Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002164 ID=TCONS_00002164|Name=TCONS_00002164|organism=Clytia hemisphaerica|type=transcript|length=399bp
TGTAAAGCAGCCAAAAAGGATTTTTAAAGATACAACAATCTAACTATACC
ATCGCCATCAATATGGGTTAGGTGAACATTACAACGCCCTCGTTCCGACA
AACGATACGCCATCCATCTGATCCAGTTGTTCAGAGGGAGTCCAGCTGAC
AAAAGTACGGTAAATTGTCGTTAATGACGTTCCTTTAAACTGACATCAAA
TGTTCAATGGGAATCCTTGAAAAGGGCCAAGTTTGTTGGCAGAactattt
attgatttttgaaccACCCACTGGTATTACCAGTAATCATCAATGAACTC
AAATGCTTCTTGGATGAGTGCTGTTCTTTGAAATACAGACATTACACCGT
AAACTTATGAGCGAATGGACTTCAGATGTGGACGAGAATACTGTCTGAG Run BLAST on NCBI transcript from alignment at sc0000018:842473..845399- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002164 ID=TCONS_00002164|Name=TCONS_00002164|organism=Clytia hemisphaerica|type=transcript|length=2927bp|location=Sequence derived from alignment at sc0000018:842473..845399- (Clytia hemisphaerica)
TGTAAAGCAGCCAAAAAGGATTTTTAAAGATACAACAATCTAACTGTAAG
ATCACAAACCGTTTATTTTTAAGGACTTTTAGGATATCATTAGTGTTGTT
TCCATAGAATCTCTTTACGGCTTTTAATTCTCAAACCTTACAATAAAACA
ATATTGCTAACCTGGTCGTCCTTCTTTTGGCATTTTACACAGCCGATAAG
AGTAACCTCCGCCATGATTCACATAGATCGCCCAAGCCACCTGCAATTAA
AAATGATTAAATTTTAGATTAATCATCGTTCGTTTGGATGAGAATGGAAT
TCGGTATCTTTTAGACAAAAAGCACGACTAAAAAAGTTAATTAATTTTTA
TTTGTGTAAAGAAAAACAAGCAGTCAACTTTGTGTGCTTTTACCTCAACC
TCTTGGCCTCGTTTCCATGTCGTAACAGAAATATTATGCACGAATTCAAC
ATCCTTTGCTCTCTGACCGTGACCGTAACCGCCGGTCTTCTGCCCACATT
TCAGTGCACCGCAACCATTCGGGTTACCACCGGATACACCACAAGGGCTG
TAAATCGGGGCGGCTCCTGGTGCCCGCCAGGGTGTGTACAACACTTTACT
TTCGTCTCTAACGCGACTGAAGGTACGAAGGGCGGGATCAAAAAGTGTGG
GCGTGTGTATCCATGTTTCATTTGTGAACCAGTTACAGATGGGACCAGGA
AACGCATAACCTTCACAATCATTGTTTTCTTTGCAGATGATCTTCCTTGG
GATCGTTAGGCCTGGTTTACACTGTAAACGTGTTTTCATACCAGCAAAAC
CTGTAAACCACGAGCCATTGTCTAATTGAATTCGTGTTTCAAAATCTAGC
CAGTTCGTTGGTTTGACCATAGCTCCATGACCGTGCACTGATTGTGCCCA
AAAAAGAAGAACTAAAATCGAGATCTGCCCAATACATGGATAGATTTTAA
GCTCCATTTTGTGTGAAATCTCCAATCTCCCAGTTTGGGTAATTCTTTAC
CCTTCTAACTATGTGCACGAATGCACTTAAAATGAATTCACTCTAAAAGA
CAAGTATAAATTCGGTTTACATGCAAGGACACAATTGTTTGTTATGATGC
AATGCACTCTTTTTGCTATTGCTATTCTGCTAGACATTATAAGTTTGTTT
GTTTAGTAAAAAGTAAATAAAGGTCTAACAGTGCTTTCCTTGCTTCCCTC
TCAAAGAGATATTCCACTCCTATTCCAATATTTAGTGTCAAAACTTCTTC
CCTGAGTGCATATCAATCCCCGCACTCCTTTCTCTAACGTCGTATATTCA
AGAAAAAGACCTTAAATATATTTGTCAAAAAATGAGGACCTTGAACCCTA
AACCTATAAGTGGGGGGCGTACGGTTTTTCGGAATTGCGGAAATCGGCCC
TTTTTTCTTCGGAATTTCGGAATTCATGCAAAATTCCTTCGGTATTTCGG
AATTCTGAAACTGTTTCGGTATCGGAAATCCATGAATTTTTGCTTTGAAA
TTTCGGTATTATTAAGTTTTTATCCCCTTTTTTTGGAATTCATACATGAA
AAATCAAATTTGATTAAAAATTAGTCAAAACGAGGNAAAAAGTAAATAAA
GGTCTAACAGTGCTTTCCTTGCTTCCCTCTCAAAGAGATATTCCACTCCT
ATTCCAATATTTAGTGTCAAAACTTCTTCCCTGAGTGCATATCAATCGCC
GCGCTCCTTTCTCTAACGTCGTATATTCAAGAAAAAGTCCTTGAATTTTG
TAAATATATTTGTCAAAAAATGAGGACCTTGAACCCTAAACCTATAAGAA
ATGGCTAACGATTTTATACTATTATCTTGGCTTAGCCAAGATATACTGGT
TTTCAATTAAAAATGTTCTCGTCAATGCATTATTTCCATGCAAATTATTT
TTGCAGATACCATCGCCATCAATATGGGTTAGGTGAACATTACAACGCCC
TCGTTCCGACAAACGATACGCCATCCATCTGATCCAGTTGTTCAGAGGGA
GTCCAGCTGACAAAAGTACGGTAAATTGTCGTTAATGACGTTCCTTTAAA
CTGACATCAAATGTTCAATGGGAATCCTTGAAAAGGGCCAAGTTTGTTGG
CAGAACTATTTATTGATTTTTGAACCACCCACTGGTATTACCAGTAATCA
TCAATGAACTCAAATGCTTCTTGGATGAGTGCTGTTCTTTGAAATACAGA
CATTACACCGTAAACTTATGAGGTACAAATTATCAATACGTATTTGTGTA
TTTTGATTATGCAAATTTGGATTCAACATTGTACATTATCGTAGGTAACT
AAGCGCGAACAGTATTGAGTTGAATCATTCTGGAAGAATATAAAGTTATC
CCCGATGTAAAAATGATCTCCTTTCATGCACTTAAGATTTGTCTTTTCAT
AGATCTAAAGCGCATTCGCTTTTAAGNATGCACTTAAGATTTGTCTTTTC
ATAGATCTAAAGTGCATTCGCTTTTAAATGTGCACTCTTTTTTTCTGCCA
CGTGAAAACCACTCTCATGAGAATTTTTCAAATACTTTTTTGAATTATGA
ATTATAAGCATACAAAAATTTGAAAAAAGGCTTGGAGATGCTTAGGTTGA
GGGCTTTGCAAGGCTCAAAAATGCTTCTAAGGATGCTCATATCCCAAGCA
AAGTACTTGGTACAGATATGACATAAATTTAAGCATATGCTATTAAGCAT
TACCTGCGCCTGCATTTTACAATTTCGGCTGTTTTTGGGTGGAATTTTAC
GTATTTTTGGAACTTCTCTAAAATTTAGGATAAAAGCATCCTTCAAGCAT
TTTTCAGCCTTGTCAATATCTCGATCTAAGCATCTCTGAGTCAGTTTTTG
GATTTTTGTATGTTTATAAAAAAACACATGTACTTACAGCGAATGGACTT
CAGATGTGGACGAGAATACTGTCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002164-exon-sc0000018-1575043694:845355..845399 | TCONS_00002164-exon-sc0000018-1575043694:845355..845399 | Clytia hemisphaerica | exon |
| TCONS_00002164-exon-sc0000018-1575043694:843178..843493 | TCONS_00002164-exon-sc0000018-1575043694:843178..843493 | Clytia hemisphaerica | exon |
| TCONS_00002164-exon-sc0000018-1575043694:842473..842510 | TCONS_00002164-exon-sc0000018-1575043694:842473..842510 | Clytia hemisphaerica | exon |
| TCONS_00002164-exon-sc0000018-1510915933:845355..845399 | TCONS_00002164-exon-sc0000018-1510915933:845355..845399 | Clytia hemisphaerica | exon |
| TCONS_00002164-exon-sc0000018-1510915933:843178..843493 | TCONS_00002164-exon-sc0000018-1510915933:843178..843493 | Clytia hemisphaerica | exon |
| TCONS_00002164-exon-sc0000018-1510915933:842473..842510 | TCONS_00002164-exon-sc0000018-1510915933:842473..842510 | Clytia hemisphaerica | exon |
| TCONS_00002164-exon-sc0000018-1491911889:845355..845399 | TCONS_00002164-exon-sc0000018-1491911889:845355..845399 | Clytia hemisphaerica | exon |
| TCONS_00002164-exon-sc0000018-1491911889:843178..843493 | TCONS_00002164-exon-sc0000018-1491911889:843178..843493 | Clytia hemisphaerica | exon |
| TCONS_00002164-exon-sc0000018-1491911889:842473..842510 | TCONS_00002164-exon-sc0000018-1491911889:842473..842510 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:842473..845399 - |
Blast
The following BLAST results are available for this feature:
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