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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002202 ID=TCONS_00002202|Name=TCONS_00002202|organism=Clytia hemisphaerica|type=transcript|length=1482bp
GAGAAGCTGAATGTGTTCGGATTATCAGGAAGTGTATCAATCAAGTTTCG
CAACGTTTCTTCAGGCTTAGGTACAGAGTTCAGTAGCCTTACTGTGGTTG
TGTTATAATGTTCATTAAGTGCGTTTGGGTCAGCGTCGATACTCTTTGGG
TTTGGATTTAAAATCCGGTAGATGGTATTCCAAACTTCTTTCGGGCGTCT
CGATGATAGtgcttttttataaaagtttgaTTTGGTATTGCGtatgtttt
tctttactttgttTCGAACTTTACGGAATGCACCCCAATCTTGTTCGTTA
TGGGGTCGTTGATGTGCTCGAGATCGTAGTTGGTCACGCTCGCGGAGCTT
AGCAGATAGATTAAGTTCTTACAGCCATGGGGCCGGTGGTCTCGTTATTT
TGCATTTGACAAGTGGTGCATGTTCGTTTAAACAAGATAAAAACAGTTCA
TTGAAACAGTGTANCAGGTAACTTGCCATTAGTAGCAATACAGACTTTGA
AAAGTTAAGTTTATGAAGTTTTTCAATCATTATTTTGAAATCGACTGTGT
CAAATGCTTTCGAGAAATCGGCCATCACAGAAAGAGTGAGTTCACCACTA
TCCATCGCcttgatgatatcactcttgATTTTCATACATGTTGTGATTGT
ACAGTGTCCTTTTCGAAATCCAGATTGGTGGTAGGATAGAAGTTTACGGG
ATTCGATGTGATCGACCATTTGAAGCATTAGAATTCTTTCGTATACTTTT
GAAAGGATTGGGAGAATGGATATCGGTCGGTAATCTGANATTGGTTTCGA
TTCGGATATGTTTGTATCGTGGCTCGAAACGTGGTTTCTTGACGTCGAAA
ATGACATAAGGGCCGTCGTGATCACTGATTTCGTCACATGGAAGAACGTT
CTCGTGGTTGATTTTGGGAAGATTTGAGGCGATATGATCTATTAGCGTAC
GGTCATGTCTAGTAGGTCTGGAGATATGTTGATTGAGGCCATGGTTGCGT
AAAAGTTCTCTATACTCTTGTGCAATTTCTGAGTTTTCTATCATATCAAT
GTTAGTATCACCGGTGATGACTATAGGGCCAGTCCAGATTTTTGAAACGT
AGACAAGCAGGGTATCGAGCTTGGTCAGCCACACACGCTTATCTGCTAGG
GTAGGACTTGGTTGATACAAAGCAGCTAGGAGAAAAGAGTCATGTTTACC
TTTGATCTCCATCCACATGTGTTCGATCGAAGTGTCTTTTTCGGTGATAT
CGTcccttattttgaattttatggaCTCGTGTATATACATACATGCCAAC
ACCGCCTCCACGTTTTTTATCTCGATTGCGGTCTTGGTTGAGGGCTCGCT
GATGTTCGTCTTCCTCCGGATCTTCAGGTGCAACTTCATTGATATCTGTC
AGGTCGCGGACACCGAAGAAAGGTAACACTGTAAGTAGACAGTTATGGCA
TGTCCACTGATTAAGTTTATTAGGAAAGTTTT Run BLAST on NCBI protein sequence of TCONS_00002202-protein >TCONS_00002202-protein ID=TCONS_00002202-protein|Name=TCONS_00002202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MKLHLKIRRKTNISEPSTKTAIEIKNVEAVLACMYIHESIKFKIRDDITE
KDTSIEHMWMEIKGKHDSFLLAALYQPSPTLADKRVWLTKLDTLLVYVSK
IWTGPIVITGDTNIDMIENSEIAQEYRELLRNHGLNQHISRPTRHDRTLI
DHIASNLPKINHENVLPCDEISDHDGPYVIFDVKKPRFEPRYKHIRIETN
XRLPTDIHSPNPFKSIRKNSNASNGRSHRIP Run BLAST on NCBI transcript from alignment at sc0000018:267683..269164 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002202 ID=TCONS_00002202|Name=TCONS_00002202|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at sc0000018:267683..269164 (Clytia hemisphaerica)
AAAACTTTCCTAATAAACTTAATCAGTGGACATGCCATAACTGTCTACTT
ACAGTGTTACCTTTCTTCGGTGTCCGCGACCTGACAGATATCAATGAAGT
TGCACCTGAAGATCCGGAGGAAGACGAACATCAGCGAGCCCTCAACCAAG
ACCGCAATCGAGATAAAAAACGTGGAGGCGGTGTTGGCATGTATGTATAT
ACACGAGtccataaaattcaaaataagggACGATATCACCGAAAAAGACA
CTTCGATCGAACACATGTGGATGGAGATCAAAGGTAAACATGACTCTTTT
CTCCTAGCTGCTTTGTATCAACCAAGTCCTACCCTAGCAGATAAGCGTGT
GTGGCTGACCAAGCTCGATACCCTGCTTGTCTACGTTTCAAAAATCTGGA
CTGGCCCTATAGTCATCACCGGTGATACTAACATTGATATGATAGAAAAC
TCAGAAATTGCACAAGAGTATAGAGAACTTTTACGCAACCATGGCCTCAA
TCAACATATCTCCAGACCTACTAGACATGACCGTACGCTAATAGATCATA
TCGCCTCAAATCTTCCCAAAATCAACCACGAGAACGTTCTTCCATGTGAC
GAAATCAGTGATCACGACGGCCCTTATGTCATTTTCGACGTCAAGAAACC
ACGTTTCGAGCCACGATACAAACATATCCGAATCGAAACCAATNTCAGAT
TACCGACCGATATCCATTCTCCCAATCCTTTCAAAAGTATACGAAAGAAT
TCTAATGCTTCAAATGGTCGATCACATCGAATCCCGTAAACTTCTATCCT
ACCACCAATCTGGATTTCGAAAAGGACACTGTACAATCACAACATGTATG
AAAATcaagagtgatatcatcaagGCGATGGATAGTGGTGAACTCACTCT
TTCTGTGATGGCCGATTTCTCGAAAGCATTTGACACAGTCGATTTCAAAA
TAATGATTGAAAAACTTCATAAACTTAACTTTTCAAAGTCTGTATTGCTA
CTAATGGCAAGTTACCTGNTACACTGTTTCAATGAACTGTTTTTATCTTG
TTTAAACGAACATGCACCACTTGTCAAATGCAAAATAACGAGACCACCGG
CCCCATGGCTGTAAGAACTTAATCTATCTGCTAAGCTCCGCGAGCGTGAC
CAACTACGATCTCGAGCACATCAACGACCCCATAACGAACAAGATTGGGG
TGCATTCCGTAAAGTTCGAaacaaagtaaagaaaaacataCGCAATACCA
AAtcaaacttttataaaaaagcaCTATCATCGAGACGCCCGAAAGAAGTT
TGGAATACCATCTACCGGATTTTAAATCCAAACCCAAAGAGTATCGACGC
TGACCCAAACGCACTTAATGAACATTATAACACAACCACAGTAAGGCTAC
TGAACTCTGTACCTAAGCCTGAAGAAACGTTGCGAAACTTGATTGATACA
CTTCCTGATAATCCGAACACATTCAGCTTCTC Coding sequence (CDS) from alignment at sc0000018:267683..269164 >TCONS_00002202 ID=TCONS_00002202|Name=TCONS_00002202|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000018:267683..269164 (Clytia hemisphaerica)
ATGAAGTTGCACCTGAAGATCCGGAGGAAGACGAACATCAGCGAGCCCTC
AACCAAGACCGCAATCGAGATAAAAAACGTGGAGGCGGTGTTGGCATGTA
TGTATATACACGAGtccataaaattcaaaataagggACGATATCACCGAA
AAAGACACTTCGATCGAACACATGTGGATGGAGATCAAAGGTAAACATGA
CTCTTTTCTCCTAGCTGCTTTGTATCAACCAAGTCCTACCCTAGCAGATA
AGCGTGTGTGGCTGACCAAGCTCGATACCCTGCTTGTCTACGTTTCAAAA
ATCTGGACTGGCCCTATAGTCATCACCGGTGATACTAACATTGATATGAT
AGAAAACTCAGAAATTGCACAAGAGTATAGAGAACTTTTACGCAACCATG
GCCTCAATCAACATATCTCCAGACCTACTAGACATGACCGTACGCTAATA
GATCATATCGCCTCAAATCTTCCCAAAATCAACCACGAGAACGTTCTTCC
ATGTGACGAAATCAGTGATCACGACGGCCCTTATGTCATTTTCGACGTCA
AGAAACCACGTTTCGAGCCACGATACAAACATATCCGAATCGAAACCAAT
NTCAGATTACCGACCGATATCCATTCTCCCAATCCTTTCAAAAGTATACG
AAAGAATTCTAATGCTTCAAATGGTCGATCACATCGAATCCCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002202-exon-sc0000018-1491911889:267683..269164 | TCONS_00002202-exon-sc0000018-1491911889:267683..269164 | Clytia hemisphaerica | exon |
| TCONS_00002202-exon-sc0000018-1510915933:267683..269164 | TCONS_00002202-exon-sc0000018-1510915933:267683..269164 | Clytia hemisphaerica | exon |
| TCONS_00002202-exon-sc0000018-1575043694:267683..269164 | TCONS_00002202-exon-sc0000018-1575043694:267683..269164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:267683..269164 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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