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TCONS_00002160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002160
Unique NameTCONS_00002160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002160 ID=TCONS_00002160|Name=TCONS_00002160|organism=Clytia hemisphaerica|type=transcript|length=2123bp
ctttatttttagggTTTCTGAGCGCTTATCTCCGAAATCTTGAgtttctt
aaaaataatttgccAGGGAAAAAATTTATGATTGTTGAAAATTTAATAAT
TGATGAAAAAGTGATTCATCCTTGCTTCACTCGGAATCCTATTCAATCCT
TGTAAGGATTAAAACATGAATCAAATGTTGAATGGGATCTCTACGATGGA
GGTAATCATGGAAAAACACCACAAAAATATATGTATGATTCTTCATTTGA
TATGCTAGTTaccaattttattattttcaaagcACAGAGTTATTCTTGTT
GAAATctataaaattttcaagttaaaaagtTTTAGTGGCATAAAAAACGA
AATACAGTCAATTAGAGAGGTTTTTGTGAACTGCAAGACAACTAACCAAT
TGGATCGTCTTTTCTACAATAATAGTCTACCCTCGACAGGGAGAGATGCT
TGAGATTGTAATCGTTGCAGTGGTTCTAGTGGCTGGCTCTTTGATGGTCG
TCCAAGGTTTTGTCATGAGAAGTTGTTTCCAAGTTGGTCAACCAACCCAA
AACTCTCACTTTCAATGCAAAACCTTATCTAGGTTgtaaacaaaactaaa
aaccTAAAAGACAACTGTATTGTAAAAACATTGATATGTATATTATTTGA
TTGACGAGTGGATTTATAATTTTCCGGTACGAATTTAATTTAACGAGATT
TATTTTTGTGAGCCAGCGCGATaaaattttgaagtattttaaatataaat
ttaatttcttgGGGATTTCAACAGTTTCTTTTGCCTAACTGGATCTAACA
TTTCGAAAAGAAGCccccaaaaaagatttttgtcactgatttttatcaat
tttgatttatattgAGTGTAAATAGCAAAAGtagttagattttttttctg
aggtATTTGTAACATACCTATTGTATATAGAGGTATCATTTTCTTATTGT
TGTATTTTAAATTCATATTGAAGAAGAACTCGGCACGactttcaaaatgg
tagatgtGGAAAACAGCTGCTGAATAATGCTGAATGAACGACGCttattt
gaagaaaatcaaaatgtcatAAACAGACTATTCAACTAAACTAAAGAACT
GtttgatttgattgaattttttgaatGGAGGTATTGCCTTGCTAGCAGCT
ACCTATTCTTTCTTCGATTTTGATTATTCTTTTTTGTGAATGANTTACTA
GCAGCTACCTATTCTTTCTTCGATTTTGATTATTCTTTTTTTGTGAATGA
ATTGGTGTAAAAGAAACTATTTTGGCAGGGTGTGTTGCCTTCCCTCGCTT
gatttttcgaatatttctttcGTGAGCGAGAGAAAGAAGAATTTTGAAAG
GAAGCACTTTGATGTACTGGAATTGTCAGTTTGTTAACGTTAACTGAGTC
TATGTTTTTGGTGGTGTTTGGTTGATGGCGAGAATTCTCGGAATTTCACG
TTCAAGAAGATAGGAACTATTCATTACTTGGATCGTAAAAAgcTAACTAT
GACCACCTTGTGAAGAAAACTTCGTTCCATAACGCCGTATTGAAGATTCC
GACATTGAACAAAATCGCAACATTTGCTTGGTTACAACGCTATGGCAATC
GTTGTGATTTTATGCGCCAtttctgtttttgttgtttGCACGTGTATACA
GACCCTATTCTTGTTGAAATGTCCTTGTTTAAAGAACCGAGTGTGTACCG
TACCTAATCGATGTAATGCCTCAATGCATTCTGGGCAAATGTGACTCATG
AATAAACGACCGTCatgcaattttttggaaagattttgCATTCATGTATT
TTAGAGGGTAACTTATTCATTTGATGAAATTTATGTTTTAAGCATCCAGT
GAAAATGGAGACTTCTTCATAGAAAACCAAAAGTATTTCATGATCAAATG
GAAGATTTTGTTTGGATTCTCTCCTGTCACTGGCATTTTGCACGTTTGTC
GCGATTTTTTGTTAATAGTTCTTGGTAAACTAAATGTTATGACACTTTGT
AAATAATTTGagatttcttataattttttatattaaaaattgaaaatata
cttGAATTTTATTCCTATAATTTTTCCACATGCTTCCCAacactttgaaa
ataaaagtactGATAAAGTGCGA
Run BLAST on NCBI

transcript from alignment at sc0000018:831730..834663-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002160 ID=TCONS_00002160|Name=TCONS_00002160|organism=Clytia hemisphaerica|type=transcript|length=2934bp|location=Sequence derived from alignment at sc0000018:831730..834663- (Clytia hemisphaerica)
CTTTATTTTTAGGGTTTCTGAGCGCTTATCTCCGAAATCTTGAGTTTCTT AAAAATAATTTGCCAGGGAAAAAATTTATGATTGTTGAAAATTTAATAAT TGATGAAAAAGTGATTCATCCTTGCTTCACTCGGAATCCTATTCAATCCT TGTAAGGATTAAAACATGAATCAAATGTTGAATGGGATCTCTACGATGGA GGTAATCATGGAAAAACACCACAAAAATATATGTATGATTCTTCATTTGA TATGCTAGTTACCAATTTTATTATTTTCAAAGCACAGAGTTATTCTTGTT GAAATCTATAAAATTTTCAAGTTAAAAAGTTTTAGTGGCATAAAAAACGA AATACAGTCAATTAGAGAGGTTTTTGTGAACTGCAAGACAACTAACCAAT TGGATCGTCTTTTCTACAATAATAGTCTACCCTCGACAGGGAGAGATGCT TGAGATTGTAATCGTTGCAGTGGTTCTAGTGGCTGGCTCTTTGATGGTCG TCCAAGGTTTTGTCATGAGAAGTTGTTTCCAAGTTGGTCAACCAACCCAA AACTCTCACTTTCAATGCAAAACCTTATCTAGGTTGTAAACAAAACTAAA AACCTAAAAGACAACTGTATTGTAAAAACATTGATATGTATATTATTTGA TTGACGAGTGGATTTATAATTTTCCGGTACGAATTTAATTTAACGAGATT TATTTTTGTGAGCCAGCGCGATAAAATTTTGAAGTATTTTAAATATAAAT TTAATTTCTTGGGGATTTCAACAGTTTCTTTTGCCTAACTGGATCTAACA TTTCGAAAAGAAGCCCCCAAAAAAGATTTTTGTCACTGATTTTTATCAAT TTTGATTTATATTGAGTGTAAATAGCAAAAGTAGTTAGATTTTTTTTCTG AGGTATTTGTAACATACCTATTGTATATAGAGGTATCATTTTCTTATTGT TGTATTTTAAATTCATATTGAAGAAGAACTCGGCACGACTTTCAAAATGG TAGATGTGGAAAACAGCTGCTGAATAATGCTGAATGAACGACGCTTATTT GAAGAAAATCAAAATGTCATAAACAGACTATTCAACTAAACTAAAGAACT GTTTGATTTGATTGAATTTTTTGAATGGAGGTATTGCCTTGCTAGCAGCT ACCTATTCTTTCTTCGATTTTGATTATTCTTTTTTGTGAATGANTTACTA GCAGCTACCTATTCTTTCTTCGATTTTGATTATTCTTTTTTTGTGAATGA ATTGGTGTAAAAGAAACTATTTTGGCAGGGTGTGTTGCCTTCCCTCGCTT GATTTTTCGAATATTTCTTTCGTGAGCGAGAGAAAGAAGAATTTTGAAAG GAAGCACTTTGATGTACTGGAATTGTCAGTTTGTTAACGTTAACTGAGTC TATGTTTTTGGTGGTGTTTGGTTGATGGCGAGAATTCTCGGAATTTCACG TTCAAGAAGATAGGAACTATTCATTACTTGGATCGTAAAAAGTAAGCATT TCTCTTTCATAAAGACCTTTTGACGAAATTATACCTCTAACATAGCCCGT AATAAATACCTCGGTCTTGAAGAGTTTTGTTTCTTTTTACTGTCTCTAAC TCTAACTTGCGTTGAAAAATTTAGTTTGTTTTGCTCACTTTTGGTCACGT GATTAGATCACAGTTTGGACCAATCCAAGAGAAATATTGATAACGTTAAC TGAGCAATTCGATTTTTATCTTTATTTGTTAAGAGTTTTACGGGGTTACG GACTTTCTACGTTCTAAGGACTTTTATTACAAACTATGTATATACGTTCT AACCATGACAAAAGAATCAAGAAAGTCACTCTCTGAATTCAATTATATTG GGAGTAAAACATTGTTATAATTGAATGTAAAGCATGGGAAGAGTACCCTG AATGCGTGTTTCATCACCTGGGCACCAGAAAAGTTTATTTTCTGCAGAAT TGTCTTAATACCTTTTTGTTTTCTCTCAAATTGTTAACAATTTTTGTTTC AGCCCGTTTCTTCGAATACCTTAATCCCTCAATACACAGCTTAGAAAGTT GAATAGACTTCAAATTGCATTCATATAATTCTTCCTTTTTGACACCTTTT TCTTGCTTCCATTAGCAATTTTCATTCAATTCAGTAGATTCTAAATTACA TCACTTAACTCCAAGAGGGGGATTTCAAACCAGAGCAGTAAAGTTTATTA CTGATTTCTCAGTCTCCAGAATGTGTAAGGAGAATAGATATTGAGAGCTA GATTAGCTCGTACACACCTTCGATATTGATGTAATGTTTTCATTTTTTCA AGGCTAACTATGACCACCTTGTGAAGAAAACTTCGTTCCATAACGCCGTA TTGAAGATTCCGACATTGAACAAAATCGCAACATTTGCTTGGTTACAACG CTATGGCAATCGTTGTGATTTTATGCGCCATTTCTGTTTTTGTTGTTTGC ACGTGTATACAGACCCTATTCTTGTTGAAATGTCCTTGTTTAAAGAACCG AGTGTGTACCGTACCTAATCGATGTAATGCCTCAATGCATTCTGGGCAAA TGTGACTCATGAATAAACGACCGTCATGCAATTTTTTGGAAAGATTTTGC ATTCATGTATTTTAGAGGGTAACTTATTCATTTGATGAAATTTATGTTTT AAGCATCCAGTGAAAATGGAGACTTCTTCATAGAAAACCAAAAGTATTTC ATGATCAAATGGAAGATTTTGTTTGGATTCTCTCCTGTCACTGGCATTTT GCACGTTTGTCGCGATTTTTTGTTAATAGTTCTTGGTAAACTAAATGTTA TGACACTTTGTAAATAATTTGAGATTTCTTATAATTTTTTATATTAAAAA TTGAAAATATACTTGAATTTTATTCCTATAATTTTTCCACATGCTTCCCA ACACTTTGAAAATAAAAGTACTGATAAAGTGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001126XLOC_001126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002160-exon-sc0000018-1575043694:833173..834663TCONS_00002160-exon-sc0000018-1575043694:833173..834663Clytia hemisphaericaexon
TCONS_00002160-exon-sc0000018-1575043694:831730..832361TCONS_00002160-exon-sc0000018-1575043694:831730..832361Clytia hemisphaericaexon
TCONS_00002160-exon-sc0000018-1510915933:833173..834663TCONS_00002160-exon-sc0000018-1510915933:833173..834663Clytia hemisphaericaexon
TCONS_00002160-exon-sc0000018-1510915933:831730..832361TCONS_00002160-exon-sc0000018-1510915933:831730..832361Clytia hemisphaericaexon
TCONS_00002160-exon-sc0000018-1491911889:833173..834663TCONS_00002160-exon-sc0000018-1491911889:833173..834663Clytia hemisphaericaexon
TCONS_00002160-exon-sc0000018-1491911889:831730..832361TCONS_00002160-exon-sc0000018-1491911889:831730..832361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:831730..834663 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166823 0.124001 0.143977 0.184795 0.249967 0.197527 1.38219 1.36092 7.32571 1.97347 5.57747 5.25889 63.3888 47.6315 53.5059 38.8331 9.62907 14.7614 34.561 38.5654 46.2276 42.7349 18.2563 34.5805 19.0343 30.9181 15.4727 4.27993 0.329322 0.143797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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