TCONS_00002177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002177
Unique NameTCONS_00002177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002177 ID=TCONS_00002177|Name=TCONS_00002177|organism=Clytia hemisphaerica|type=transcript|length=702bp
CTCTTTATCCTTTTACAATAGGGATTACACATCCCCGTATGGATGCACCA
CTGGAGTGACTTTTGGTTTCTGGTTGCGACCTCTCTGGAAAACAACAGGA
GGATCATTCAATTACCTCATTCAGGGAAAAGCAACCAAACAAGGATTAAC
TTTTAATTCAGTTACCAACAGTGACATCCGGTAAGATATCAAGATTCCCT
AAAATTCCTACAGCAAGTATCACAAGTATACTACACTGTGACGACGAACC
ACGATTCTTTTGAGCACGCATCCAACAAACGAGATTAAAAGTCAGTCCTG
GCAGTTTAGATTTCAGGTATCCCCTTTGTTGAGTAGGTCTATTTTGGGAA
AATAAACCCTCTggattgttttttcattttttcacatGAATTAGTTTTTC
TCATTCTATGACTACCTTGGATTTTTCGACCttgttttactgaccaccct
gggttttcaacctcattttactgacatCCCTGGACTTTTACACTTGAAAA
ACTACCCCTTTGGATTTTTAAGAACACTCTActcgtcacacctcctcaac
ataggagGGTACCAGACTATTTCTCAAATAACCCATTATGTGTCACAACA
CTTTGCAACTAACACCATGGATTTCTAAATTCAAGGACGGTAGCAGATGT
CCTTTGACGTAAAAATCCTATGGCCTCAAAATATAGATGTCCCTGTATTG
TG
Run BLAST on NCBI

transcript from alignment at sc0000018:943296..943997-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002177 ID=TCONS_00002177|Name=TCONS_00002177|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0000018:943296..943997- (Clytia hemisphaerica)
CTCTTTATCCTTTTACAATAGGGATTACACATCCCCGTATGGATGCACCA
CTGGAGTGACTTTTGGTTTCTGGTTGCGACCTCTCTGGAAAACAACAGGA
GGATCATTCAATTACCTCATTCAGGGAAAAGCAACCAAACAAGGATTAAC
TTTTAATTCAGTTACCAACAGTGACATCCGGTAAGATATCAAGATTCCCT
AAAATTCCTACAGCAAGTATCACAAGTATACTACACTGTGACGACGAACC
ACGATTCTTTTGAGCACGCATCCAACAAACGAGATTAAAAGTCAGTCCTG
GCAGTTTAGATTTCAGGTATCCCCTTTGTTGAGTAGGTCTATTTTGGGAA
AATAAACCCTCTGGATTGTTTTTTCATTTTTTCACATGAATTAGTTTTTC
TCATTCTATGACTACCTTGGATTTTTCGACCTTGTTTTACTGACCACCCT
GGGTTTTCAACCTCATTTTACTGACATCCCTGGACTTTTACACTTGAAAA
ACTACCCCTTTGGATTTTTAAGAACACTCTACTCGTCACACCTCCTCAAC
ATAGGAGGGTACCAGACTATTTCTCAAATAACCCATTATGTGTCACAACA
CTTTGCAACTAACACCATGGATTTCTAAATTCAAGGACGGTAGCAGATGT
CCTTTGACGTAAAAATCCTATGGCCTCAAAATATAGATGTCCCTGTATTG
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001132XLOC_001132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002177-exon-sc0000018-1575043694:943296..943997TCONS_00002177-exon-sc0000018-1575043694:943296..943997Clytia hemisphaericaexon
TCONS_00002177-exon-sc0000018-1510915933:943296..943997TCONS_00002177-exon-sc0000018-1510915933:943296..943997Clytia hemisphaericaexon
TCONS_00002177-exon-sc0000018-1491911889:943296..943997TCONS_00002177-exon-sc0000018-1491911889:943296..943997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:943296..943997 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143926	0.0701752	0	0	0.0970461	0.0766871	0.0925198	0.107573	0.121284	0	0.0729081	0	2.73841	2.95134	0.263782	0.324013	0	0	3.54503	2.17581	0	0	0	0.161802	0.0772635	0.364775	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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