TCONS_00002196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002196
Unique NameTCONS_00002196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002196 ID=TCONS_00002196|Name=TCONS_00002196|organism=Clytia hemisphaerica|type=transcript|length=288bp
attttgtctgTCGGCTAGCATACAATTATCTATCCTCTAGCAAAGCCGAA
CAAAGCCATATGTTGATATATGGCTGAAGACTGTATCTTGTTATTGTCTG
TATTTCGTATAGTCTACCACCTACATAGACTATCTTCAAGTCAACGTGGA
GTGTTCAGCGTGAtctctttttctctcaaagACTGAGAAGTAAAGAGTTC
AAGAAGTAAGAAGATAAATCAAGATTTTACTGTCACTGACTGCTGCTGCC
ATTCATAAAGGTAAATCTCTATTGTGTGCTCCAGTAGT
Run BLAST on NCBI

transcript from alignment at sc0000018:115265..115552

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002196 ID=TCONS_00002196|Name=TCONS_00002196|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at sc0000018:115265..115552 (Clytia hemisphaerica)
ACTACTGGAGCACACAATAGAGATTTACCTTTATGAATGGCAGCAGCAGT
CAGTGACAGTAAAATCTTGATTTATCTTCTTACTTCTTGAACTCTTTACT
TCTCAGTctttgagagaaaaagagaTCACGCTGAACACTCCACGTTGACT
TGAAGATAGTCTATGTAGGTGGTAGACTATACGAAATACAGACAATAACA
AGATACAGTCTTCAGCCATATATCAACATATGGCTTTGTTCGGCTTTGCT
AGAGGATAGATAATTGTATGCTAGCCGAcagacaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001146XLOC_001146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002196-exon-sc0000018-1491911889:115265..115552TCONS_00002196-exon-sc0000018-1491911889:115265..115552Clytia hemisphaericaexon
TCONS_00002196-exon-sc0000018-1510915933:115265..115552TCONS_00002196-exon-sc0000018-1510915933:115265..115552Clytia hemisphaericaexon
TCONS_00002196-exon-sc0000018-1575043694:115265..115552TCONS_00002196-exon-sc0000018-1575043694:115265..115552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:115265..115552 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.84627	2.29471	2.12126	0.495011	5.42365	4.28584	1.72356	3.76502	1.35004	1.49038	3.82966	0.721595	2.83992	0	1.52638	1.86059	0	2.34883	1.28008	2.98252	1.91579	3.82916	0.512371	0.517351	1.43935	0.892967	2.89075	0	2.32817	1.91939
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top