TCONS_00002201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002201
Unique NameTCONS_00002201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002201 ID=TCONS_00002201|Name=TCONS_00002201|organism=Clytia hemisphaerica|type=transcript|length=261bp
GTCATACCATTCACATTTTATTACGCCGTAGAACCCACCGGCGTACAGCA
TCCGTACAGGACAAAGGTAGAGTACGTTATTGCGTGGAAGCTCCGACAAA
CACCTTCTCATGTACTCGTGTTTCCATTTTAAAACCAGTTACATACACAT
ACAGAACAAACTTTGAATTCACATTTTGCGTGAAGTTAACCATTACATAG
ACCCAAAGATTATAATAGCTTTAATGTCCAAGTTGGCAACGCTTATCCAA
CGCCCTATGAT
Run BLAST on NCBI

transcript from alignment at sc0000018:155820..156080

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002201 ID=TCONS_00002201|Name=TCONS_00002201|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at sc0000018:155820..156080 (Clytia hemisphaerica)
ATCATAGGGCGTTGGATAAGCGTTGCCAACTTGGACATTAAAGCTATTAT
AATCTTTGGGTCTATGTAATGGTTAACTTCACGCAAAATGTGAATTCAAA
GTTTGTTCTGTATGTGTATGTAACTGGTTTTAAAATGGAAACACGAGTAC
ATGAGAAGGTGTTTGTCGGAGCTTCCACGCAATAACGTACTCTACCTTTG
TCCTGTACGGATGCTGTACGCCGGTGGGTTCTACGGCGTAATAAAATGTG
AATGGTATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001151XLOC_001151Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002201-exon-sc0000018-1491911889:155820..156080TCONS_00002201-exon-sc0000018-1491911889:155820..156080Clytia hemisphaericaexon
TCONS_00002201-exon-sc0000018-1510915933:155820..156080TCONS_00002201-exon-sc0000018-1510915933:155820..156080Clytia hemisphaericaexon
TCONS_00002201-exon-sc0000018-1575043694:155820..156080TCONS_00002201-exon-sc0000018-1575043694:155820..156080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:155820..156080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.646634	0	0	1.43259	1.74404	0	0	0.7783	13.0777	7.42449	15.723	19.8101	1.72022	0	0.73436	1.57616	0	0.995091	0.687386	2.1579	0	0	0.741418	0.674056	1.38852	0	1.77333	1.89254	2.87085	5.11865
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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