTATATCTATTATTGCTTATCtgaaaagaaagagaaatta
aaactttttcatGAACAGAAAgagaaattaaaactttttcattcaataga
TCATTCGATTGATCGAATCTGCATTGAAGAATCTCAATGTGAAAGTCTTG
AAACGGTGTTCACAAT Run BLAST on NCBI protein sequence of TCONS_00002209-protein >TCONS_00002209-protein ID=TCONS_00002209-protein|Name=TCONS_00002209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MECRFLWVDSDNTSTAPFFVAITVLAICIALPGNILTAHIILHKHDLRNE
PTYLLIASVCIADVLVASIVQPLFICTMLLGTRHYCSLDNVYYTSAWISA
MASGVGVLPITLERYMYIVYPLKYTFYVTKKRAQVAITLLWVMSLAFGVL
PLFWYDSLLNHSISLFIVLLISFLMVCSYSKIYSKVQNVVPVHQDSQTTG
NKNVGRRRKNRLQGQATRTVFFVVLSFFLCWFPYLMISFIISLYNYDNTD
SLTNFTRDSIMMKLYWGCLLVGYCNSAINVFIYGRKNSVLRREISNYFRK
IVRRNQGDLITTAIAGTLRLYSRKESKRKKEMNSEERNSSI Run BLAST on NCBI transcript from alignment at sc0000018:517730..519045 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002209 ID=TCONS_00002209|Name=TCONS_00002209|organism=Clytia hemisphaerica|type=transcript|length=1316bp|location=Sequence derived from alignment at sc0000018:517730..519045 (Clytia hemisphaerica)
ATTGTGAACACCGTTTCAAGACTTTCACATTGAGATTCTTCAATGCAGAT
TCGATCAATCGAATGAtctattgaatgaaaaagttttaatttctcTTTCT
GTTCatgaaaaagttttaatttctctttcttttcaGATAAGCAATAATAG
ATATACCAAATCAGTCATCCGGCATTTTCCTCACAGATCCATCAACAGAT
GAGGGATGGAGTGTAGATTCTTATGGGTGGATTCTGATAATACATCAACA
GCGCCCTTCTTTGTAGCCATCACCGTCCTTGCTATATGTATCGCCCTTCC
TGGAAACATATTAACCGCCCACATTATACTTCATAAACACGACCTGAGAA
ACGAACCCACTTACTTACTTATCGCCTCAGTTTGTATTGCGGACGTGTTA
GTAGCATCCATCGTTCAGCCATTATTTATATGTACCATGTTGCTAGGCAC
CAGGCATTATTGTTCCCTTGACAACGTGTACTATACGTCTGCCTGGATAT
CCGCAATGGCTTCTGGGGTAGGAGTGCTACCTATCACTTTGGAACGTTAT
ATGTATATTGTGTACCCcttaaaatatactttttacGTCACAAAAAAGCG
TGCACAGGTTGCCATTACACTGTTATGGGTTATGTCTTTAGCTTTTGGCG
TGTTGCCTTTATTTTGGTATGATAGCTTACTCAACCATTCCATCAGTTTA
TTCATTGTGCtgcttatttcatttttaatggTATGCTCGTACAGTAAGAT
ATACTCGAAAGTTCAAAACGTCGTGCCGGTGCATCAAGATTCGCAGACCA
CCGGGAATAAAAACGTCGGACGTCGCCGTAAAAACCGGTTACAAGGACAA
GCGACACGGACAGTATTCTTTGTCGTATTGTCGTTCTTTTTATGCTGGTT
TCCTTATTTGATGATAAGCTTCATAATTTCGCTGTATAATTACGATAACA
CAGACTCACTTACAAATTTCACGCGTGACTCAATCATGATGAAACTATAC
TGGGGTTGTTTACTTGTCGGATATTGTAATAGCGCCATCAATGTTTTCAT
TTACGGTCGTAAGAATAGTGTTTTACGCCGTGAAATATCGAATTATTTTC
GTAAGATTGTGCGTAGAAATCAGGGTGATCTTATTACGACCGCTATAGCG
GGAACACTACGTTTGTACAGTCGAAAAGAAAgcaaaaggaaaaaagaaat
gaactCGGAAGAAAGAAATTCTTCCATATAGTAAAGAAGGAAGAAATCTA
CAGTATTACTTATATATTAAATATCATTTTATTTATTAGttactttttta
tgaattttatatCGAT Coding sequence (CDS) from alignment at sc0000018:517730..519045 >TCONS_00002209 ID=TCONS_00002209|Name=TCONS_00002209|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000018:517730..519045 (Clytia hemisphaerica)
ATGGAGTGTAGATTCTTATGGGTGGATTCTGATAATACATCAACAGCGCC
CTTCTTTGTAGCCATCACCGTCCTTGCTATATGTATCGCCCTTCCTGGAA
ACATATTAACCGCCCACATTATACTTCATAAACACGACCTGAGAAACGAA
CCCACTTACTTACTTATCGCCTCAGTTTGTATTGCGGACGTGTTAGTAGC
ATCCATCGTTCAGCCATTATTTATATGTACCATGTTGCTAGGCACCAGGC
ATTATTGTTCCCTTGACAACGTGTACTATACGTCTGCCTGGATATCCGCA
ATGGCTTCTGGGGTAGGAGTGCTACCTATCACTTTGGAACGTTATATGTA
TATTGTGTACCCcttaaaatatactttttacGTCACAAAAAAGCGTGCAC
AGGTTGCCATTACACTGTTATGGGTTATGTCTTTAGCTTTTGGCGTGTTG
CCTTTATTTTGGTATGATAGCTTACTCAACCATTCCATCAGTTTATTCAT
TGTGCtgcttatttcatttttaatggTATGCTCGTACAGTAAGATATACT
CGAAAGTTCAAAACGTCGTGCCGGTGCATCAAGATTCGCAGACCACCGGG
AATAAAAACGTCGGACGTCGCCGTAAAAACCGGTTACAAGGACAAGCGAC
ACGGACAGTATTCTTTGTCGTATTGTCGTTCTTTTTATGCTGGTTTCCTT
ATTTGATGATAAGCTTCATAATTTCGCTGTATAATTACGATAACACAGAC
TCACTTACAAATTTCACGCGTGACTCAATCATGATGAAACTATACTGGGG
TTGTTTACTTGTCGGATATTGTAATAGCGCCATCAATGTTTTCATTTACG
GTCGTAAGAATAGTGTTTTACGCCGTGAAATATCGAATTATTTTCGTAAG
ATTGTGCGTAGAAATCAGGGTGATCTTATTACGACCGCTATAGCGGGAAC
ACTACGTTTGTACAGTCGAAAAGAAAgcaaaaggaaaaaagaaatgaact
CGGAAGAAAGAAATTCTTCCATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002209-exon-sc0000018-1491911889:517730..519045 | TCONS_00002209-exon-sc0000018-1491911889:517730..519045 | Clytia hemisphaerica | exon |
| TCONS_00002209-exon-sc0000018-1510915933:517730..519045 | TCONS_00002209-exon-sc0000018-1510915933:517730..519045 | Clytia hemisphaerica | exon |
| TCONS_00002209-exon-sc0000018-1575043694:517730..519045 | TCONS_00002209-exon-sc0000018-1575043694:517730..519045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:517730..519045 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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