TCONS_00002203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002203
Unique NameTCONS_00002203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002203 ID=TCONS_00002203|Name=TCONS_00002203|organism=Clytia hemisphaerica|type=transcript|length=281bp
CGAATCTCGTTCATACAATCATCAGTGAAAAAATTTGTCTTAGACATGAC
CCAACTGTACGTCATATCGTAAACATCAAAgtcttgattttttatgacat
cGAATAGTGTCTTAATGACTGGGTGCTGCATTGAAACaccattaaaaata
ttttcctctGTTTCAATATGTCGATTTAATGGAAGCCAATCTATTGGTTG
ATAATCAGAATATGTCCTAAAAATAATAACTGCCCATTGTCTCTCTTCCT
GCAGTAACTCCAGATATACCAGCATTTCATC
Run BLAST on NCBI

transcript from alignment at sc0000018:277033..277313

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002203 ID=TCONS_00002203|Name=TCONS_00002203|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at sc0000018:277033..277313 (Clytia hemisphaerica)
GATGAAATGCTGGTATATCTGGAGTTACTGCAGGAAGAGAGACAATGGGC
AGTTATTATTTTTAGGACATATTCTGATTATCAACCAATAGATTGGCTTC
CATTAAATCGACATATTGAAACagaggaaaatatttttaatggtGTTTCA
ATGCAGCACCCAGTCATTAAGACACTATTCgatgtcataaaaaatcaaga
cTTTGATGTTTACGATATGACGTACAGTTGGGTCATGTCTAAGACAAATT
TTTTCACTGATGATTGTATGAACGAGATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001153XLOC_001153Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002203-exon-sc0000018-1491911889:277033..277313TCONS_00002203-exon-sc0000018-1491911889:277033..277313Clytia hemisphaericaexon
TCONS_00002203-exon-sc0000018-1510915933:277033..277313TCONS_00002203-exon-sc0000018-1510915933:277033..277313Clytia hemisphaericaexon
TCONS_00002203-exon-sc0000018-1575043694:277033..277313TCONS_00002203-exon-sc0000018-1575043694:277033..277313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:277033..277313 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.43984	5.71015	4.97252	1.62161	0	0	0	0	0	2.03736	0	0.974952	3.45636	1.01109	1.10834	2.97354	0	0.375462	3.63105	3.08572	0.94359	0	3.35697	3.05197	0	0	2.0073	1.42817	1.62482	2.20725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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