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TCONS_00002132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002132
Unique NameTCONS_00002132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002132 ID=TCONS_00002132|Name=TCONS_00002132|organism=Clytia hemisphaerica|type=transcript|length=1608bp
Gccaactgcatttctttcattatttatcattataaattcatggtatcatt
TAGAGCTAAgaacgaaaaaaaataaaaaaaatttaccgaACAAgtgacaa
aacaaaaaaatatgacaGATTTTATGACTGGCAGCAATTAAGAAATTCAG
ATCAGAGGATTAAATCAGAATCATGCTACCTGCGAGTGTGAAATAGGTAC
CTTGGTGACGGTGCCCCATTTTGCTTAAACagCTTCGTTTCGGAATAAAC
CATGTGTGATGCCGAGAGCGCCACCAGATACAAATCGGATGAAATTATCT
CCCACTAGTGGACCCATGGCGTATAACGACTTCCGGCCGCGGCATTCATA
CGTCAAAAGGTCAGTGTCTAaacagtttgtttttatattaaATTCTTCCT
CTGGATCCTCGCGTAGTAAATGCTCCTCTTTGATGAAGTCCAGATTCGGT
TTTGATCCAACATGGATGATGACTCGGCTCACGTGAACTTTGAACGAGGC
ACCGCCCTTTTTACCACATGGCTCAATAAGTACTTCCTTATTGGGTAAGA
TTTCGGCCAATCGGTGTTGAGGAAGTGGCGTGTAAAATTCACATTTTGAT
TTGAGCTGTATCAGcgattttaatttcaaatagtCTGCGTAGGCAGACGA
TAATTGGTTTAGAACGAGATTAGGGTCTTTAGGCGAACGTCTGAACACGT
GTATGACTGGTATCTGTCGTGAGATGAGGTAAAGGACTGCGTCTGCTGCA
ACTAGCCCACATCCTACTACAACCACAGGGCATTTGTGTGTCTGGAGTCG
ATCGAAATCTGGGAAGTGGTGATGTACGAAGGTGAAGTCTTCACCAGGGA
TCTCGAGTTTGCGTGGATTATTGAAAGCTCCGGTTGCCATAACAATGTTG
TCCGCTTTCACGGTATACGTTTCACCTGTTTGTTGGTCTGTATATTGAAC
GCCTTCCACCGTCCATTGTGACGTGTTGGATAAGCTCTGTGAGATGGATT
TGACGTAAACGTTATCAACGAAAAATGATGATAAGCCCATATATTTGACA
TAGTCGGAATAATAAAGCCCTATATAATAAGGGTTTGTACGCTCTGGATG
TACACCACCGACGCTGGGAACTTTTGGTAGATTACCAAGACTCAATTGTT
TCTGTTCATACCATTCATTGAATGTATATCCAGGTAATTCCAACCAGTTT
GCCAAACTAACAGTCAATTGTGAGTTAATCATATTATGCCATGAACCACC
TGGTGGACCGAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAAT
ATTTCCATTCGATAACCGATTCGNCGGTGGACCAAATCCAAGAACAACAT
GTCGGACTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTCGGGT
TTGGTCAACATATCAGCATTTGGATGGTATAAATGGTCGAAGAGAATTGA
TACAGGATTCATGGTTCGTGAATCGAACAAACCTTCGCTCAGCCATTGTA
AATCCTGCGGAAATGAAGAGAATCAAATTCTTTATTACATAGAAAAAGAC
AACTACAGATGAACATTCTTCAAGTGatataaaaatcaaatatgAATTTA
AAAAGTTC
Run BLAST on NCBI

transcript from alignment at sc0000018:321428..326364-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002132 ID=TCONS_00002132|Name=TCONS_00002132|organism=Clytia hemisphaerica|type=transcript|length=4937bp|location=Sequence derived from alignment at sc0000018:321428..326364- (Clytia hemisphaerica)
GCCAACTGCATTTCTTTCATTATTTATCATTATAAATTCATGGTATCATT TAGAGCTAAGAACGAAAAAAAATAAAAAAAATTTACCGAACAAGTGACAA AACAAAAAAATATGACAGATTTTATGGTATGGTATATTTTGTTTTATTTA AAGTAATTTACACTAAGTTTAAGCATATAAACGTTTTTCTAACCTATAAA AACACACTATTGGAATCCCGACATTTTATGACTAGCTCCGTATTACAAAC AACGACTTTTACATTATATACCCTGGGTCAAGCTATATCTGCCATTATTG ATCGGAGTTTTCAGAAAAATAGTACCCTATATGGTAGCACTACTCGATGT GGGTCACTTTTTCACTGTCATTGAGTAGTGGTACCCTTAGGGTACCATTT TCGAAGTCTCCCTGTTCTTCCCAACTAGTATTTTTTCCAAGAAAAAACTG TGACTGAATTCTCAACCCTTCCCCATGACTTGTGTTAGTAAAAATAGGTA CTCAGTAGTTCAACCTCTTAGACGATCTTATCACTAATGTAAAAAAGGGA ATAATTAGTTCCAATAAAGGTAATATGTTAACAATTCTTTTCATCTTTCA GACTGGCAGCAATTAAGAAATTCAGATCAGAGGATTAAATCAGAATCATG CTACCTGCGAGTGTGAAATAGGTACCTTGGTGACGGTGCCCCATTTTGCT TAAACAGGTTAAAATTTGAAATACCCTTTACTTTATACCCTCAATATGAC AATAATACCCTTTCGAAAAAGTCTCAAAATCATAATCTGATTGAACGTTT TTTTTTCTCTAGTACTTCCTAGTACTTTGGATGAGGGTCAAGTATTCTTA ACTTATTAACACTTGACTTTTTTACAAACATGAGAAATGATCAATTTGAG AGTTTTGGACTTTTGAGTGAACATTTGGGTTAAAATTACATTTCTTCCTC AAAGCTTTCAATTTATCTCTAACAAAGAAAGCAGTTTTCTTCTGTTAACC AAATACGAAATAACTTATCAAATAACTTATTCTTATCAAATTCTGTGAAA TTCACACTAGAGGGTATTCTTAGGGTATTCTAAAGATTTGGCCAATTTTC ACCCTGATATTCTTATAGAAGATATTCTTATAAAAAAAGCGTGAACCAGC CACGTGTGGTCGAGTCCCACTAAAGATGCTACAGATCCTAAAGGTTAGCC TATTACCTAATGGACGGGGTTGGTGGGATTAGCAGGGTAGGTAGAAAAAT ACAATAAGACTAGGGAGGGGAGTTTTCCTTAGTGGAAAGCTTGTAAAAGG CGACTAACAAAAAAAAACTACTTCAAAATTTCGCTGCTCAAATAAAAAAG TGAACCAAGGTTTAGCATTTTGCTCTTTAAGTTCCGTTTTCTTTTTACTT TCTGTTATTTTACCAGGTTAAATTTTCTTGTAGTTGTTGTTTTTTAATTT TCTTTTGGGCTGAAATGGAATGAAATATGAGATTGGATTAAAGAAAAAAA AACTAATTAGTTGAATAGTGCTTAAAACCAGAACCTGTTACTCGAACTTT CCGAACCGACTTTTCACTCAAACTTATTGAACCCCGGAGGGGCACTCGAT TTCTAAACGGCGGCATGTGCCGCCGAAAATTGCCTTTCAAAATCGGACCC TTATGCAGTTCTTGAGCAGTGAAAAGGTACCCTTACAGTGCATTTTACCG AACGTTTCTGACCCTTACAGTGCAGCTTGATTTCATATCTTATTTTGCTG AAGCCATCTGAAAATGAGTCTGAGATGTCGACACAATAATGTGAATTAAA ACTGTAAAGATACACCAGATTTTTACTGTCAGACTTGCAATTAAGTAGTT CTCGAACACACCCTTACAGTGTATCCAGCTAAAAGAACACCCTTGTAGTG CACTCTATCAAAGTACACCCTTACAGTGCATTTCAAGGGTCTCGAAAAAT CGAACCATATGAGTGCCCCTGTTCGAGTAATAAGGTCTGAAAAATTTGAT TTTGGAAGGTAGAAACCAAATGTCAACTCATTAAGAAAATACAAGCTTTT TTTCGTCAACCAATATATATTTTCTGTTTTTTAAAATTTTCAATTTTCGT CAAAAAAGTGATGTTACTACATAATACAATGTCGTCATTAAAAAAGAAAA GAAAAAGAAAAAGAAACTGTTTATGAAAAATCCTCTTCAAAAAGTATGTT CGCTTTAAGCTTGAGGTACCTTTGAACTTTATGTTTGTTCGTAATATAAG AGACATTATATTCCGACTAGGCTTAAGGGGTTCTTATCCAACGCTTGCGC CGAAATTGAGCATACAGTGTGTCCCAAAAAAGTAAACAAATTATTATATT AAAGTCATCATTATATATGCGAAGTTTTATGACTTAGTTTACTTGTTTAC TTTCAATCTCCAAAAATTAATTTAGTCATCTTGGGAATTGAATATCTAAT GATTGAACAAAGAATTCTAATCTTCAATTATTCCATTCCCCAGTTTAGAT GACGAGTTTTGTGTTTTGAGGATTTTCCTTTATATAAAAATATGCCCGCT TTTTTTTGGGACATACTGTACATTCTTGTTCTCACTCGTTATAGAGAGAC GAAAGCTTTCCAATAAAATTTAAGCTTCTGCGAATATTACTTTTTGAAGG ATCTCCTGTTTTTATAGTTTTTAAAATTCAGATACCATAATATCGAAAAA TATTCATGCACATTTCTATTTACAATACAATAGTTCTATTTATACTGAGA CGATTAATTTGTCTGAGACGAGCAATTTAGAAAATGAGCATTATGGAGGA GTGTACTTTTTATTCATGTTTCAATAAATAGGATTTCCTCCACAGATCAC ATTTTACAAACTACTCGTCTCAGACGATTTTTCCGTCTCAGTATAAATGG AACTAATGTTTAAAAAAAGTGTAAAATTGGTTGTTCTTGTTTAATAAATT GGGAATAAATTACTGCGTGTCTTTAACTTAATAATATAGCTCATAATTTC TACGACTACTAATTTTAATAATACCTTGAAATTAACTCATTTATTTTTCT ACAGACTGTGCGAGCATTTCAAATAACAATAATGGTGTCATTTTCAATGT AATAACAGATAGCTATTAACTGATAACAGATTTTCAAAGTATGAAAAAGT AAGTTTGTTCAATCCTTATTACCATACTGCATTAATATCCCAACTTCGTG TTTCAAATCCCCATATGCCCTAACCTTTATATGTAAACCCCACCTATCGC CTCCAATTTTAAGGAGACCCAAAATTTTCACTTTTAGATTTAAAGATTAT ATCCAAAAAGATATATTTATTTACATCTATCTATCTACATATATTGAAAG TTCTCTAACTACTTAGCTCATTTCCCCTACAGCTTAAGAGAGCCTGTCTA CAGAGCATCCTCGAAAGAAATGAGAACCTGTTTTTAAAGTATCCTTTAAT CACAAAGACCAGATATTTCAACACGTTTTTTACATCAAAAAGGTGAACCT GTATTTCAACCATCCTTGGAAGAAAAATGACCAGCTGTTTTTCACACATC TTCATTTTCAGCTTCGTTTCGGAATAAACCATGTGTGATGCCGAGAGCGC CACCAGATACAAATCGGATGAAATTATCTCCCACTAGTGGACCCATGGCG TATAACGACTTCCGGCCGCGGCATTCATACGTCAAAAGGTCAGTGTCTAA ACAGTTTGTTTTTATATTAAATTCTTCCTCTGGATCCTCGCGTAGTAAAT GCTCCTCTTTGATGAAGTCCAGATTCGGTTTTGATCCAACATGGATGATG ACTCGGCTCACGTGAACTTTGAACGAGGCACCGCCCTTTTTACCACATGG CTCAATAAGTACTTCCTTATTGGGTAAGATTTCGGCCAATCGGTGTTGAG GAAGTGGCGTGTAAAATTCACATTTTGATTTGAGCTGTATCAGCGATTTT AATTTCAAATAGTCTGCGTAGGCAGACGATAATTGGTTTAGAACGAGATT AGGGTCTTTAGGCGAACGTCTGAACACGTGTATGACTGGTATCTGTCGTG AGATGAGGTAAAGGACTGCGTCTGCTGCAACTAGCCCACATCCTACTACA ACCACAGGGCATTTGTGTGTCTGGAGTCGATCGAAATCTGGGAAGTGGTG ATGTACGAAGGTGAAGTCTTCACCAGGGATCTCGAGTTTGCGTGGATTAT TGAAAGCTCCGGTTGCCATAACAATGTTGTCCGCTTTCACGGTATACGTT TCACCTGTTTGTTGGTCTGTATATTGAACGCCTTCCACCGTCCATTGTGA CGTGTTGGATAAGCTCTGTGAGATGGATTTGACGTAAACGTTATCAACGA AAAATGATGATAAGCCCATATATTTGACATAGTCGGAATAATAAAGCCCT ATATAATAAGGGTTTGTACGCTCTGGATGTACACCACCGACGCTGGGAAC TTTTGGTAGATTACCAAGACTCAATTGTTTCTGTTCATACCATTCATTGA ATGTATATCCAGGTAATTCCAACCAGTTTGCCAAACTAACAGTCAATTGT GAGTTAATCATATTATGCCATGAACCACCTGGTGGACCGAATCCAAGAAC AACATGTCGGACTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATT CGNCGGTGGACCAAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTA AATATTTCCATTCGATAACCGATTCGGGTTTGGTCAACATATCAGCATTT GGATGGTATAAATGGTCGAAGAGAATTGATACAGGATTCATGGTTCGTGA ATCGAACAAACCTTCGCTCAGCCATTGTAAATCCTGCGGAAATGAAGAGA ATCAAATTCTTTATTACATAGAAAAAGACAACTACAGATGAACATTCTTC AAGTGATATAAAAATCAAATATGAATTTAAAAAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001111XLOC_001111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002132-exon-sc0000018-1575043694:326239..326364TCONS_00002132-exon-sc0000018-1575043694:326239..326364Clytia hemisphaericaexon
TCONS_00002132-exon-sc0000018-1575043694:325658..325763TCONS_00002132-exon-sc0000018-1575043694:325658..325763Clytia hemisphaericaexon
TCONS_00002132-exon-sc0000018-1575043694:321428..322803TCONS_00002132-exon-sc0000018-1575043694:321428..322803Clytia hemisphaericaexon
TCONS_00002132-exon-sc0000018-1510915933:326239..326364TCONS_00002132-exon-sc0000018-1510915933:326239..326364Clytia hemisphaericaexon
TCONS_00002132-exon-sc0000018-1510915933:325658..325763TCONS_00002132-exon-sc0000018-1510915933:325658..325763Clytia hemisphaericaexon
TCONS_00002132-exon-sc0000018-1510915933:321428..322803TCONS_00002132-exon-sc0000018-1510915933:321428..322803Clytia hemisphaericaexon
TCONS_00002132-exon-sc0000018-1491911889:326239..326364TCONS_00002132-exon-sc0000018-1491911889:326239..326364Clytia hemisphaericaexon
TCONS_00002132-exon-sc0000018-1491911889:325658..325763TCONS_00002132-exon-sc0000018-1491911889:325658..325763Clytia hemisphaericaexon
TCONS_00002132-exon-sc0000018-1491911889:321428..322803TCONS_00002132-exon-sc0000018-1491911889:321428..322803Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:321428..326364 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0840019 0.161989 0.094217 0 0 0.43107 1.22855 0.589024 2.25869 1.71009 1.15057 0.216638 0.202181 0.321866 0.210682 0.716019 0.460199 2.5414 0.395593 0.989351 0.436699 0.671828 0.364299 0 0.209212 0 0 0 0.922021
Blast
BLAST of TCONS_00002132 vs. Swiss-Prot (Human)
Match: OSGI2 (Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens GN=OSGIN2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.882e-67
Identity = 142/396 (35.86%), Postives = 199/396 (50.25%), Query Frame = -2
Query:  246 SVIEWKYLPENEVRHVVLGFGPPGGSWHNMINSQLTVSLANWLELPGYTFNEWYEQKQLSLGNLPKVPSVGGVHPERTNPYYIGLYYSDYVKYMGLSSFFVDNVYVKSISQ----------------------SLSN--TSQWTVEGVQYTDQQTGETYTVKADNIVMATGAFNNPRKLEIPGEDFTFVHHHFPDFD------RLQTHKCPVVVVGCGLVAADAVLYLISRQIPVIHVFRRSPKDPNLVLNQL-SSAYADYXX------XXXXXXXXXKCEFYTPLPQHRLAEILPNKEVLIEPCGKKGGASFKVHVSRVIIHVGSKPNLDFIKXXXXXXXXXXXE-FNIKTNCLDTDLLTYECRGRKSLYAMGPLVGDNFIRFVSGGALGITHGL 1319
            SV+ WK    + + HVVLG GPPGG+WHNM  S LT+S  +W+ELPG  F +W   K+ SL              +R  P  I  YY  YVK MGL   F +N Y+ S+S+                        SN     W + G Q     +   + + A+N+ +ATG  ++P  LEI GEDF FV H  P+F       +L+    PV++VG GL AADAVL   +  IPVIHVFRR   DP+L+  QL    Y +Y K       +S     +    YT  P+HR+     + + +++      G      +S  ++ +GS PNL F+K++         +    K N ++ D  TYEC    +L+A+GPLVGDNF+RF+ GGALG+T  L
Sbjct:  105 SVLHWKLEQHHYIPHVVLGKGPPGGAWHNMEGSMLTISFGSWMELPGLKFKDWVSSKRRSLKG------------DRVMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQDDDDIQDRDISTKHLQIEKSNFIKRNWEIRGYQRIADGSHVPFCLFAENVALATGTLDSPAHLEIEGEDFPFVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEHRVLSFKSDMKCVLQSVS---GLKKIFKLSAAVVLIGSHPNLSFLKDQGCYLGHKSSQPITCKGNPVEIDTYTYECIKEANLFALGPLVGDNFVRFLKGGALGVTRCL 485          
The following BLAST results are available for this feature:
BLAST of TCONS_00002132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OSGI21.882e-6735.86Oxidative stress-induced growth inhibitor 2 OS=Hom... [more]
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