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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002159 ID=TCONS_00002159|Name=TCONS_00002159|organism=Clytia hemisphaerica|type=transcript|length=662bp
TTTTTGCTGATACAAATGCATGCAGAATTCCCAAGATGGCATATCAAAAC
TGTATGGTTTAAAATAAATAGAGGATCTTTGTTAATGAAGTAGCATCAGT
CTTTCATGTGAACAGGAGAAGGAGGTTGACGCGAACATAGCATCACAAAC
TGACCAAGCATGGGATTCTTCGAGTGTTTGATAGCGTTTTCGTTGATGAT
ATTGGTAGCTGCTGgaaataacaacaacaacaacaacaatttgTTCACCT
TCTTGAATACCAACATCCAGTACACCTATTGTGGTTGGCAAATAATGGAT
GCTTCATCGCAATTATGCTGCAATAACAATCTCTACAATGCACTCCCCTA
CCATCGCTGTTGTGGGTCTACCACTTACAACACCAAATCTCAAAAATGTT
ACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATGCGGAAGAAATTACTAC
GATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCAACCGCAATGA
GTATGGAGTTTGTCGAGGCTTTGTCTTGAGAAGAGCAGCTCCTGAAGCCA
AAGACTCTGCTAAATCATTAAATATGATGTTGCcaattttttagaattct
tGTAATTTTTATGCTATGAGAATATTTTCTGTTAATTTACCGTTCAAATA
ACACTTCAGCAA Run BLAST on NCBI protein sequence of TCONS_00002159-protein >TCONS_00002159-protein ID=TCONS_00002159-protein|Name=TCONS_00002159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MGFFECLIAFSLMILVAAGNNNNNNNNLFTFLNTNIQYTYCGWQIMDASS
QLCCNNNLYNALPYHRCCGSTTYNTKSQKCYRGKVYSRKVRCGRNYYDPN
TEFCVNYKVFNRNEYGVCRGFVLRRAAPEAKDSAKSLNMMLPIF Run BLAST on NCBI transcript from alignment at sc0000018:826151..827172- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002159 ID=TCONS_00002159|Name=TCONS_00002159|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at sc0000018:826151..827172- (Clytia hemisphaerica)
TTTTTGCTGATACAAATGCATGCAGAATTCCCAAGATGGCATATCAAAAC
TGTATGGTTTAAAATAAATAGAGGATCTTTGTTAATGAAGTAGCATCAGT
CTTTCATGTGAACAGGAGAAGGAGGTTGACGCGAACATAGCATCACAAAC
TGACCAAGCATGGGATTCTTCGAGTGTTTGATAGCGTTTTCGTTGATGAT
ATTGGTAGCTGCTGGAAATAACAACAACAACAACAACAATTTGTTCACCT
TCTTGAATACCAACATCCAGTACACCTATTGTAAGTAAAGAACATATATT
CCTGAGTCGACCGCTAATTTGGCTACTGTAATACAGTATTGATTTTCCTA
AAACAAAATACATCCCTGTCTCACAATTTCGGTAGAGCCCTTATAAATAT
TTCCCCCAAAACATCATATTTACTGTTCAGTATTGAATTGAAAATGTTGA
AAGTCTCCCTTATTACTGTAATTGTTGACAAAAATTTTTCCTCATTTCAG
GTGGTTGGCAAATAATGGATGCTTCATCGCAATTATGCTGCAATAACAAT
CTCTACAATGCACTCCCCTACCATCGCTGTTGTGGGTGAGCTAAGCTATT
GTTTCGTTCAAACATTCGTCACTTGATTGAAAATAGGACCTCAAAATAGA
CTTTTGGGATCAAAATATTAGTTTTTGTATTTCAAGTTAGAAACATTCCT
TGGAACCTTTGTCAATTTTTTATAGGTCTACCACTTACAACACCAAATCT
CAAAAATGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATGCGGAAG
AAATTACTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCA
ACCGCAATGAGTATGGAGTTTGTCGAGGCTTTGTCTTGAGAAGAGCAGCT
CCTGAAGCCAAAGACTCTGCTAAATCATTAAATATGATGTTGCCAATTTT
TTAGAATTCTTGTAATTTTTATGCTATGAGAATATTTTCTGTTAATTTAC
CGTTCAAATAACACTTCAGCAA Coding sequence (CDS) from alignment at sc0000018:826151..827172- >TCONS_00002159 ID=TCONS_00002159|Name=TCONS_00002159|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at sc0000018:826151..827172- (Clytia hemisphaerica)
GTCTACCACTTACAACACCAAATCTCAAAAATGTTACCGTGGCAAAGTTT
ACTCTCGTAAAGTCCGATGCGGAAGAAATTACTACGATCCTAACACCGAA
TTCTGCGTCAATTACAAAGTGTTCAACCGCAATGAGTATGGAGTTTGTCG
AGGCTTTGTCTTGAGAAGAGCAGCTCCTGAAGCCAAAGACTCTGCTAAAT
CATTAAATATGATGTTGCCAATTTTTTAGGTGGTTGGCAAATAATGGATG
CTTCATCGCAATTATGCTGCAATAACAATCTCTACAATGCACTCCCCTAC
CATCGCTGTTGTGGATGGGATTCTTCGAGTGTTTGATAGCGTTTTCGTTG
ATGATATTGGTAGCTGCTGGAAATAACAACAACAACAACAACAATTTGTT
CACCTTCTTGAATACCAACATCCAGTACACCTATTGTCTACCACTTACAA
CACCAAATCTCAAAAATGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCC
GATGCGGAAGAAATTACTACGATCCTAACACCGAATTCTGCGTCAATTAC
AAAGTGTTCAACCGCAATGAGTATGGAGTTTGTCGAGGCTTTGTCTTGAG
AAGAGCAGCTCCTGAAGCCAAAGACTCTGCTAAATCATTAAATATGATGT
TGCCAATTTTTTAGGTGGTTGGCAAATAATGGATGCTTCATCGCAATTAT
GCTGCAATAACAATCTCTACAATGCACTCCCCTACCATCGCTGTTGTGGA
TGGGATTCTTCGAGTGTTTGATAGCGTTTTCGTTGATGATATTGGTAGCT
GCTGGAAATAACAACAACAACAACAACAATTTGTTCACCTTCTTGAATAC
CAACATCCAGTACACCTATTGTCTACCACTTACAACACCAAATCTCAAAA
ATGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATGCGGAAGAAATT
ACTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCAACCGC
AATGAGTATGGAGTTTGTCGAGGCTTTGTCTTGAGAAGAGCAGCTCCTGA
AGCCAAAGACTCTGCTAAATCATTAAATATGATGTTGCCAATTTTTTAGG
TGGTTGGCAAATAATGGATGCTTCATCGCAATTATGCTGCAATAACAATC
TCTACAATGCACTCCCCTACCATCGCTGTTGTGGATGGGATTCTTCGAGT
GTTTGATAGCGTTTTCGTTGATGATATTGGTAGCTGCTGGAAATAACAAC
AACAACAACAACAATTTGTTCACCTTCTTGAATACCAACATCCAGTACAC
CTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002159-exon-sc0000018-1575043694:826893..827172 | TCONS_00002159-exon-sc0000018-1575043694:826893..827172 | Clytia hemisphaerica | exon |
| TCONS_00002159-exon-sc0000018-1575043694:826588..826672 | TCONS_00002159-exon-sc0000018-1575043694:826588..826672 | Clytia hemisphaerica | exon |
| TCONS_00002159-exon-sc0000018-1575043694:826151..826447 | TCONS_00002159-exon-sc0000018-1575043694:826151..826447 | Clytia hemisphaerica | exon |
| TCONS_00002159-exon-sc0000018-1510915933:826893..827172 | TCONS_00002159-exon-sc0000018-1510915933:826893..827172 | Clytia hemisphaerica | exon |
| TCONS_00002159-exon-sc0000018-1510915933:826588..826672 | TCONS_00002159-exon-sc0000018-1510915933:826588..826672 | Clytia hemisphaerica | exon |
| TCONS_00002159-exon-sc0000018-1510915933:826151..826447 | TCONS_00002159-exon-sc0000018-1510915933:826151..826447 | Clytia hemisphaerica | exon |
| TCONS_00002159-exon-sc0000018-1491911889:826893..827172 | TCONS_00002159-exon-sc0000018-1491911889:826893..827172 | Clytia hemisphaerica | exon |
| TCONS_00002159-exon-sc0000018-1491911889:826588..826672 | TCONS_00002159-exon-sc0000018-1491911889:826588..826672 | Clytia hemisphaerica | exon |
| TCONS_00002159-exon-sc0000018-1491911889:826151..826447 | TCONS_00002159-exon-sc0000018-1491911889:826151..826447 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:826151..827172 - |
Blast
The following BLAST results are available for this feature:
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