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TCONS_00002159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002159
Unique NameTCONS_00002159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002159 ID=TCONS_00002159|Name=TCONS_00002159|organism=Clytia hemisphaerica|type=transcript|length=662bp
TTTTTGCTGATACAAATGCATGCAGAATTCCCAAGATGGCATATCAAAAC
TGTATGGTTTAAAATAAATAGAGGATCTTTGTTAATGAAGTAGCATCAGT
CTTTCATGTGAACAGGAGAAGGAGGTTGACGCGAACATAGCATCACAAAC
TGACCAAGCATGGGATTCTTCGAGTGTTTGATAGCGTTTTCGTTGATGAT
ATTGGTAGCTGCTGgaaataacaacaacaacaacaacaatttgTTCACCT
TCTTGAATACCAACATCCAGTACACCTATTGTGGTTGGCAAATAATGGAT
GCTTCATCGCAATTATGCTGCAATAACAATCTCTACAATGCACTCCCCTA
CCATCGCTGTTGTGGGTCTACCACTTACAACACCAAATCTCAAAAATGTT
ACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATGCGGAAGAAATTACTAC
GATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCAACCGCAATGA
GTATGGAGTTTGTCGAGGCTTTGTCTTGAGAAGAGCAGCTCCTGAAGCCA
AAGACTCTGCTAAATCATTAAATATGATGTTGCcaattttttagaattct
tGTAATTTTTATGCTATGAGAATATTTTCTGTTAATTTACCGTTCAAATA
ACACTTCAGCAA
Run BLAST on NCBI

protein sequence of TCONS_00002159-protein

>TCONS_00002159-protein ID=TCONS_00002159-protein|Name=TCONS_00002159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MGFFECLIAFSLMILVAAGNNNNNNNNLFTFLNTNIQYTYCGWQIMDASS
QLCCNNNLYNALPYHRCCGSTTYNTKSQKCYRGKVYSRKVRCGRNYYDPN
TEFCVNYKVFNRNEYGVCRGFVLRRAAPEAKDSAKSLNMMLPIF
Run BLAST on NCBI

transcript from alignment at sc0000018:826151..827172-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002159 ID=TCONS_00002159|Name=TCONS_00002159|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at sc0000018:826151..827172- (Clytia hemisphaerica)
TTTTTGCTGATACAAATGCATGCAGAATTCCCAAGATGGCATATCAAAAC TGTATGGTTTAAAATAAATAGAGGATCTTTGTTAATGAAGTAGCATCAGT CTTTCATGTGAACAGGAGAAGGAGGTTGACGCGAACATAGCATCACAAAC TGACCAAGCATGGGATTCTTCGAGTGTTTGATAGCGTTTTCGTTGATGAT ATTGGTAGCTGCTGGAAATAACAACAACAACAACAACAATTTGTTCACCT TCTTGAATACCAACATCCAGTACACCTATTGTAAGTAAAGAACATATATT CCTGAGTCGACCGCTAATTTGGCTACTGTAATACAGTATTGATTTTCCTA AAACAAAATACATCCCTGTCTCACAATTTCGGTAGAGCCCTTATAAATAT TTCCCCCAAAACATCATATTTACTGTTCAGTATTGAATTGAAAATGTTGA AAGTCTCCCTTATTACTGTAATTGTTGACAAAAATTTTTCCTCATTTCAG GTGGTTGGCAAATAATGGATGCTTCATCGCAATTATGCTGCAATAACAAT CTCTACAATGCACTCCCCTACCATCGCTGTTGTGGGTGAGCTAAGCTATT GTTTCGTTCAAACATTCGTCACTTGATTGAAAATAGGACCTCAAAATAGA CTTTTGGGATCAAAATATTAGTTTTTGTATTTCAAGTTAGAAACATTCCT TGGAACCTTTGTCAATTTTTTATAGGTCTACCACTTACAACACCAAATCT CAAAAATGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATGCGGAAG AAATTACTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCA ACCGCAATGAGTATGGAGTTTGTCGAGGCTTTGTCTTGAGAAGAGCAGCT CCTGAAGCCAAAGACTCTGCTAAATCATTAAATATGATGTTGCCAATTTT TTAGAATTCTTGTAATTTTTATGCTATGAGAATATTTTCTGTTAATTTAC CGTTCAAATAACACTTCAGCAA

Coding sequence (CDS) from alignment at sc0000018:826151..827172-

>TCONS_00002159 ID=TCONS_00002159|Name=TCONS_00002159|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at sc0000018:826151..827172- (Clytia hemisphaerica)
GTCTACCACTTACAACACCAAATCTCAAAAATGTTACCGTGGCAAAGTTT
ACTCTCGTAAAGTCCGATGCGGAAGAAATTACTACGATCCTAACACCGAA
TTCTGCGTCAATTACAAAGTGTTCAACCGCAATGAGTATGGAGTTTGTCG
AGGCTTTGTCTTGAGAAGAGCAGCTCCTGAAGCCAAAGACTCTGCTAAAT
CATTAAATATGATGTTGCCAATTTTTTAGGTGGTTGGCAAATAATGGATG
CTTCATCGCAATTATGCTGCAATAACAATCTCTACAATGCACTCCCCTAC
CATCGCTGTTGTGGATGGGATTCTTCGAGTGTTTGATAGCGTTTTCGTTG
ATGATATTGGTAGCTGCTGGAAATAACAACAACAACAACAACAATTTGTT
CACCTTCTTGAATACCAACATCCAGTACACCTATTGTCTACCACTTACAA
CACCAAATCTCAAAAATGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCC
GATGCGGAAGAAATTACTACGATCCTAACACCGAATTCTGCGTCAATTAC
AAAGTGTTCAACCGCAATGAGTATGGAGTTTGTCGAGGCTTTGTCTTGAG
AAGAGCAGCTCCTGAAGCCAAAGACTCTGCTAAATCATTAAATATGATGT
TGCCAATTTTTTAGGTGGTTGGCAAATAATGGATGCTTCATCGCAATTAT
GCTGCAATAACAATCTCTACAATGCACTCCCCTACCATCGCTGTTGTGGA
TGGGATTCTTCGAGTGTTTGATAGCGTTTTCGTTGATGATATTGGTAGCT
GCTGGAAATAACAACAACAACAACAACAATTTGTTCACCTTCTTGAATAC
CAACATCCAGTACACCTATTGTCTACCACTTACAACACCAAATCTCAAAA
ATGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATGCGGAAGAAATT
ACTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCAACCGC
AATGAGTATGGAGTTTGTCGAGGCTTTGTCTTGAGAAGAGCAGCTCCTGA
AGCCAAAGACTCTGCTAAATCATTAAATATGATGTTGCCAATTTTTTAGG
TGGTTGGCAAATAATGGATGCTTCATCGCAATTATGCTGCAATAACAATC
TCTACAATGCACTCCCCTACCATCGCTGTTGTGGATGGGATTCTTCGAGT
GTTTGATAGCGTTTTCGTTGATGATATTGGTAGCTGCTGGAAATAACAAC
AACAACAACAACAATTTGTTCACCTTCTTGAATACCAACATCCAGTACAC
CTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001125XLOC_001125Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002159-proteinTCONS_00002159-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002159-exon-sc0000018-1575043694:826893..827172TCONS_00002159-exon-sc0000018-1575043694:826893..827172Clytia hemisphaericaexon
TCONS_00002159-exon-sc0000018-1575043694:826588..826672TCONS_00002159-exon-sc0000018-1575043694:826588..826672Clytia hemisphaericaexon
TCONS_00002159-exon-sc0000018-1575043694:826151..826447TCONS_00002159-exon-sc0000018-1575043694:826151..826447Clytia hemisphaericaexon
TCONS_00002159-exon-sc0000018-1510915933:826893..827172TCONS_00002159-exon-sc0000018-1510915933:826893..827172Clytia hemisphaericaexon
TCONS_00002159-exon-sc0000018-1510915933:826588..826672TCONS_00002159-exon-sc0000018-1510915933:826588..826672Clytia hemisphaericaexon
TCONS_00002159-exon-sc0000018-1510915933:826151..826447TCONS_00002159-exon-sc0000018-1510915933:826151..826447Clytia hemisphaericaexon
TCONS_00002159-exon-sc0000018-1491911889:826893..827172TCONS_00002159-exon-sc0000018-1491911889:826893..827172Clytia hemisphaericaexon
TCONS_00002159-exon-sc0000018-1491911889:826588..826672TCONS_00002159-exon-sc0000018-1491911889:826588..826672Clytia hemisphaericaexon
TCONS_00002159-exon-sc0000018-1491911889:826151..826447TCONS_00002159-exon-sc0000018-1491911889:826151..826447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:826151..827172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2048.83 1988.31 1318.9 1146.65 2.15608 2.39841 2.95434 0.935332 0.285667 1.71245 1.10151 0 0.220663 0.829885 0.0889423 0.0477244 0 0 0 0 2.92102 1.15131 779.426 639.348 0 0 30.3462 49.5405 317.122 359.089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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