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TCONS_00002131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002131
Unique NameTCONS_00002131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002131 ID=TCONS_00002131|Name=TCONS_00002131|organism=Clytia hemisphaerica|type=transcript|length=1979bp
ATTAAGAAATTCAGATCAGAGGATTAAATCAGAATCATGCTACCTGCGAG
TGTGAAATAGGTACCTTGGTGACGGTGCCCCATTTTGCTTAAACagACTG
TGCGAGCAtttcaaataacaataatggtgtCATTTTCAATGTAATAACAG
ATAGCTATTAACTGATAACAGATTTTCAAAGTATGAAAAAGTAAGTTTGT
TCAATCCTTATTACCATACTGCATTAATATCCCAACTTCGTGTTTCAAAT
CCCCATATGCCCTAACCTTTATATGTAAACCCCACCTATCGCCTCCAATT
TTAAGGAGAcccaaaattttcacttttagaTTTAAAGATTATATCCAAAA
AGATATATTTATTTACATCTATCTATCTACATATATTGAAAGTTCTCTAA
CTACTTAGCTCATTTCCCCTACAGCTTAAGAGAGCCTGTCTACAGAGCAT
CCTCGAAAGAAATGAGAACCTGTTTTTAAAGTATCCTTTAATCACAAAGA
CCAGATATTTCAACAcgttttttacatcaaaaaggTGAACCTGTATTTCA
ACCATCCTTGGAAGAAAAATGACCAGCTGTTTTTCACACATCTTCATTTT
CAGCTTCGTTTCGGAATAAACCATGTGTGATGCCGAGAGCGCCACCAGAT
ACAAATCGGATGAAATTATCTCCCACTAGTGGACCCATGGCGTATAACGA
CTTCCGGCCGCGGCATTCATACGTCAAAAGGTCAGTGTCTAaacagtttg
tttttatattaaATTCTTCCTCTGGATCCTCGCGTAGTAAATGCTCCTCT
TTGATGAAGTCCAGATTCGGTTTTGATCCAACATGGATGATGACTCGGCT
CACGTGAACTTTGAACGAGGCACCGCCCTTTTTACCACATGGCTCAATAA
GTACTTCCTTATTGGGTAAGATTTCGGCCAATCGGTGTTGAGGAAGTGGC
GTGTAAAATTCACATTTTGATTTGAGCTGTATCAGcgattttaatttcaa
atagtCTGCGTAGGCAGACGATAATTGGTTTAGAACGAGATTAGGGTCTT
TAGGCGAACGTCTGAACACGTGTATGACTGGTATCTGTCGTGAGATGAGG
TAAAGGACTGCGTCTGCTGCAACTAGCCCACATCCTACTACAACCACAGG
GCATTTGTGTGTCTGGAGTCGATCGAAATCTGGGAAGTGGTGATGTACGA
AGGTGAAGTCTTCACCAGGGATCTCGAGTTTGCGTGGATTATTGAAAGCT
CCGGTTGCCATAACAATGTTGTCCGCTTTCACGGTATACGTTTCACCTGT
TTGTTGGTCTGTATATTGAACGCCTTCCACCGTCCATTGTGACGTGTTGG
ATAAGCTCTGTGAGATGGATTTGACGTAAACGTTATCAACGAAAAATGAT
GATAAGCCCATATATTTGACATAGTCGGAATAATAAAGCCCTATATAATA
AGGGTTTGTACGCTCTGGATGTACACCACCGACGCTGGGAACTTTTGGTA
GATTACCAAGACTCAATTGTTTCTGTTCATACCATTCATTGAATGTATAT
CCAGGTAATTCCAACCAGTTTGCCAAACTAACAGTCAATTGTGAGTTAAT
CATATTATGCCATGAACCACCTGGTGGACCGAATCCAAGAACAACATGTC
GGACTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTCGNCGGTG
GACCAAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAATATTTC
CATTCGATAACCGATTCGGGTTTGGTCAACATATCAGCATTTGGATGGTA
TAAATGGTCGAAGAGAATTGATACAGGATTCATGGTTCGTGAATCGAACA
AACCTTCGCTCAGCCATTGTAAATCCTGCGGAAATGAAGAGAATCAAATT
CTTTATTACATAGAAAAAGACAACTACAGATGAACATTCTTCAAGTGata
taaaaatcaaatatgAATTTAAAAAGTTC
Run BLAST on NCBI

transcript from alignment at sc0000018:321428..325753-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002131 ID=TCONS_00002131|Name=TCONS_00002131|organism=Clytia hemisphaerica|type=transcript|length=4326bp|location=Sequence derived from alignment at sc0000018:321428..325753- (Clytia hemisphaerica)
ATTAAGAAATTCAGATCAGAGGATTAAATCAGAATCATGCTACCTGCGAG TGTGAAATAGGTACCTTGGTGACGGTGCCCCATTTTGCTTAAACAGGTTA AAATTTGAAATACCCTTTACTTTATACCCTCAATATGACAATAATACCCT TTCGAAAAAGTCTCAAAATCATAATCTGATTGAACGTTTTTTTTTCTCTA GTACTTCCTAGTACTTTGGATGAGGGTCAAGTATTCTTAACTTATTAACA CTTGACTTTTTTACAAACATGAGAAATGATCAATTTGAGAGTTTTGGACT TTTGAGTGAACATTTGGGTTAAAATTACATTTCTTCCTCAAAGCTTTCAA TTTATCTCTAACAAAGAAAGCAGTTTTCTTCTGTTAACCAAATACGAAAT AACTTATCAAATAACTTATTCTTATCAAATTCTGTGAAATTCACACTAGA GGGTATTCTTAGGGTATTCTAAAGATTTGGCCAATTTTCACCCTGATATT CTTATAGAAGATATTCTTATAAAAAAAGCGTGAACCAGCCACGTGTGGTC GAGTCCCACTAAAGATGCTACAGATCCTAAAGGTTAGCCTATTACCTAAT GGACGGGGTTGGTGGGATTAGCAGGGTAGGTAGAAAAATACAATAAGACT AGGGAGGGGAGTTTTCCTTAGTGGAAAGCTTGTAAAAGGCGACTAACAAA AAAAAACTACTTCAAAATTTCGCTGCTCAAATAAAAAAGTGAACCAAGGT TTAGCATTTTGCTCTTTAAGTTCCGTTTTCTTTTTACTTTCTGTTATTTT ACCAGGTTAAATTTTCTTGTAGTTGTTGTTTTTTAATTTTCTTTTGGGCT GAAATGGAATGAAATATGAGATTGGATTAAAGAAAAAAAAACTAATTAGT TGAATAGTGCTTAAAACCAGAACCTGTTACTCGAACTTTCCGAACCGACT TTTCACTCAAACTTATTGAACCCCGGAGGGGCACTCGATTTCTAAACGGC GGCATGTGCCGCCGAAAATTGCCTTTCAAAATCGGACCCTTATGCAGTTC TTGAGCAGTGAAAAGGTACCCTTACAGTGCATTTTACCGAACGTTTCTGA CCCTTACAGTGCAGCTTGATTTCATATCTTATTTTGCTGAAGCCATCTGA AAATGAGTCTGAGATGTCGACACAATAATGTGAATTAAAACTGTAAAGAT ACACCAGATTTTTACTGTCAGACTTGCAATTAAGTAGTTCTCGAACACAC CCTTACAGTGTATCCAGCTAAAAGAACACCCTTGTAGTGCACTCTATCAA AGTACACCCTTACAGTGCATTTCAAGGGTCTCGAAAAATCGAACCATATG AGTGCCCCTGTTCGAGTAATAAGGTCTGAAAAATTTGATTTTGGAAGGTA GAAACCAAATGTCAACTCATTAAGAAAATACAAGCTTTTTTTCGTCAACC AATATATATTTTCTGTTTTTTAAAATTTTCAATTTTCGTCAAAAAAGTGA TGTTACTACATAATACAATGTCGTCATTAAAAAAGAAAAGAAAAAGAAAA AGAAACTGTTTATGAAAAATCCTCTTCAAAAAGTATGTTCGCTTTAAGCT TGAGGTACCTTTGAACTTTATGTTTGTTCGTAATATAAGAGACATTATAT TCCGACTAGGCTTAAGGGGTTCTTATCCAACGCTTGCGCCGAAATTGAGC ATACAGTGTGTCCCAAAAAAGTAAACAAATTATTATATTAAAGTCATCAT TATATATGCGAAGTTTTATGACTTAGTTTACTTGTTTACTTTCAATCTCC AAAAATTAATTTAGTCATCTTGGGAATTGAATATCTAATGATTGAACAAA GAATTCTAATCTTCAATTATTCCATTCCCCAGTTTAGATGACGAGTTTTG TGTTTTGAGGATTTTCCTTTATATAAAAATATGCCCGCTTTTTTTTGGGA CATACTGTACATTCTTGTTCTCACTCGTTATAGAGAGACGAAAGCTTTCC AATAAAATTTAAGCTTCTGCGAATATTACTTTTTGAAGGATCTCCTGTTT TTATAGTTTTTAAAATTCAGATACCATAATATCGAAAAATATTCATGCAC ATTTCTATTTACAATACAATAGTTCTATTTATACTGAGACGATTAATTTG TCTGAGACGAGCAATTTAGAAAATGAGCATTATGGAGGAGTGTACTTTTT ATTCATGTTTCAATAAATAGGATTTCCTCCACAGATCACATTTTACAAAC TACTCGTCTCAGACGATTTTTCCGTCTCAGTATAAATGGAACTAATGTTT AAAAAAAGTGTAAAATTGGTTGTTCTTGTTTAATAAATTGGGAATAAATT ACTGCGTGTCTTTAACTTAATAATATAGCTCATAATTTCTACGACTACTA ATTTTAATAATACCTTGAAATTAACTCATTTATTTTTCTACAGACTGTGC GAGCATTTCAAATAACAATAATGGTGTCATTTTCAATGTAATAACAGATA GCTATTAACTGATAACAGATTTTCAAAGTATGAAAAAGTAAGTTTGTTCA ATCCTTATTACCATACTGCATTAATATCCCAACTTCGTGTTTCAAATCCC CATATGCCCTAACCTTTATATGTAAACCCCACCTATCGCCTCCAATTTTA AGGAGACCCAAAATTTTCACTTTTAGATTTAAAGATTATATCCAAAAAGA TATATTTATTTACATCTATCTATCTACATATATTGAAAGTTCTCTAACTA CTTAGCTCATTTCCCCTACAGCTTAAGAGAGCCTGTCTACAGAGCATCCT CGAAAGAAATGAGAACCTGTTTTTAAAGTATCCTTTAATCACAAAGACCA GATATTTCAACACGTTTTTTACATCAAAAAGGTGAACCTGTATTTCAACC ATCCTTGGAAGAAAAATGACCAGCTGTTTTTCACACATCTTCATTTTCAG CTTCGTTTCGGAATAAACCATGTGTGATGCCGAGAGCGCCACCAGATACA AATCGGATGAAATTATCTCCCACTAGTGGACCCATGGCGTATAACGACTT CCGGCCGCGGCATTCATACGTCAAAAGGTCAGTGTCTAAACAGTTTGTTT TTATATTAAATTCTTCCTCTGGATCCTCGCGTAGTAAATGCTCCTCTTTG ATGAAGTCCAGATTCGGTTTTGATCCAACATGGATGATGACTCGGCTCAC GTGAACTTTGAACGAGGCACCGCCCTTTTTACCACATGGCTCAATAAGTA CTTCCTTATTGGGTAAGATTTCGGCCAATCGGTGTTGAGGAAGTGGCGTG TAAAATTCACATTTTGATTTGAGCTGTATCAGCGATTTTAATTTCAAATA GTCTGCGTAGGCAGACGATAATTGGTTTAGAACGAGATTAGGGTCTTTAG GCGAACGTCTGAACACGTGTATGACTGGTATCTGTCGTGAGATGAGGTAA AGGACTGCGTCTGCTGCAACTAGCCCACATCCTACTACAACCACAGGGCA TTTGTGTGTCTGGAGTCGATCGAAATCTGGGAAGTGGTGATGTACGAAGG TGAAGTCTTCACCAGGGATCTCGAGTTTGCGTGGATTATTGAAAGCTCCG GTTGCCATAACAATGTTGTCCGCTTTCACGGTATACGTTTCACCTGTTTG TTGGTCTGTATATTGAACGCCTTCCACCGTCCATTGTGACGTGTTGGATA AGCTCTGTGAGATGGATTTGACGTAAACGTTATCAACGAAAAATGATGAT AAGCCCATATATTTGACATAGTCGGAATAATAAAGCCCTATATAATAAGG GTTTGTACGCTCTGGATGTACACCACCGACGCTGGGAACTTTTGGTAGAT TACCAAGACTCAATTGTTTCTGTTCATACCATTCATTGAATGTATATCCA GGTAATTCCAACCAGTTTGCCAAACTAACAGTCAATTGTGAGTTAATCAT ATTATGCCATGAACCACCTGGTGGACCGAATCCAAGAACAACATGTCGGA CTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTCGNCGGTGGAC CAAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAATATTTCCAT TCGATAACCGATTCGGGTTTGGTCAACATATCAGCATTTGGATGGTATAA ATGGTCGAAGAGAATTGATACAGGATTCATGGTTCGTGAATCGAACAAAC CTTCGCTCAGCCATTGTAAATCCTGCGGAAATGAAGAGAATCAAATTCTT TATTACATAGAAAAAGACAACTACAGATGAACATTCTTCAAGTGATATAA AAATCAAATATGAATTTAAAAAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001111XLOC_001111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002131-exon-sc0000018-1575043694:325658..325753TCONS_00002131-exon-sc0000018-1575043694:325658..325753Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1575043694:321428..323310TCONS_00002131-exon-sc0000018-1575043694:321428..323310Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1510915933:325658..325753TCONS_00002131-exon-sc0000018-1510915933:325658..325753Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1510915933:321428..323310TCONS_00002131-exon-sc0000018-1510915933:321428..323310Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1491911889:325658..325753TCONS_00002131-exon-sc0000018-1491911889:325658..325753Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1491911889:321428..323310TCONS_00002131-exon-sc0000018-1491911889:321428..323310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:321428..325753 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0418297 0 25.3766 15.9414 14.7411 19.1005 17.2406 44.2617 22.4577 28.6309 14.2144 7.37712 4.69529 7.26845 4.16455 3.65482 5.50981 20.4892 17.0997 13.006 5.23628 4.13093 15.2698 16.2403 14.338 8.48128 3.86562 1.82361
Blast
BLAST of TCONS_00002131 vs. Swiss-Prot (Human)
Match: OSGI2 (Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens GN=OSGIN2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.277e-66
Identity = 142/396 (35.86%), Postives = 199/396 (50.25%), Query Frame = -2
Query:  617 SVIEWKYLPENEVRHVVLGFGPPGGSWHNMINSQLTVSLANWLELPGYTFNEWYEQKQLSLGNLPKVPSVGGVHPERTNPYYIGLYYSDYVKYMGLSSFFVDNVYVKSISQ----------------------SLSN--TSQWTVEGVQYTDQQTGETYTVKADNIVMATGAFNNPRKLEIPGEDFTFVHHHFPDFD------RLQTHKCPVVVVGCGLVAADAVLYLISRQIPVIHVFRRSPKDPNLVLNQL-SSAYADYXX------XXXXXXXXXKCEFYTPLPQHRLAEILPNKEVLIEPCGKKGGASFKVHVSRVIIHVGSKPNLDFIKXXXXXXXXXXXE-FNIKTNCLDTDLLTYECRGRKSLYAMGPLVGDNFIRFVSGGALGITHGL 1690
            SV+ WK    + + HVVLG GPPGG+WHNM  S LT+S  +W+ELPG  F +W   K+ SL              +R  P  I  YY  YVK MGL   F +N Y+ S+S+                        SN     W + G Q     +   + + A+N+ +ATG  ++P  LEI GEDF FV H  P+F       +L+    PV++VG GL AADAVL   +  IPVIHVFRR   DP+L+  QL    Y +Y K       +S     +    YT  P+HR+     + + +++      G      +S  ++ +GS PNL F+K++         +    K N ++ D  TYEC    +L+A+GPLVGDNF+RF+ GGALG+T  L
Sbjct:  105 SVLHWKLEQHHYIPHVVLGKGPPGGAWHNMEGSMLTISFGSWMELPGLKFKDWVSSKRRSLKG------------DRVMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQDDDDIQDRDISTKHLQIEKSNFIKRNWEIRGYQRIADGSHVPFCLFAENVALATGTLDSPAHLEIEGEDFPFVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEHRVLSFKSDMKCVLQSVS---GLKKIFKLSAAVVLIGSHPNLSFLKDQGCYLGHKSSQPITCKGNPVEIDTYTYECIKEANLFALGPLVGDNFVRFLKGGALGVTRCL 485          
The following BLAST results are available for this feature:
BLAST of TCONS_00002131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OSGI22.277e-6635.86Oxidative stress-induced growth inhibitor 2 OS=Hom... [more]
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