TCONS_00002205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002205
Unique NameTCONS_00002205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002205 ID=TCONS_00002205|Name=TCONS_00002205|organism=Clytia hemisphaerica|type=transcript|length=178bp
AGATAGTAACTTGCAAGTATTCTTTACTAATATTTTGGAGCtacaaattt
tacaaacaaTATTTTGATCATTCATCTCCATCACCACTCCGGCCGCCATT
TTTGCTAACACAGTCAAATTACGTCATCAATATAGAGTGTGAAATTAGGA
AGCCTAGGCCGAGTTTTGCAAACATTCT
Run BLAST on NCBI

transcript from alignment at sc0000018:383775..383952

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002205 ID=TCONS_00002205|Name=TCONS_00002205|organism=Clytia hemisphaerica|type=transcript|length=178bp|location=Sequence derived from alignment at sc0000018:383775..383952 (Clytia hemisphaerica)
AGAATGTTTGCAAAACTCGGCCTAGGCTTCCTAATTTCACACTCTATATT GATGACGTAATTTGACTGTGTTAGCAAAAATGGCGGCCGGAGTGGTGATG GAGATGAATGATCAAAATAttgtttgtaaaatttgtaGCTCCAAAATATT AGTAAAGAATACTTGCAAGTTACTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001155XLOC_001155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002205-exon-sc0000018-1491911889:383775..383952TCONS_00002205-exon-sc0000018-1491911889:383775..383952Clytia hemisphaericaexon
TCONS_00002205-exon-sc0000018-1510915933:383775..383952TCONS_00002205-exon-sc0000018-1510915933:383775..383952Clytia hemisphaericaexon
TCONS_00002205-exon-sc0000018-1575043694:383775..383952TCONS_00002205-exon-sc0000018-1575043694:383775..383952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:383775..383952 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 8.99144 2.36838 8.57206 29.4252 3.74569 4.63964 20.2651 8.88097 4.43431 1.53503 7.572 12.1889 1.66841 6.84027 11.8128 9.88896 0 0 0 0 35.7928 36.2034 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top