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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002198 ID=TCONS_00002198|Name=TCONS_00002198|organism=Clytia hemisphaerica|type=transcript|length=1826bp
GATtgattttgaaacaatttatcACGTTCATATATTAAAGAATCAGTGCC
AGAACGAATATCAAAGTATCCCGTgtgggggggggcagtcaggtaAATTG
ACCGACAGGTATGTGCAGCGGTTAAGGCggttatgtttttcaaaatatca
gaaatcctgtaagggtggacttttgctAAATgaattttgctcgaaaatct
tgttttttttgctctaaaagagtttaaaatttgagaaaatgtactgtaag
ggtatcaatttcaccgatttttttctgcacataccgtcagttggtaaact
cattgccccccccccccccgggcaaagTGTGTATCTACAAAAAGTGAGAT
CAACATTAATATATCAATTAAATAACATCAAAGTAAATTGGCGACTTTAG
CTAATTTAGTTCTCACTAAAGTTAAAAATTGCGTCACTCGCTAAATtatg
ttttcattaaaataattttttttgatttttgccgCTAATAACAAATACAC
AGCATAATTTCATAAAGCcacttttaaattgattttgatgatttcCAAAA
CCCTTCCAACTTCATTTCAACAATTAAATCTTCAGTCTTTAGATTAGTCA
ATTCAAATCTCCGTTCTCAGATCTAAGAAAATCATTAAGTTCCTCTTATT
AACATCTTGGTTGCTTTCAAACTTTCTAATGCCCCTGACCAACTTTCCCA
GTGCACTCCTTTCCATTTGATAACATCTGGCTGGCTTGAATAGTGATTGT
TAAAGTCAATTAAAAAGCATGCTCTATACCACCACGCAGATTTAGCACCC
TCAGCACAATTGCATTCAGCACAAGCGTCATTATCTTCAAGACGGGTCGA
AAATGCCATTCCATCATGATGAAGCCAGTCTTGTTCATGAGCACCTGTTA
TAAGATTGCCAGTATTCAATTTGTAATTTGTATCTTCACCTCCTAgtgaa
aaattaccaaaaagcGCAGTGTTTACACTCCCGTCGAATCTTTCCCCATA
AAGCAAAATCTCGGTTGTATAAGCCGAAGTGAATTGATGAACAAACTCAA
GACCTAACCAATGTTCAACAGCATTTCCAAAACCACATTTGTATTGCTGC
CATTCTTGATAAAAATCAACTGAGCCATCAAAACGCTTTTGCATGACAAT
CCAGCCACCACCATANGATAAAAATCAACTGAACCATCAAAACGCTTTTG
CATGACAATCCAGCCACCACCATAAGTTGTCATATCACAAAATACTTGTT
TGATTGGAAACCTTTCGATGCCGATCCAATAAAGACCATCTTTGTTATAT
CCAAGTTGCAGCCAATCTCGACATTCACTTTTAACTTGAAGATCAATTTG
AAACACGTCTGATCCAATCAAAGGCTTCAATCTTGACGCAATATCGCTGA
TATAGTGGAATAACAAACAGACCAATCGAGTTCCATTGATGGCAATTTGT
GTGATGTAACAGCCTTGTTGTTGGCATGACAACGTACATTCGATATGGCT
TCCAACATCATTTTGAGCAAAAGGTTGTATGCCTTCAATGGTAACGTTTT
CTTCGACTTTTATGAAATGACCATTCTCTCTTTGTTTTGTATCACATCCA
AAAAGGTTTTCAGCTTCACATGTCTTCAAAAAGATTGGTAAGAGTGCCAA
TAGGAAACATTTCCTAAACACCTTCATAGTGCTGAGCATGATATTAAAAT
GGTGAAGTTGTTTTTATAACCTTCGAAACAGACTAAAAACGATAAATACT
TAATTCGATTCATGATTATAAGTGGGTATTGTCCCCCCTGTGCTGTGGAG
TAATCTCTACCATACATGGTGAAAAT Run BLAST on NCBI protein sequence of TCONS_00002198-protein >TCONS_00002198-protein ID=TCONS_00002198-protein|Name=TCONS_00002198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MLSTMKVFRKCFLLALLPIFLKTCEAENLFGCDTKQRENGHFIKVEENVT
IEGIQPFAQNDVGSHIECTLSCQQQGCYITQIAINGTRLVCLLFHYISDI
ASRLKPLIGSDVFQIDLQVKSECRDWLQLGYNKDGLYWIGIERFPIKQVF
CDMTTYGGGWIVMQKRFDGSVDFYXMVVAGLSCKSVLMAQLIFIKNGSNT
NVVLEMLLNIG Run BLAST on NCBI transcript from alignment at sc0000018:118613..120438 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002198 ID=TCONS_00002198|Name=TCONS_00002198|organism=Clytia hemisphaerica|type=transcript|length=1826bp|location=Sequence derived from alignment at sc0000018:118613..120438 (Clytia hemisphaerica)
ATTTTCACCATGTATGGTAGAGATTACTCCACAGCACAGGGGGGACAATA
CCCACTTATAATCATGAATCGAATTAAGTATTTATCGTTTTTAGTCTGTT
TCGAAGGTTATAAAAACAACTTCACCATTTTAATATCATGCTCAGCACTA
TGAAGGTGTTTAGGAAATGTTTCCTATTGGCACTCTTACCAATCTTTTTG
AAGACATGTGAAGCTGAAAACCTTTTTGGATGTGATACAAAACAAAGAGA
GAATGGTCATTTCATAAAAGTCGAAGAAAACGTTACCATTGAAGGCATAC
AACCTTTTGCTCAAAATGATGTTGGAAGCCATATCGAATGTACGTTGTCA
TGCCAACAACAAGGCTGTTACATCACACAAATTGCCATCAATGGAACTCG
ATTGGTCTGTTTGTTATTCCACTATATCAGCGATATTGCGTCAAGATTGA
AGCCTTTGATTGGATCAGACGTGTTTCAAATTGATCTTCAAGTTAAAAGT
GAATGTCGAGATTGGCTGCAACTTGGATATAACAAAGATGGTCTTTATTG
GATCGGCATCGAAAGGTTTCCAATCAAACAAGTATTTTGTGATATGACAA
CTTATGGTGGTGGCTGGATTGTCATGCAAAAGCGTTTTGATGGTTCAGTT
GATTTTTATCNTATGGTGGTGGCTGGATTGTCATGCAAAAGCGTTTTGAT
GGCTCAGTTGATTTTTATCAAGAATGGCAGCAATACAAATGTGGTTTTGG
AAATGCTGTTGAACATTGGTTAGGTCTTGAGTTTGTTCATCAATTCACTT
CGGCTTATACAACCGAGATTTTGCTTTATGGGGAAAGATTCGACGGGAGT
GTAAACACTGCgctttttggtaatttttcacTAGGAGGTGAAGATACAAA
TTACAAATTGAATACTGGCAATCTTATAACAGGTGCTCATGAACAAGACT
GGCTTCATCATGATGGAATGGCATTTTCGACCCGTCTTGAAGATAATGAC
GCTTGTGCTGAATGCAATTGTGCTGAGGGTGCTAAATCTGCGTGGTGGTA
TAGAGCATGCTTTTTAATTGACTTTAACAATCACTATTCAAGCCAGCCAG
ATGTTATCAAATGGAAAGGAGTGCACTGGGAAAGTTGGTCAGGGGCATTA
GAAAGTTTGAAAGCAACCAAGATGTTAATAAGAGGAACTTAATGATTTTC
TTAGATCTGAGAACGGAGATTTGAATTGACTAATCTAAAGACTGAAGATT
TAATTGTTGAAATGAAGTTGGAAGGGTTTTGgaaatcatcaaaatcaatt
taaaagtgGCTTTATGAAATTATGCTGTGTATTTGTTATTAGcggcaaaa
atcaaaaaaaattattttaatgaaaacataATTTAGCGAGTGACGCAATT
TTTAACTTTAGTGAGAACTAAATTAGCTAAAGTCGCCAATTTACTTTGAT
GTTATTTAATTGATATATTAATGTTGATCTCACTTTTTGTAGATACACAc
tttgcccggggggggggggggcaatgagtttaccaactgacggtatgtgc
agaaaaaaatcggtgaaattgatacccttacagtacattttctcaaattt
taaactcttttagagcaaaaaaaacaagattttcgagcaaaattcATTTa
gcaaaagtccacccttacaggatttctgatattttgaaaaacataaccGC
CTTAACCGCTGCACATACCTGTCGGTCAATTtacctgactgccccccccc
acACGGGATACTTTGATATTCGTTCTGGCACTGATTCTTTAATATATGAA
CGTgataaattgtttcaaaatcaATC Coding sequence (CDS) from alignment at sc0000018:118613..120438 >TCONS_00002198 ID=TCONS_00002198|Name=TCONS_00002198|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000018:118613..120438 (Clytia hemisphaerica)
ATGCTCAGCACTATGAAGGTGTTTAGGAAATGTTTCCTATTGGCACTCTT
ACCAATCTTTTTGAAGACATGTGAAGCTGAAAACCTTTTTGGATGTGATA
CAAAACAAAGAGAGAATGGTCATTTCATAAAAGTCGAAGAAAACGTTACC
ATTGAAGGCATACAACCTTTTGCTCAAAATGATGTTGGAAGCCATATCGA
ATGTACGTTGTCATGCCAACAACAAGGCTGTTACATCACACAAATTGCCA
TCAATGGAACTCGATTGGTCTGTTTGTTATTCCACTATATCAGCGATATT
GCGTCAAGATTGAAGCCTTTGATTGGATCAGACGTGTTTCAAATTGATCT
TCAAGTTAAAAGTGAATGTCGAGATTGGCTGCAACTTGGATATAACAAAG
ATGGTCTTTATTGGATCGGCATCGAAAGGTTTCCAATCAAACAAGTATTT
TGTGATATGACAACTTATGGTGGTGGCTGGATTGTCATGCAAAAGCGTTT
TGATGGTTCAGTTGATTTTTATCNTATGGTGGTGGCTGGATTGTCATGCA
AAAGCGTTTTGATGGCTCAGTTGATTTTTATCAAGAATGGCAGCAATACA
AATGTGGTTTTGGAAATGCTGTTGAACATTGGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002198-exon-sc0000018-1491911889:118613..120438 | TCONS_00002198-exon-sc0000018-1491911889:118613..120438 | Clytia hemisphaerica | exon |
| TCONS_00002198-exon-sc0000018-1510915933:118613..120438 | TCONS_00002198-exon-sc0000018-1510915933:118613..120438 | Clytia hemisphaerica | exon |
| TCONS_00002198-exon-sc0000018-1575043694:118613..120438 | TCONS_00002198-exon-sc0000018-1575043694:118613..120438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:118613..120438 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
BLAST of TCONS_00002198 vs. Swiss-Prot (Human)
Match: ANGP2 (Angiopoietin-2 OS=Homo sapiens GN=ANGPT2 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.033e-29 Identity = 66/175 (37.71%), Postives = 102/175 (58.29%), Query Frame = -2
Query: 644 GGGWIVMQKRFDGSVDFYQEWQQYKCGFGNAV-EHWLGLEFVHQFTSAYTTEILLYGERFDGSVNTALFGNFSLGGEDTNYKLNTGNLITGAHEQDWLHHDGMAFSTRLEDNDACAECNCAEGAKSAWWYRACFLIDFNN-HYSSQPDVIKWKGVHWESWSGALESLKATKMLIR 1162
GGGW ++Q+R DGSVDF + W++YK GFGN E+WLG EFV Q T+ + ++ + ++G+ +L+ +F L E+ NY+++ L A + + G FST+ DND C C C++ WW+ AC + N +Y + + K+ G+ W W G+ SLKAT M+IR
Sbjct: 319 GGGWTIIQRREDGSVDFQRTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKCI-CKCSQMLTGGWWFDACGPSNLNGMYYPQRQNTNKFNGIKWYYWKGSGYSLKATTMMIR 492
The following BLAST results are available for this feature:
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