TCONS_00002151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002151
Unique NameTCONS_00002151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002151 ID=TCONS_00002151|Name=TCONS_00002151|organism=Clytia hemisphaerica|type=transcript|length=953bp
GTATGAGCTTCAAAATAAGATTCGTTTCACATCTTATTCTGGAACCAAAG
ACTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTTTGGATTTGAC
GAGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTATCTTATGTCA
TCCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCCATTATGGATC
CTCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATTCTTAAACACC
AGAGCTATTCGTTTTAATATCGAAGgCGTGGATCGCAACGGCAAGTGGAG
GGATCACCCACAAACATATAACCTCATGGATGAAATGATGGAAGAAATTC
CTGGCAAAGATAATTATGGTGGGAATGTATCAGCAAGTTCTTTTGATTCT
ATTGCAATGAGTGCAAACCCTTCCAAAAGTGGACAACCATTAAACGGAGC
TTATTACCATCGACCCTATAAACTATCTAAAAAAGATGCCATGGGTACAG
ATTCAACGCAGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACAGT
CAAGAGAGAATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAAGT
GGAGACCAAAGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGACGC
CATTAGCTAAATGGAATCCTTATGATATCCAATACTCAGAGGACCCAAAg
GCCACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGGATCAAAG
AAACTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGCGAATCTG
ATGCTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAACTCAACA
GGTCACACGGTGAATACACAAGCTTCTGGTGTTCGAATCATGTCCCCAGA
GATTGCTGACATTGAAGGTATCATTAGACAACGATATCCCATCATGCCCA
TTN
Run BLAST on NCBI

transcript from alignment at sc0000018:628009..633374-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002151 ID=TCONS_00002151|Name=TCONS_00002151|organism=Clytia hemisphaerica|type=transcript|length=5366bp|location=Sequence derived from alignment at sc0000018:628009..633374- (Clytia hemisphaerica)
GTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTA
TGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGA
GCTTCAAAATAAGGTGCCAATANTGAAAATATTCAGTGAAGTTTCCTTTT
ACCTTTTACCAAAATTCGAACGTTCGAAATGGATTAAGCCTGATTTACAC
TTCAACTCAAAAACAAAAAACTAGAAAATTAATTAGCGGGAGGGGGAAGT
CTATTCGGGACCTTGAGTATCCCTTTGTTTGGGAGACCCAACCTTATCTT
CTCGCTGCAAATGCTGAAACCCCCCGGATTTACCAATTTTACCCCCCAAT
TTTAGGTTTAAAGCCCTCTGGAATTCTGAATTCTTGTTCAATTCTGCAAC
CCTCATGGGGGTATACGGTTTTATCTTTCAAAAGCCCTTTCGAGTGATCA
CCTTATTCAATTTCTACTTTTAACACAATTCTTGGTCAAATGGTATAAGA
GATTATAGTTGATTCCCTCTAATTCGATCTTCAGACAATGAATTTTCTTC
CCCAATAAAGATTCGAATTACGGAGAGTACTTTAAAAGATTTTCCAGTTG
AAGGGACCAATGTATTAATTAGCTCGAATTACAGAAACATTATGAATAGG
AGAGAGTTGACAGTATTCTCTTAATACATCGTTAACAACCTCGTGTCTAG
CATAATGTTCTTAAAATTTACATTAACCGCCTTAATGGATTGAGAATTTT
AGAATCGTTTAATGGACATAGGGCACTTCTCTCACTGGGCAATTTTTCTG
CTAATTATTCCATGCGGGATGGACAGTCCCCCGGGTTTATAATACGAGAG
CGAGCGTCCTGTGAGTAAGGATTTCTTATCAATATACATTGATGCTTCTG
AAAACCTTGTGGATATCGCAAACAAATGAAAAAAAATAACAATATTTCAC
AAGTTTACCCTAAGAATGCATAAGCTTCAATTCTGAACTTAGATATTTAC
TTATTAGCAATCTTTCCCTCATAACGTTGCCAATAAAAACTAAAAATACA
GTTGATTATTCTTAAGGATTGTTACAAAGCGCCGTTTCTTCCAAGATAAC
TTGACGACGGACATACATCAAAACAAACAGCGACATGCTATGAAAGGACC
GAAAATGCTGAGCCAAAAATGTGAATCATTCTGAAATCTCTGCAGCTAAA
TTTCCATTCGAAATTTCTTATAGATTCGTTTCACATCTTATTCTGGAACC
AAAGACTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTTTGGATT
TGACGAGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTATCTTAT
GTCATCCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCCATTATG
GATCCTCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATTCTTAAA
CACCAGAGCTATTCGTTTTAATATCGAAGGTATGAACAATATTATCATAT
ATCATAATGAAAAAAATGAAAAATAGGCTAAATTTAAGTCATCCAGAGTT
GCAACTCAGTAGGTACGAAACGTTAAATCAACGTCTATTTAACGTCCCTA
ACGTTCATAAAACGTTAAATGAACGTGAAAAAATGTTGTGTACCGGCTTG
GAAGATTATGAGCAATATAATTCAGTGGGGTTTTTAACTAACAGGGGTTC
TAAAAGGGTGGTGCCTTGAACATAGCATTCCATTTTTTTATATAATAGGC
GTGGATCGCAACGGCAAGTGGAGGGATCACCCACAAACATATAACCTCAT
GGATGAAATGATGGAAGAAATTCCTGGCAAAGATAATTATGGTGGGAATG
TATCAGCAAGTTCTTTTGATTCTATTGCAATGAGTGCAAACCCTTCCAAA
AGTGGACAACCATTAAACGGAGCTTATTACCATCGACCCTATAAACTATG
TAAGAATTGATCTTTTTTGTTTTTAAGTTTTAGTTAGTCTGTGACCACGC
AGACGGAAGCGACCCAAAGGCTCTTCTTTCGATAGCTAGCTACCCAAAGG
TAGGGGAGAGCGCCACTCTTTCTCCCTGGATTGTTCCACCTTCCCTTGAT
CCTTCCCTTAATTGCTGAGCATCAAGCAGAGAGGCGTCAAGTACAATGTA
GGGAATATTTGGTATGACCCAGCTGGGGATTGAACCTATATCCTTGCGCA
ACGTAGGCGGATGCTTTACCACTGTACTACGGTCACCTTTTTAGTTGTCT
GTAAACACACCTGAAAATCTACGGAAATTTCAAAATTAATTTCCGAACAC
TACATTATACACGTGAGGTACACTCTTGTGTAGAGAAGATTTTCAATAAA
ATTATTATCTTTGTTAAAGGGTGCATATCTGTGTGACATAGATAATAAGG
CTTTGTTGTAGCAAAAACCTTTTTACTGCATCGTCCTTATTATCTGACCA
TTTGGAAATCCACCTCCCAAGGATATGATGTAAAATTTCAATTTATTACG
AACCAGGTTAAAAAAATCAAGATATTAAAATCTGAATAACATATTCTAAG
GCTTGATGTTAGCAGAATTTTATTTGTTAGTTCGCTATAACTTTGATCCT
ATTTGCGCATGACTTCCTCTTTATCTAGCTTTAACCGAATCATACGAGGC
TATCTAGCACTAGAATATCTCTGGTAAATTCCCCGATCTTTTTTACAAAT
TTAAGCTTTAGAACACCCTGTGTCCAGCCCCACCGGAAAATTTCATTCCC
GTTGGGAAAATATCCAGGAATTTCAGCACCTCTGGAAAATTGACTTTGAT
TTCATCCCTATTCGAAATTCATGATTAAAAATTACACTCCAAAACCATCC
CCACTACATTTTTTAACCTTGGAGCAATAGAAATACTATCTTTATTGGGA
TTTCAATAGGAATTTTTTATCCCCACTGAGGAAAAAAGTTTCACCGAGGC
TGTTTAGAAAGTGGTGTTTTAGAAAAAGAAATTTCCGATGGAAAAAGGAG
AGAAAGTGTGCGCGATTGAAATCACTGTATCATTAATAATAAACACACTA
AAAACTAATAAACAATAAATACACCTTTTCGACCCTAAAAACGTCCCAGT
CTTTTTTTACTACAGTATTGTCTATAGGTGCGAAAAAAAAAGGATTGGGA
CGGTTTTGGGTAGTAAAACGGACCAAAAAATGCCCGCACAGCAATTGGTG
GCTACGGTCAAAAAGGTGTATTTCCATATAAATATTCTGAATTTCATTAT
TCAGAACTTCCATTTATTTCATCATATGATCGATACCTTTTATTCCCTCG
GTATAATGTAGCTAAAAAAGATGCCATGGGTACAGATTCAACGCAGCGTG
GTTATTCAGATCGTTTGTACATGGCCATGAACAGTCAAGAGAGAATCGCT
GGTCAAACTTACACAGATAAAGATGGAAACGAAGTGGAGACCAAAGTCAG
TTACGCTATCCCCATGGAGATCATTTACTTGACGCCATTAGCTAAATGGA
ATCCTTATGATATCCAATACTCAGAGGACCCAAAGGTAAAAATTCATTTT
TATTCATCCTTTTCTGATTCTGATACCACTTACGATAGACCTTTTCATAA
CTTACGTCAAGAACATCACTTGCCTCGTATTCAAACAATTACCATGGTGA
TTATGTCCCTTGAGACATTAATTGATCTTTTTATGAATAAAAAGTAGTTT
TATCAAAATCCGCTGGGAGTTAATCACCATGGCAATATTTTCAAAACGAG
GCAAGTGATGTTCGTAACGTAATTTGTCTATTGTATATATCACATCCATC
AGTCAAATCAAAAAGTGGTGTATAAGTGGCTTTGGGTACGAGATTGCATT
CCCCTGGGAGGGATACTGTAGGCTATGATTGTCAAAATCCGAGAAAAGAT
TGGGTTTTCGAGGCGAGTTTACAGTTACCTTATTACACGAATATTACTTG
GCAAGTATTCAACGGCATCAATAAATAAATAAATTTTTGTTGCTTCTTGC
CTGTGACCCATCCAAATATTCAAGCTTTAATATTCAACGGCCTTGAAATT
AACACAATTTAAAATTGTTTTCTTCATTCATTCATCACCAGGCCACCGGG
TCAGGCAGCAAAGGCAATCCATACAGTCACTCGGATCAAAGAAACTTTTT
CCACACTCCTGCATCCTTCTTCACTGGTGTTGGCGAATCTGATGCTGCTG
ATACTTCTAAAACTGGTGGTGTATGGATCAAGAACTCAACAGGTACGAAT
AAATTCACATTTTAAGTCCAAACGTGTTGTTATTGACCAAACTCGTTCCC
GGTCCCTTAGTTCGCTTTTAACTAATCTCGGTAGTGCTCACGAAAGTACC
GACGCCCATCTGCCGTATGTATCACAGTCACTGTGAACATAAAATGTGAT
AGCGAGCCGAGGTTAATTAATCAGAGACTAAAAAGTGACAACTGGTACAA
GATCTTAAACCAATACCTAACCCTATTCTAGGGGCGGTTCAAAACTAGGG
GGGGGGCTGACCACCCCTTAACTTTTAATCTGGTGGGTCTTTTCGGATGA
AATTTGGCACACAAGATCCTTGTCACATAAGTTAACTTTTGACAGGAAGT
TTTTTTGACGATGTGACTCATCATGCCCAAAATGAGCAAAAACCGAAAAT
TTCCTTTGATCTTATAACTAGCTATTGTGATTTAACAAAGGCACTAAGAA
CAATAAACGAGAATGCTTTTTCAAAACAATGAAAAATTAAATTGAATCTC
GTCAATATATGAAGTGAAGGTAGAGAGTCTACCATCATGTTTCCCTAACA
CCCTGCCGGTTCTTGGGATTCGAACACAGCCCATTGCGGTGTAAGTTCGT
GATCGAAATGTGCTTCCAGGTAGGGTTTAGGGAAATATTGTGATAGACTC
TCTACCTTCACTTATATATCACTCTCTCTCTCTCTCTCACTCTGGCTGAT
AATCGAAATGAGCTTAGTAAAGCTCAAATTGTAGATGTAGAACGATAAAC
TCGGTAGACATTTTATCATTAACATAATTGTTAACTAAATTTAGAATAAT
TTAACTCTGGCAATGGAATCTTGTTTTTGAGAATCTTGAGTGGAAGTTCT
TTCATGAAATACAGATTTTAGCTCTTGAAGGAGCTGAAAGAAAGTGCTGT
AATCGTAATGAGTATTCATTGTCCGTTTGGAAATTCAGGGTCTTAATTAT
CACAATTTTTTTCAATGCATTTTGTCATAGTTACCTCAAAAACTGTTATT
TATTCTTTAAACAGGTCACACGGTGAATACACAAGCTTCTGGTGTTCGAA
TCATGTCCCCAGAGATTGCTGACATTGAAGGTATCATTAGACAACGATAT
CCCATCATGCCCATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001122XLOC_001122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002151-exon-sc0000018-1575043694:633356..633374TCONS_00002151-exon-sc0000018-1575043694:633356..633374Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1575043694:631896..632151TCONS_00002151-exon-sc0000018-1575043694:631896..632151Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1575043694:631426..631626TCONS_00002151-exon-sc0000018-1575043694:631426..631626Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1575043694:629840..630063TCONS_00002151-exon-sc0000018-1575043694:629840..630063Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1575043694:629133..629283TCONS_00002151-exon-sc0000018-1575043694:629133..629283Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1575043694:628009..628110TCONS_00002151-exon-sc0000018-1575043694:628009..628110Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1510915933:633356..633374TCONS_00002151-exon-sc0000018-1510915933:633356..633374Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1510915933:631896..632151TCONS_00002151-exon-sc0000018-1510915933:631896..632151Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1510915933:631426..631626TCONS_00002151-exon-sc0000018-1510915933:631426..631626Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1510915933:629840..630063TCONS_00002151-exon-sc0000018-1510915933:629840..630063Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1510915933:629133..629283TCONS_00002151-exon-sc0000018-1510915933:629133..629283Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1510915933:628009..628110TCONS_00002151-exon-sc0000018-1510915933:628009..628110Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1491911889:633356..633374TCONS_00002151-exon-sc0000018-1491911889:633356..633374Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1491911889:631896..632151TCONS_00002151-exon-sc0000018-1491911889:631896..632151Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1491911889:631426..631626TCONS_00002151-exon-sc0000018-1491911889:631426..631626Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1491911889:629840..630063TCONS_00002151-exon-sc0000018-1491911889:629840..630063Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1491911889:629133..629283TCONS_00002151-exon-sc0000018-1491911889:629133..629283Clytia hemisphaericaexon
TCONS_00002151-exon-sc0000018-1491911889:628009..628110TCONS_00002151-exon-sc0000018-1491911889:628009..628110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:628009..633374 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0428781	0.0511539	0	0	0	1.15537e-08	0	0	0	0	0	0	0	0	0	0	0	0.0214755	0	0	0	0	0.00669321	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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