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TCONS_00002166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002166
Unique NameTCONS_00002166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002166 ID=TCONS_00002166|Name=TCONS_00002166|organism=Clytia hemisphaerica|type=transcript|length=1434bp
CTTTCTTCAAAATGACTGATTCTGGTTGTAAACGAGATTTTGTTCTTTTC
TGTATATattcggaaaaaaatgttttatgacttttttgtgaaTCATGACA
ATAAACGCAACAACTGCGTATAATGTTTACAGATACCTTAtaggcccttt
ttacgccaccttcccaaaaataacgccaataagggccggcatAAAAAGAG
CCGGTAAgatataggaaattttttgttattattgGCACACCTGGTAGTTT
TTCATTGTACATAACAAATAACACCTTATCATTAATTTATTGCATGTAAA
TGTATTCATAAGTTTTGTTTTAAGTAAGAAATTACCTTCATATTAGTTag
caaaattttatttattatatattaAAAGTTACataccttaagggaattta
ttttcgaaaattaaagtGCTTTTGTAAAGTAAattaattttcgtcaaaat
aaacaaaatttcgTCTTTGCAAGTTGAGTTCCTCGGCAAATTCAAAACTA
TTTAGGATTTTTGCTGCTCGCCAAAATTCGTTCCCTTTAGGTATAATATG
TAAAATCTGCGAAGTGATCACGTCTCATCTCGAttcacaagtttctaata
aaagatatatttttgtAAGTCATTCtcagaaatatgatttagacCATGTA
ATTGTTTCCTATATGTAAGTTTGGTTGGAACCTCAGATTTGTATGATTAA
TAAAAAAGCAGCGGTATTCGAGTTGAAGCGTGCTTAACTCTTGATCTAAA
GTTCCGGGTTCGAGCAAAGTGCAAATCACTTGGCTTATGGAACAAACAAA
TTCGATTGGGACAACACAGAAAGCTTAGGAATACGTTTGTTTCCTTCGGA
GAAGTTTGAGACATGAAAAGTCCgtctttttcgattttgacgaCACGAAA
ACCCGACGAATTCAGGTCTGCTTATATTGCGAGCTCGCCATAAACTTTAT
CATTGGAAGTGAATTCAGACTCTAAATTTAAATCGTCAATTAACATAAAT
ATGACAACATTTTATTATTCGACACGAATTGAAGCACATGTGTTCCACAC
TTGATGTCCTTGTTCAGTATCCCATCTGAACGACAACACATATTCTCCAA
CGTCCAAATTCTCAGGCACCTTCACTAAATCAACAATCGAGAAgggaaaa
attttctccgttccGTACAAATTGATCCCAAATCCACTCAAGCCTGGTCC
TGGAGCGGGAAATTGCGTACCCATTAGACATTGGTGCGGGTCTAAGAAGC
CGCCTGTTTGACCCACGCACGCCGGGATTGGGTTTTTGGTCCATTGTGAT
TTAGGAGGGAAGGTACCGTTGTTTGTTCGGACTGCTGCTATCTCCCTCCT
AGACGTTTCGTCCTCACCCCATTGTATCCATTGATGATCACCCACGAATT
GGAGAGAAGTCTTCTGAAAACATTCCTCCGTCAA
Run BLAST on NCBI

transcript from alignment at sc0000018:848129..849882-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002166 ID=TCONS_00002166|Name=TCONS_00002166|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at sc0000018:848129..849882- (Clytia hemisphaerica)
CTTTCTTCAAAATGACTGATTCTGGTTGTAAACGAGATTTTGTTCTTTTC TGTATATATTCGGAAAAAAATGTTTTATGACTTTTTTGTGAATCATGACA ATAAACGCAACAACTGCGTATAATGTTTACAGATACCTTATAGGCCCTTT TTACGCCACCTTCCCAAAAATAACGCCAATAAGGGCCGGCATAAAAAGAG CCGGTAAGATATAGGAAATTTTTTGTTATTATTGGCACACCTGGTAGTTT TTCATTGTACATAACAAATAACACCTTATCATTAATTTATTGCATGTAAA TGTATTCATAAGTTTTGTTTTAAGTAAGAAATTACCTTCATATTAGTTAG CAAAATTTTATTTATTATATATTAAAAGTTACATACCTTGAAGGGAACTT ATTTTAGAAAACTAAAGTACTTTAGTATAGTATTTTTTTAGTATTTCTGT ATAAAAAGGTTCATGACTTTATTTTGAGTCATGACAAAACCATACTGTCT AATTATGTATAATGTTTACAGATAATAGGAAATTTTTTGTTATCATTGGC GCACCCGGTAGTTTTTCATTGTACATAACAAAGGATTCTCACCTAATCAT TAATTTATTGCATATAAATGTATTCATAAGTTTTGTTTTAAGTAAGAAAT TACCTTTTCATATTGGTTAGCAAAATTTTATTTATTATATATTAAAAGTT ACATACCTTAAGGGAATTTATTTTCGAAAATTAAAGTGCTTTTGTAAAGT AAATTAATTTTCGTCAAAATAAACAAAATTTCGTCTTTGCAAGTTGAGTT CCTCGGCAAATTCAAAACTATTTAGGATTTTTGCTGCTCGCCAAAATTCG TTCCCTTTAGGTATAATATGTAAAATCTGCGAAGTGATCACGTCTCATCT CGATTCACAAGTTTCTAATAAAAGATATATTTTTGTAAGTCATTCTCAGA AATATGATTTAGACCATGTAATTGTTTCCTATATGTAAGTTTGGTTGGAA CCTCAGATTTGTATGATTAATAAAAAAGCAGCGGTATTCGAGTTGAAGCG TGCTTAACTCTTGATCTAAAGTTCCGGGTTCGAGCAAAGTGCAAATCACT TGGCTTATGGAACAAACAAATTCGATTGGGACAACACAGAAAGCTTAGGA ATACGTTTGTTTCCTTCGGAGAAGTTTGAGACATGAAAAGTCCGTCTTTT TCGATTTTGACGACACGAAAACCCGACGAATTCAGGTCTGCTTATATTGC GAGCTCGCCATAAACTTTATCATTGGAAGTGAATTCAGACTCTAAATTTA AATCGTCAATTAACATAAATATGACAACATTTTATTATTCGACACGAATT GAAGCACATGTGTTCCACACTTGATGTCCTTGTTCAGTATCCCATCTGAA CGACAACACATATTCTCCAACGTCCAAATTCTCAGGCACCTTCACTAAAT CAACAATCGAGAAGGGAAAAATTTTCTCCGTTCCGTACAAATTGATCCCA AATCCACTCAAGCCTGGTCCTGGAGCGGGAAATTGCGTACCCATTAGACA TTGGTGCGGGTCTAAGAAGCCGCCTGTTTGACCCACGCACGCCGGGATTG GGTTTTTGGTCCATTGTGATTTAGGAGGGAAGGTACCGTTGTTTGTTCGG ACTGCTGCTATCTCCCTCCTAGACGTTTCGTCCTCACCCCATTGTATCCA TTGATGATCACCCACGAATTGGAGAGAAGTCTTCTGAAAACATTCCTCCG TCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001129XLOC_001129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002166-exon-sc0000018-1575043694:849501..849882TCONS_00002166-exon-sc0000018-1575043694:849501..849882Clytia hemisphaericaexon
TCONS_00002166-exon-sc0000018-1575043694:848129..849180TCONS_00002166-exon-sc0000018-1575043694:848129..849180Clytia hemisphaericaexon
TCONS_00002166-exon-sc0000018-1510915933:849501..849882TCONS_00002166-exon-sc0000018-1510915933:849501..849882Clytia hemisphaericaexon
TCONS_00002166-exon-sc0000018-1510915933:848129..849180TCONS_00002166-exon-sc0000018-1510915933:848129..849180Clytia hemisphaericaexon
TCONS_00002166-exon-sc0000018-1491911889:849501..849882TCONS_00002166-exon-sc0000018-1491911889:849501..849882Clytia hemisphaericaexon
TCONS_00002166-exon-sc0000018-1491911889:848129..849180TCONS_00002166-exon-sc0000018-1491911889:848129..849180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:848129..849882 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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