TCONS_00002197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002197
Unique NameTCONS_00002197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002197 ID=TCONS_00002197|Name=TCONS_00002197|organism=Clytia hemisphaerica|type=transcript|length=587bp
ATTTTTTTTGGCCCAGCAGCGCAGCGTAGTGGGCCTTTCATCTGCACAGT
GCCCGTACGTTTGTTAGTTAGTTACGCAAAGCAATTAGGCGGTGTTCCGC
GAGAGTACATATATTTTCCAGGCTAAACTTAGCGCTATAATGTAGAGGGA
TTGACAGGGATCGTCATAGCGCTATAATGTAGAGGGATCGACAGGGATCG
TCATAGTCAATTACAAACCGTGCAACCCTTCTCATACAACAACTTCTCAA
CAACAACCAGACCAAAGACTATCTTCTTCACATGCTCACCCTACCAGAAC
AAAAACGCCACTACTCAATTATGAATGAAATTTTACAGACATTTACCAAT
CACGATATGGATGTTATTTGTTCTTGTCTTGGTTCAAAACAAACAGTCCC
TCAACAAAACAATACAAACTCACCACCAGAACTGGAAGAATGCCGGGCTT
GCATCGAAAACTGGCATATTGCAAActttagaaataatttttacaatATT
CTTCAAGCATCATGTTTTAATCAATAACTAATATCTATAATATTTATTTC
TTGGTCTGATATTCTGACATACTAAGTCTGGCCCAGC
Run BLAST on NCBI

transcript from alignment at sc0000018:116247..116833

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002197 ID=TCONS_00002197|Name=TCONS_00002197|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at sc0000018:116247..116833 (Clytia hemisphaerica)
GCTGGGCCAGACTTAGTATGTCAGAATATCAGACCAAGAAATAAATATTA
TAGATATTAGTTATTGATTAAAACATGATGCTTGAAGAATattgtaaaaa
ttatttctaaagTTTGCAATATGCCAGTTTTCGATGCAAGCCCGGCATTC
TTCCAGTTCTGGTGGTGAGTTTGTATTGTTTTGTTGAGGGACTGTTTGTT
TTGAACCAAGACAAGAACAAATAACATCCATATCGTGATTGGTAAATGTC
TGTAAAATTTCATTCATAATTGAGTAGTGGCGTTTTTGTTCTGGTAGGGT
GAGCATGTGAAGAAGATAGTCTTTGGTCTGGTTGTTGTTGAGAAGTTGTT
GTATGAGAAGGGTTGCACGGTTTGTAATTGACTATGACGATCCCTGTCGA
TCCCTCTACATTATAGCGCTATGACGATCCCTGTCAATCCCTCTACATTA
TAGCGCTAAGTTTAGCCTGGAAAATATATGTACTCTCGCGGAACACCGCC
TAATTGCTTTGCGTAACTAACTAACAAACGTACGGGCACTGTGCAGATGA
AAGGCCCACTACGCTGCGCTGCTGGGCCAAAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001147XLOC_001147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002197-exon-sc0000018-1491911889:116247..116833TCONS_00002197-exon-sc0000018-1491911889:116247..116833Clytia hemisphaericaexon
TCONS_00002197-exon-sc0000018-1510915933:116247..116833TCONS_00002197-exon-sc0000018-1510915933:116247..116833Clytia hemisphaericaexon
TCONS_00002197-exon-sc0000018-1575043694:116247..116833TCONS_00002197-exon-sc0000018-1575043694:116247..116833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:116247..116833 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.127093	0.187303	0	0	0	0	0	0.129496	0.111425	0.101426	0.0627852	0	0	0	0.123337	0.0748865	0.0756876	0	0	0	0	0.118685	0.103555	0.508774	1.25908	0	0	0.104173	0.309367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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