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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002183 ID=TCONS_00002183|Name=TCONS_00002183|organism=Clytia hemisphaerica|type=transcript|length=399bp
TTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAGTTGGATCAAGAAG
TGCAAATCAACGACTATGTTCGTCCTGCGTGCTTGCTGGAGAAAGAACTA
ACTGCAGGAACTAAAGTTGTTATTTCTGGCTGGGGAACAACGCAACCAGG
TGGAAGCCAACCCAATATTCTCTAAAAAGCTGAGgtggACATTGTTAGTA
ATAGTGTATGCAACACGAAATATAATAATCGTATTGACAATTCAATGTTA
TGTGCTGCTGCTCCGGGGAAAGACTCATGTCAAGGAGATAGCGGTGGTCC
ACTTGTCGCTAATTTGAAAGATTCGAATGGTGGAAACCAATTTTATTTGG
CTGGTGTACTCAGTTGGGGTAGAAGCTGTGCAGATCACACATATCCAGG Run BLAST on NCBI transcript from alignment at sc0000018:997285..998720- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002183 ID=TCONS_00002183|Name=TCONS_00002183|organism=Clytia hemisphaerica|type=transcript|length=1436bp|location=Sequence derived from alignment at sc0000018:997285..998720- (Clytia hemisphaerica)
TTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAGTTGGATCAAGAAG
TGCAAATCAACGACTATGTTCGTCCTGCGTGCTTGCTGGAGAAAGAACTA
ACTGCAGGAACTAAAGTTGTTATTTCTGGCTGGGGAACAACGCAACCAGG
TGGAAGCCAACCCAATATTCTCTAAAAAGCTGAGGTAGCTTATTTATGTG
ATGGTGTTGTGAAGGAGTTCTACTGTGCCTNGCAACTCGGGCATAACAAC
TTGTAATATGACCAATACTGTATATAAAAAAAGATCACTCGTCAACCTTA
AGGACTCTGACCATAGTCGAAAAATTGATATTGGTATTTGAACATGAAAG
TTGTGTTCCAATAAGAATTTAATTGCAAAAATGACGTTACGAACTTTAAA
AAGACGTTCTTTAACGAAAATTGCTTAAAAATGGGTGATTAACCTTTTTC
TTTTAAAGTTTTTCAAACTGTCCGCAAAGAATTTAACAGTCTTAAATTTT
TTGGAGAAATTTTCTAAATTGATGCATTAAAAATTATGACTGTTTTTGTA
GAAAAATTGGGATGAAAAATTTGGTTAAAAAGCACTATTTTCAAAATGTT
TTCTTCGCCGAAGGTGCTGAAGGTGGGGGGTTTTAATGGGAGGTTCCCAA
GACCTTCCCTTAACTCTGTGCAAAATTTCAGCTTTATATGTATTTTTTTC
CGGTCATAACATAATTCCCTTTTACTAAAAAGTCGTCATCAAATCGTTCC
ATTGCGATTCTTAAATTTCAGACTCACGGATATATGGTCTAAAATGGGCC
CAAAAAATGTAAAACATGCCAAAATTTTGTTAGCTAACATCAGGGAGAAA
CATTTATTATGTTCCTTGCAAATATCAAAAGCCCTTAAGGCTCCCTTGTT
TTTAGAGTTTGCTAACTCTGATACAAGTTCTGAAACATCGTCTTTTTATT
TTCAGGTGGACATTGTTAGTAATAGTGTATGCAACACGAAATATAATAAT
CGTATTGACAATTCAATGTTATGTGCTGCTGCTCCGGGGAAAGACTCATG
TCAAGTAAGATTTCGTTAAGTTTTCTTTTGTTACGCTCTCAGAGCCTTAT
TATCGTGACTGTCACGGTTGATTTGAGTGCTGATATAAAAAATTTTGAAA
TTTTTGCCATTGTCGCACAAAAAATGCTAGCGCTATCTTTCTGTATTTCC
CTACGAGAAAAAATGATTGAAATTGACGCATTGTGACAAGGGACTTAAAC
ATAATCTACAAGGGACTTTATCCTATTGTAAGATACCAGTTTTACTTACG
AAATTATTATGGTTTTGTAGGGAGATAGCGGTGGTCCACTTGTCGCTAAT
TTGAAAGATTCGAATGGTGGAAACCAATTTTATTTGGCTGGTGTACTCAG
TTGGGGTAGAAGCTGTGCAGATCACACATATCCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002183-exon-sc0000018-1575043694:998537..998720 | TCONS_00002183-exon-sc0000018-1575043694:998537..998720 | Clytia hemisphaerica | exon |
| TCONS_00002183-exon-sc0000018-1575043694:997667..997765 | TCONS_00002183-exon-sc0000018-1575043694:997667..997765 | Clytia hemisphaerica | exon |
| TCONS_00002183-exon-sc0000018-1575043694:997285..997400 | TCONS_00002183-exon-sc0000018-1575043694:997285..997400 | Clytia hemisphaerica | exon |
| TCONS_00002183-exon-sc0000018-1510915933:998537..998720 | TCONS_00002183-exon-sc0000018-1510915933:998537..998720 | Clytia hemisphaerica | exon |
| TCONS_00002183-exon-sc0000018-1510915933:997667..997765 | TCONS_00002183-exon-sc0000018-1510915933:997667..997765 | Clytia hemisphaerica | exon |
| TCONS_00002183-exon-sc0000018-1510915933:997285..997400 | TCONS_00002183-exon-sc0000018-1510915933:997285..997400 | Clytia hemisphaerica | exon |
| TCONS_00002183-exon-sc0000018-1491911889:998537..998720 | TCONS_00002183-exon-sc0000018-1491911889:998537..998720 | Clytia hemisphaerica | exon |
| TCONS_00002183-exon-sc0000018-1491911889:997667..997765 | TCONS_00002183-exon-sc0000018-1491911889:997667..997765 | Clytia hemisphaerica | exon |
| TCONS_00002183-exon-sc0000018-1491911889:997285..997400 | TCONS_00002183-exon-sc0000018-1491911889:997285..997400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:997285..998720 - |
Blast
BLAST of TCONS_00002183 vs. Swiss-Prot (Human)
Match: TMPSC (Transmembrane protease serine 12 OS=Homo sapiens GN=TMPRSS12 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.515e-24 Identity = 53/134 (39.55%), Postives = 77/134 (57.46%), Query Frame = 2
Query: 17 NDISLFELDQEVQINDYVRPACL---LEKELTAGTKVVISGWGTTQPGGSQPNIL*KAEVDIVSNSVCNTK--YNNRIDNSMLCAAAP--GKDSCQGDSGGPLVANLKDSNGGNQFYLAGVLSWGRSCADHTYP 397
NDI+LF L + V+ NDY++P CL + + L TK ISGWG T+ G+ NIL AEV +S +CN++ Y I N+ CA D+C+GDSGGPL+ L + +F++ G+ S+G C +P
Sbjct: 170 NDIALFHLKKAVRYNDYIQPICLPFDVFQILDGNTKCFISGWGRTKEEGNATNILQDAEVHYISREMCNSERSYGGIIPNTSFCAGDEDGAFDTCRGDSGGPLMCYLPEY---KRFFVMGITSYGHGCGRRGFP 300
The following BLAST results are available for this feature:
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