TCONS_00002207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002207
Unique NameTCONS_00002207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002207 ID=TCONS_00002207|Name=TCONS_00002207|organism=Clytia hemisphaerica|type=transcript|length=163bp
AAGGTATATTTAATATAAGGTAATAACTCCTACTGACAAAACAGCAATAT
AATTtacataaaaaaatctttcaccTTCTTACAAAACCTTCCAAATAAAT
ACTTCATAAAAACTTCATAATAAATATCAAATGTGtcaaatatatacaaa
atatcTCATGTTT
Run BLAST on NCBI

transcript from alignment at sc0000018:449335..449497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002207 ID=TCONS_00002207|Name=TCONS_00002207|organism=Clytia hemisphaerica|type=transcript|length=163bp|location=Sequence derived from alignment at sc0000018:449335..449497 (Clytia hemisphaerica)
AAACATGAgatattttgtatatatttgaCACATTTGATATTTATTATGAA
GTTTTTATGAAGTATTTATTTGGAAGGTTTTGTAAGAAggtgaaagattt
ttttatgtaAATTATATTGCTGTTTTGTCAGTAGGAGTTATTACCTTATA
TTAAATATACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001157XLOC_001157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002207-exon-sc0000018-1491911889:449335..449497TCONS_00002207-exon-sc0000018-1491911889:449335..449497Clytia hemisphaericaexon
TCONS_00002207-exon-sc0000018-1510915933:449335..449497TCONS_00002207-exon-sc0000018-1510915933:449335..449497Clytia hemisphaericaexon
TCONS_00002207-exon-sc0000018-1575043694:449335..449497TCONS_00002207-exon-sc0000018-1575043694:449335..449497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:449335..449497 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top