TCONS_00002209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002209
Unique NameTCONS_00002209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002209 ID=TCONS_00002209|Name=TCONS_00002209|organism=Clytia hemisphaerica|type=transcript|length=1316bp
ATCGatataaaattcataaaaaagtaaCTAATAAATAAAATGATATTTAA
TATATAAGTAATACTGTAGATTTCTTCCTTCTTTACTATATGGAAGAATT
TCTTTCTTCCGagttcatttcttttttccttttgcTTTCTTTTCGACTGT
ACAAACGTAGTGTTCCCGCTATAGCGGTCGTAATAAGATCACCCTGATTT
CTACGCACAATCTTACGAAAATAATTCGATATTTCACGGCGTAAAACACT
ATTCTTACGACCGTAAATGAAAACATTGATGGCGCTATTACAATATCCGA
CAAGTAAACAACCCCAGTATAGTTTCATCATGATTGAGTCACGCGTGAAA
TTTGTAAGTGAGTCTGTGTTATCGTAATTATACAGCGAAATTATGAAGCT
TATCATCAAATAAGGAAACCAGCATAAAAAGAACGACAATACGACAAAGA
ATACTGTCCGTGTCGCTTGTCCTTGTAACCGGTTTTTACGGCGACGTCCG
ACGTTTTTATTCCCGGTGGTCTGCGAATCTTGATGCACCGGCACGACGTT
TTGAACTTTCGAGTATATCTTACTGTACGAGCATAccattaaaaatgaaa
taagcaGCACAATGAATAAACTGATGGAATGGTTGAGTAAGCTATCATAC
CAAAATAAAGGCAACACGCCAAAAGCTAAAGACATAACCCATAACAGTGT
AATGGCAACCTGTGCACGCTTTTTTGTGACgtaaaaagtatattttaagG
GGTACACAATATACATATAACGTTCCAAAGTGATAGGTAGCACTCCTACC
CCAGAAGCCATTGCGGATATCCAGGCAGACGTATAGTACACGTTGTCAAG
GGAACAATAATGCCTGGTGCCTAGCAACATGGTACATATAAATAATGGCT
GAACGATGGATGCTACTAACACGTCCGCAATACAAACTGAGGCGATAAGT
AAGTAAGTGGGTTCGTTTCTCAGGTCGTGTTTATGAAGTATAATGTGGGC
GGTTAATATGTTTCCAGGAAGGGCGATACATATAGCAAGGACGGTGATGG
CTACAAAGAAGGGCGCTGTTGATGTATTATCAGAATCCACCCATAAGAAT
CTACACTCCATCCCTCATCTGTTGATGGATCTGTGAGGAAAATGCCGGAT
GACTGATTTGGTATATCTATTATTGCTTATCtgaaaagaaagagaaatta
aaactttttcatGAACAGAAAgagaaattaaaactttttcattcaataga
TCATTCGATTGATCGAATCTGCATTGAAGAATCTCAATGTGAAAGTCTTG
AAACGGTGTTCACAAT
Run BLAST on NCBI

protein sequence of TCONS_00002209-protein

>TCONS_00002209-protein ID=TCONS_00002209-protein|Name=TCONS_00002209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MECRFLWVDSDNTSTAPFFVAITVLAICIALPGNILTAHIILHKHDLRNE
PTYLLIASVCIADVLVASIVQPLFICTMLLGTRHYCSLDNVYYTSAWISA
MASGVGVLPITLERYMYIVYPLKYTFYVTKKRAQVAITLLWVMSLAFGVL
PLFWYDSLLNHSISLFIVLLISFLMVCSYSKIYSKVQNVVPVHQDSQTTG
NKNVGRRRKNRLQGQATRTVFFVVLSFFLCWFPYLMISFIISLYNYDNTD
SLTNFTRDSIMMKLYWGCLLVGYCNSAINVFIYGRKNSVLRREISNYFRK
IVRRNQGDLITTAIAGTLRLYSRKESKRKKEMNSEERNSSI
Run BLAST on NCBI

transcript from alignment at sc0000018:517730..519045

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002209 ID=TCONS_00002209|Name=TCONS_00002209|organism=Clytia hemisphaerica|type=transcript|length=1316bp|location=Sequence derived from alignment at sc0000018:517730..519045 (Clytia hemisphaerica)
ATTGTGAACACCGTTTCAAGACTTTCACATTGAGATTCTTCAATGCAGAT TCGATCAATCGAATGAtctattgaatgaaaaagttttaatttctcTTTCT GTTCatgaaaaagttttaatttctctttcttttcaGATAAGCAATAATAG ATATACCAAATCAGTCATCCGGCATTTTCCTCACAGATCCATCAACAGAT GAGGGATGGAGTGTAGATTCTTATGGGTGGATTCTGATAATACATCAACA GCGCCCTTCTTTGTAGCCATCACCGTCCTTGCTATATGTATCGCCCTTCC TGGAAACATATTAACCGCCCACATTATACTTCATAAACACGACCTGAGAA ACGAACCCACTTACTTACTTATCGCCTCAGTTTGTATTGCGGACGTGTTA GTAGCATCCATCGTTCAGCCATTATTTATATGTACCATGTTGCTAGGCAC CAGGCATTATTGTTCCCTTGACAACGTGTACTATACGTCTGCCTGGATAT CCGCAATGGCTTCTGGGGTAGGAGTGCTACCTATCACTTTGGAACGTTAT ATGTATATTGTGTACCCcttaaaatatactttttacGTCACAAAAAAGCG TGCACAGGTTGCCATTACACTGTTATGGGTTATGTCTTTAGCTTTTGGCG TGTTGCCTTTATTTTGGTATGATAGCTTACTCAACCATTCCATCAGTTTA TTCATTGTGCtgcttatttcatttttaatggTATGCTCGTACAGTAAGAT ATACTCGAAAGTTCAAAACGTCGTGCCGGTGCATCAAGATTCGCAGACCA CCGGGAATAAAAACGTCGGACGTCGCCGTAAAAACCGGTTACAAGGACAA GCGACACGGACAGTATTCTTTGTCGTATTGTCGTTCTTTTTATGCTGGTT TCCTTATTTGATGATAAGCTTCATAATTTCGCTGTATAATTACGATAACA CAGACTCACTTACAAATTTCACGCGTGACTCAATCATGATGAAACTATAC TGGGGTTGTTTACTTGTCGGATATTGTAATAGCGCCATCAATGTTTTCAT TTACGGTCGTAAGAATAGTGTTTTACGCCGTGAAATATCGAATTATTTTC GTAAGATTGTGCGTAGAAATCAGGGTGATCTTATTACGACCGCTATAGCG GGAACACTACGTTTGTACAGTCGAAAAGAAAgcaaaaggaaaaaagaaat gaactCGGAAGAAAGAAATTCTTCCATATAGTAAAGAAGGAAGAAATCTA CAGTATTACTTATATATTAAATATCATTTTATTTATTAGttactttttta tgaattttatatCGAT

Coding sequence (CDS) from alignment at sc0000018:517730..519045

>TCONS_00002209 ID=TCONS_00002209|Name=TCONS_00002209|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000018:517730..519045 (Clytia hemisphaerica)
ATGGAGTGTAGATTCTTATGGGTGGATTCTGATAATACATCAACAGCGCC
CTTCTTTGTAGCCATCACCGTCCTTGCTATATGTATCGCCCTTCCTGGAA
ACATATTAACCGCCCACATTATACTTCATAAACACGACCTGAGAAACGAA
CCCACTTACTTACTTATCGCCTCAGTTTGTATTGCGGACGTGTTAGTAGC
ATCCATCGTTCAGCCATTATTTATATGTACCATGTTGCTAGGCACCAGGC
ATTATTGTTCCCTTGACAACGTGTACTATACGTCTGCCTGGATATCCGCA
ATGGCTTCTGGGGTAGGAGTGCTACCTATCACTTTGGAACGTTATATGTA
TATTGTGTACCCcttaaaatatactttttacGTCACAAAAAAGCGTGCAC
AGGTTGCCATTACACTGTTATGGGTTATGTCTTTAGCTTTTGGCGTGTTG
CCTTTATTTTGGTATGATAGCTTACTCAACCATTCCATCAGTTTATTCAT
TGTGCtgcttatttcatttttaatggTATGCTCGTACAGTAAGATATACT
CGAAAGTTCAAAACGTCGTGCCGGTGCATCAAGATTCGCAGACCACCGGG
AATAAAAACGTCGGACGTCGCCGTAAAAACCGGTTACAAGGACAAGCGAC
ACGGACAGTATTCTTTGTCGTATTGTCGTTCTTTTTATGCTGGTTTCCTT
ATTTGATGATAAGCTTCATAATTTCGCTGTATAATTACGATAACACAGAC
TCACTTACAAATTTCACGCGTGACTCAATCATGATGAAACTATACTGGGG
TTGTTTACTTGTCGGATATTGTAATAGCGCCATCAATGTTTTCATTTACG
GTCGTAAGAATAGTGTTTTACGCCGTGAAATATCGAATTATTTTCGTAAG
ATTGTGCGTAGAAATCAGGGTGATCTTATTACGACCGCTATAGCGGGAAC
ACTACGTTTGTACAGTCGAAAAGAAAgcaaaaggaaaaaagaaatgaact
CGGAAGAAAGAAATTCTTCCATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001159XLOC_001159Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002209-proteinTCONS_00002209-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002209-exon-sc0000018-1491911889:517730..519045TCONS_00002209-exon-sc0000018-1491911889:517730..519045Clytia hemisphaericaexon
TCONS_00002209-exon-sc0000018-1510915933:517730..519045TCONS_00002209-exon-sc0000018-1510915933:517730..519045Clytia hemisphaericaexon
TCONS_00002209-exon-sc0000018-1575043694:517730..519045TCONS_00002209-exon-sc0000018-1575043694:517730..519045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:517730..519045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.40364 2.21892 0.544305 0.390513 17.8496 13.6951 8.81754 9.45068 2.37659 9.96874 2.69497 1.40871 3.51689 1.61588 0.363964 1.09365 1.17888 1.15899 1.05612 1.7825 1.64228 1.22424 2.86621 3.0401 1.82368 2.70242 6.9433 4.54922 1.35171 1.15973
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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