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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002192 ID=TCONS_00002192|Name=TCONS_00002192|organism=Clytia hemisphaerica|type=transcript|length=3124bpRun BLAST on NCBI transcript from alignment at sc0000018:1073429..1089207- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002192 ID=TCONS_00002192|Name=TCONS_00002192|organism=Clytia hemisphaerica|type=transcript|length=15779bp|location=Sequence derived from alignment at sc0000018:1073429..1089207- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002192 vs. Swiss-Prot (Human)
Match: ZN431 (Zinc finger protein 431 OS=Homo sapiens GN=ZNF431 PE=2 SV=2) HSP 1 Score: 176.792 bits (447), Expect = 2.780e-46 Identity = 108/295 (36.61%), Postives = 140/295 (47.46%), Query Frame = 2
Query: 386 NNAPATLTIAPSTIIPNDQTDPVTTTVGSINETDPKQPPQPEIKYIGLQKHDCEVCCRTFSSAQALKSHRKSHQPDRTFQCETCLKCFAERSTLKRHMYIHLEEKPFKCEHCDRAFSDKSTLRRHTITHTGAKRFQCPRCDKKFTRNEHLRQHMYIHTAEKLYRCEICNKDFRQRSTRKNHMLLHRAESAYKCGACGAGFSRQSLYDKHVLWCTGNTDDELKCEECDKTFQDRGALKRHQLIHS---------------DRSVLRRHVLPHEEKKPFQCHICHKDFIRKVSLQEH 1225
N LT S I P D+ V + N + + ++ G + C+ C ++F L H++ H + ++QCE C K F STL RH IH EKPFKCE C +AF STL H I HTG K ++C C K F R+ HL H IHT EK Y+CE C K F Q ST H +H E YKC C F+R S KH + TG + KCEEC K F L +H+ IH+ + S L H + H +KP++C C K F R L H
Sbjct: 162 NELNQCLTTTQSKIFPCDKYVKVFHKFLNAN--------RHKTRHTGKKPFKCKKCGKSFCMLLHLSQHKRIHIRENSYQCEECGKAFKWFSTLTRHKRIHTGEKPFKCEECGKAFKQSSTLTTHKIIHTGEKPYRCEECGKAFNRSSHLTTHKIIHTGEKPYKCEECGKAFNQSSTLSTHKFIHAGEKPYKCEECDKAFNRFSYLTKHKIIHTG--EKSYKCEECGKGFNWSSTLTKHKRIHTGEKPYKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAH 446 HSP 2 Score: 166.777 bits (421), Expect = 5.102e-43 Identity = 89/239 (37.24%), Postives = 127/239 (53.14%), Query Frame = 2
Query: 509 EIKYIGLQKHDCEVCCRTFSSAQALKSHRKSHQPDRTFQCETCLKCFAERSTLKRHMYIHLEEKPFKCEHCDRAFSDKSTLRRHTITHTGAKRFQCPRCDKKFTRNEHLRQHMYIHTAEKLYRCEICNKDFRQRSTRKNHMLLHRAESAYKCGACGAGFSRQSLYDKHVLWCTGNTDDELKCEECDKTFQDRGALKRHQLIHSDRSVLRRHVLPHEEKKPFQCHICHKDFIRKVSLQEH 1225
+I + G + + CE C + F+ + L +H+ H ++ ++CE C K F + STL H +IH EKP+KCE CD+AF+ S L +H I HTG K ++C C K F + L +H IHT EK Y+CE+C K F + S H ++H E YKC CG F+R H + TG + KCEEC K F L H+ IH+ +KP++C C K F R +L +H
Sbjct: 279 KIIHTGEKPYRCEECGKAFNRSSHLTTHKIIHTGEKPYKCEECGKAFNQSSTLSTHKFIHAGEKPYKCEECDKAFNRFSYLTKHKIIHTGEKSYKCEECGKGFNWSSTLTKHKRIHTGEKPYKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAHKIIHTG--EKPYKCEECGKAFSQSSILTTHKRIHTG-------------EKPYKCEECGKAFNRSSNLTKH 502 HSP 3 Score: 156.377 bits (394), Expect = 1.081e-39 Identity = 87/233 (37.34%), Postives = 119/233 (51.07%), Query Frame = 2
Query: 518 YIGLQKHDCEVCCRTFSSAQALKSHRKSHQPDRTFQCETCLKCFAERSTLKRHMYIHLEEKPFKCEHCDRAFSDKSTLRRHTITHTGAKRFQCPRCDKKFTRNEHLRQHMYIHTAEKLYRCEICNKDFRQRSTRKNHMLLHRAESAYKCGACGAGFSRQSLYDKHVLWCTGNTDDELKCEECDKTFQDRGALKRHQLIHSDRSVLRRHVLPHEEKKPFQCHICHKDFIRKVSL 1216
+ G + + CE C + F+ L H+ H +++++CE C K F STL +H IH EKP+KCE C +AF++ S L H + HTG K ++C C K F R+ L H IHT EK Y+CE C K F Q S H +H E YKC CG F+R S KH + TG + KCEEC K F L +H+ IH+ +KP+ C C F + +L
Sbjct: 338 HAGEKPYKCEECDKAFNRFSYLTKHKIIHTGEKSYKCEECGKGFNWSSTLTKHKRIHTGEKPYKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAHKIIHTGEKPYKCEECGKAFSQSSILTTHKRIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTG--EKSYKCEECGKAFNQSSTLTKHRKIHT-------------RQKPYNCEECDNTFNQSSNL 555 HSP 4 Score: 83.1889 bits (204), Expect = 3.163e-16 Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 2
Query: 509 EIKYIGLQKHDCEVCCRTFSSAQALKSHRKSHQPDRTFQCETCLKCFAERSTLKRHMYIHLEEKPFKCEHCDRAFSDKSTLRRHTITHTGAKRFQCPRCDKKFTRNEHL 835
+I + G + + CE C + FS + L +H++ H ++ ++CE C K F S L +H IH EK +KCE C +AF+ STL +H HT K + C CD F ++ +L
Sbjct: 447 KIIHTGEKPYKCEECGKAFSQSSILTTHKRIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKSYKCEECGKAFNQSSTLTKHRKIHTRQKPYNCEECDNTFNQSSNL 555 The following BLAST results are available for this feature:
BLAST of TCONS_00002192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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