TCONS_00002204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002204
Unique NameTCONS_00002204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002204 ID=TCONS_00002204|Name=TCONS_00002204|organism=Clytia hemisphaerica|type=transcript|length=615bp
TATCGTTCCAGTTCTTGATCCTCTTCTAAGaaaaaaccaaaatggttttc
gGAAGGGAAGAAGTACTCTTACACAGATTTTAGCCATCAGGCGTATTTTG
GAAGAAATGCGAAAACTTAACAAAGATGCTTTTATTTGCtttgttgactt
taaaaaagccttcgaTTCCATATCTCGtgtaaaaatgtttgaaattcttA
AATTGTACGGCATTCCAGAGAAATTCATTTCAGCCATCAGGGCACTCTAC
GTGTCCACCAAAGCAAAGGTCATTACAGCTGACGGAGACACTGATATTTT
TGACATTCATGCTGGAGTTCTACAGGGTGACACCTTAGCtccctttcttt
ttatcattgttttagattatgttttaagaatttctgtTGACTTATCTAAT
GACAagggaatcaaaattaaagttcccCTGCGCAAGCGTAACCGCGGCCT
TTTTCTGACCGATCTTGACTTTGCTGACGATCTTGCCTTAGTCTCTGAGA
gtattcaaaatcttgaaagtcTTCTTTACTCACTTGAAACTTCGGCCAGT
CAAGTCGGTCTTTATTGCAATGCTggaaaaactgaatttatcAGCTCCTC
TGGGATTGTTCTCCC
Run BLAST on NCBI

protein sequence of TCONS_00002204-protein

>TCONS_00002204-protein ID=TCONS_00002204-protein|Name=TCONS_00002204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
IVPVLDPLLRKNQNGFRKGRSTLTQILAIRRILEEMRKLNKDAFICFVDF
KKAFDSISRVKMFEILKLYGIPEKFISAIRALYVSTKAKVITADGDTDIF
DIHAGVLQGDTLAPFLFIIVLDYVLRISVDLSNDKGIKIKVPLRKRNRGL
FLTDLDFADDLALVSESIQNLESLLYSLETSASQVGLYCNAGKTEFISSS
GIVL
Run BLAST on NCBI

transcript from alignment at sc0000018:305157..305771

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002204 ID=TCONS_00002204|Name=TCONS_00002204|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0000018:305157..305771 (Clytia hemisphaerica)
GGGAGAACAATCCCAGAGGAGCTgataaattcagtttttccAGCATTGCA
ATAAAGACCGACTTGACTGGCCGAAGTTTCAAGTGAGTAAAGAAgacttt
caagattttgaatacTCTCAGAGACTAAGGCAAGATCGTCAGCAAAGTCA
AGATCGGTCAGAAAAAGGCCGCGGTTACGCTTGCGCAGgggaactttaat
tttgattccctTGTCATTAGATAAGTCAacagaaattcttaaaacataat
ctaaaacaatgataaaaagaaagggaGCTAAGGTGTCACCCTGTAGAACT
CCAGCATGAATGTCAAAAATATCAGTGTCTCCGTCAGCTGTAATGACCTT
TGCTTTGGTGGACACGTAGAGTGCCCTGATGGCTGAAATGAATTTCTCTG
GAATGCCGTACAATTTaagaatttcaaacatttttacaCGAGATATGGAA
tcgaaggcttttttaaagtcaacaaaGCAAATAAAAGCATCTTTGTTAAG
TTTTCGCATTTCTTCCAAAATACGCCTGATGGCTAAAATCTGTGTAAGAG
TACTTCTTCCCTTCcgaaaaccattttggttttttCTTAGAAGAGGATCA
AGAACTGGAACGATA

Coding sequence (CDS) from alignment at sc0000018:305157..305771

>TCONS_00002204 ID=TCONS_00002204|Name=TCONS_00002204|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000018:305157..305771 (Clytia hemisphaerica)
GAGAACAATCCCAGAGGAGCTgataaattcagtttttccAGCATTGCAAT
AAAGACCGACTTGACTGGCCGAAGTTTCAAGTGAGTAAAGAAgactttca
agattttgaatacTCTCAGAGACTAAGGCAAGATCGTCAGCAAAGTCAAG
ATCGGTCAGAAAAAGGCCGCGGTTACGCTTGCGCAGgggaactttaattt
tgattccctTGTCATTAGATAAGTCAacagaaattcttaaaacataatct
aaaacaatgataaaaagaaagggaGCTAAGGTGTCACCCTGTAGAACTCC
AGCATGAATGTCAAAAATATCAGTGTCTCCGTCAGCTGTAATGACCTTTG
CTTTGGTGGACACGTAGAGTGCCCTGATGGCTGAAATGAATTTCTCTGGA
ATGCCGTACAATTTaagaatttcaaacatttttacaCGAGATATGGAAtc
gaaggcttttttaaagtcaacaaaGCAAATAAAAGCATCTTTGTTAAGTT
TTCGCATTTCTTCCAAAATACGCCTGATGGCTAAAATCTGTGTAAGAGTA
CTTCTTCCCTTCcgaaaaccattttggttttttCTTAGAAGAGGATCAAG
AACTGGAACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001154XLOC_001154Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002204-proteinTCONS_00002204-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002204-exon-sc0000018-1491911889:305157..305771TCONS_00002204-exon-sc0000018-1491911889:305157..305771Clytia hemisphaericaexon
TCONS_00002204-exon-sc0000018-1510915933:305157..305771TCONS_00002204-exon-sc0000018-1510915933:305157..305771Clytia hemisphaericaexon
TCONS_00002204-exon-sc0000018-1575043694:305157..305771TCONS_00002204-exon-sc0000018-1575043694:305157..305771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:305157..305771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73197	1.55815	2.97107	3.18564	1.82256	1.7568	1.98969	3.9797	1.62576	2.38813	2.07565	2.60553	2.21009	3.05032	2.0938	3.39721	3.97305	2.34934	2.31493	2.45809	4.60833	4.41879	0.589854	2.63808	1.47058	2.42778	4.24891	4.23578	2.85059	2.32032
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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