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TCONS_00002130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002130
Unique NameTCONS_00002130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002130 ID=TCONS_00002130|Name=TCONS_00002130|organism=Clytia hemisphaerica|type=transcript|length=1935bp
ATTCAGATCAGAGGATTAAATCAGAATCATGCTACCTGCGAGTGTGAAAT
AGACTGTGCGAGCAtttcaaataacaataatggtgtCATTTTCAATGTAA
TAACAGATAGCTATTAACTGATAACAGATTTTCAAAGTATGAAAAAGTAA
GTTTGTTCAATCCTTATTACCATACTGCATTAATATCCCAACTTCGTGTT
TCAAATCCCCATATGCCCTAACCTTTATATGTAAACCCCACCTATCGCCT
CCAATTTTAAGGAGAcccaaaattttcacttttagaTTTAAAGATTATAT
CCAAAAAGATATATTTATTTACATCTATCTATCTACATATATTGAAAGTT
CTCTAACTACTTAGCTCATTTCCCCTACAGCTTAAGAGAGCCTGTCTACA
GAGCATCCTCGAAAGAAATGAGAACCTGTTTTTAAAGTATCCTTTAATCA
CAAAGACCAGATATTTCAACAcgttttttacatcaaaaaggTGAACCTGT
ATTTCAACCATCCTTGGAAGAAAAATGACCAGCTGTTTTTCACACATCTT
CATTTTCAGCTTCGTTTCGGAATAAACCATGTGTGATGCCGAGAGCGCCA
CCAGATACAAATCGGATGAAATTATCTCCCACTAGTGGACCCATGGCGTA
TAACGACTTCCGGCCGCGGCATTCATACGTCAAAAGGTCAGTGTCTAaac
agtttgtttttatattaaATTCTTCCTCTGGATCCTCGCGTAGTAAATGC
TCCTCTTTGATGAAGTCCAGATTCGGTTTTGATCCAACATGGATGATGAC
TCGGCTCACGTGAACTTTGAACGAGGCACCGCCCTTTTTACCACATGGCT
CAATAAGTACTTCCTTATTGGGTAAGATTTCGGCCAATCGGTGTTGAGGA
AGTGGCGTGTAAAATTCACATTTTGATTTGAGCTGTATCAGcgattttaa
tttcaaatagtCTGCGTAGGCAGACGATAATTGGTTTAGAACGAGATTAG
GGTCTTTAGGCGAACGTCTGAACACGTGTATGACTGGTATCTGTCGTGAG
ATGAGGTAAAGGACTGCGTCTGCTGCAACTAGCCCACATCCTACTACAAC
CACAGGGCATTTGTGTGTCTGGAGTCGATCGAAATCTGGGAAGTGGTGAT
GTACGAAGGTGAAGTCTTCACCAGGGATCTCGAGTTTGCGTGGATTATTG
AAAGCTCCGGTTGCCATAACAATGTTGTCCGCTTTCACGGTATACGTTTC
ACCTGTTTGTTGGTCTGTATATTGAACGCCTTCCACCGTCCATTGTGACG
TGTTGGATAAGCTCTGTGAGATGGATTTGACGTAAACGTTATCAACGAAA
AATGATGATAAGCCCATATATTTGACATAGTCGGAATAATAAAGCCCTAT
ATAATAAGGGTTTGTACGCTCTGGATGTACACCACCGACGCTGGGAACTT
TTGGTAGATTACCAAGACTCAATTGTTTCTGTTCATACCATTCATTGAAT
GTATATCCAGGTAATTCCAACCAGTTTGCCAAACTAACAGTCAATTGTGA
GTTAATCATATTATGCCATGAACCACCTGGTGGACCGAATCCAAGAACAA
CATGTCGGACTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTCG
NCGGTGGACCAAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAA
TATTTCCATTCGATAACCGATTCGGGTTTGGTCAACATATCAGCATTTGG
ATGGTATAAATGGTCGAAGAGAATTGATACAGGATTCATGGTTCGTGAAT
CGAACAAACCTTCGCTCAGCCATTGTAAATCCTGCGGAAATGAAGAGAAT
CAAATTCTTTATTACATAGAAAAAGACAACTACAGATGAACATTCTTCAA
GTGatataaaaatcaaatatgAATTTAAAAAGTTC
Run BLAST on NCBI

transcript from alignment at sc0000018:321428..325745-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002130 ID=TCONS_00002130|Name=TCONS_00002130|organism=Clytia hemisphaerica|type=transcript|length=4318bp|location=Sequence derived from alignment at sc0000018:321428..325745- (Clytia hemisphaerica)
ATTCAGATCAGAGGATTAAATCAGAATCATGCTACCTGCGAGTGTGAAAT AGGTACCTTGGTGACGGTGCCCCATTTTGCTTAAACAGGTTAAAATTTGA AATACCCTTTACTTTATACCCTCAATATGACAATAATACCCTTTCGAAAA AGTCTCAAAATCATAATCTGATTGAACGTTTTTTTTTCTCTAGTACTTCC TAGTACTTTGGATGAGGGTCAAGTATTCTTAACTTATTAACACTTGACTT TTTTACAAACATGAGAAATGATCAATTTGAGAGTTTTGGACTTTTGAGTG AACATTTGGGTTAAAATTACATTTCTTCCTCAAAGCTTTCAATTTATCTC TAACAAAGAAAGCAGTTTTCTTCTGTTAACCAAATACGAAATAACTTATC AAATAACTTATTCTTATCAAATTCTGTGAAATTCACACTAGAGGGTATTC TTAGGGTATTCTAAAGATTTGGCCAATTTTCACCCTGATATTCTTATAGA AGATATTCTTATAAAAAAAGCGTGAACCAGCCACGTGTGGTCGAGTCCCA CTAAAGATGCTACAGATCCTAAAGGTTAGCCTATTACCTAATGGACGGGG TTGGTGGGATTAGCAGGGTAGGTAGAAAAATACAATAAGACTAGGGAGGG GAGTTTTCCTTAGTGGAAAGCTTGTAAAAGGCGACTAACAAAAAAAAACT ACTTCAAAATTTCGCTGCTCAAATAAAAAAGTGAACCAAGGTTTAGCATT TTGCTCTTTAAGTTCCGTTTTCTTTTTACTTTCTGTTATTTTACCAGGTT AAATTTTCTTGTAGTTGTTGTTTTTTAATTTTCTTTTGGGCTGAAATGGA ATGAAATATGAGATTGGATTAAAGAAAAAAAAACTAATTAGTTGAATAGT GCTTAAAACCAGAACCTGTTACTCGAACTTTCCGAACCGACTTTTCACTC AAACTTATTGAACCCCGGAGGGGCACTCGATTTCTAAACGGCGGCATGTG CCGCCGAAAATTGCCTTTCAAAATCGGACCCTTATGCAGTTCTTGAGCAG TGAAAAGGTACCCTTACAGTGCATTTTACCGAACGTTTCTGACCCTTACA GTGCAGCTTGATTTCATATCTTATTTTGCTGAAGCCATCTGAAAATGAGT CTGAGATGTCGACACAATAATGTGAATTAAAACTGTAAAGATACACCAGA TTTTTACTGTCAGACTTGCAATTAAGTAGTTCTCGAACACACCCTTACAG TGTATCCAGCTAAAAGAACACCCTTGTAGTGCACTCTATCAAAGTACACC CTTACAGTGCATTTCAAGGGTCTCGAAAAATCGAACCATATGAGTGCCCC TGTTCGAGTAATAAGGTCTGAAAAATTTGATTTTGGAAGGTAGAAACCAA ATGTCAACTCATTAAGAAAATACAAGCTTTTTTTCGTCAACCAATATATA TTTTCTGTTTTTTAAAATTTTCAATTTTCGTCAAAAAAGTGATGTTACTA CATAATACAATGTCGTCATTAAAAAAGAAAAGAAAAAGAAAAAGAAACTG TTTATGAAAAATCCTCTTCAAAAAGTATGTTCGCTTTAAGCTTGAGGTAC CTTTGAACTTTATGTTTGTTCGTAATATAAGAGACATTATATTCCGACTA GGCTTAAGGGGTTCTTATCCAACGCTTGCGCCGAAATTGAGCATACAGTG TGTCCCAAAAAAGTAAACAAATTATTATATTAAAGTCATCATTATATATG CGAAGTTTTATGACTTAGTTTACTTGTTTACTTTCAATCTCCAAAAATTA ATTTAGTCATCTTGGGAATTGAATATCTAATGATTGAACAAAGAATTCTA ATCTTCAATTATTCCATTCCCCAGTTTAGATGACGAGTTTTGTGTTTTGA GGATTTTCCTTTATATAAAAATATGCCCGCTTTTTTTTGGGACATACTGT ACATTCTTGTTCTCACTCGTTATAGAGAGACGAAAGCTTTCCAATAAAAT TTAAGCTTCTGCGAATATTACTTTTTGAAGGATCTCCTGTTTTTATAGTT TTTAAAATTCAGATACCATAATATCGAAAAATATTCATGCACATTTCTAT TTACAATACAATAGTTCTATTTATACTGAGACGATTAATTTGTCTGAGAC GAGCAATTTAGAAAATGAGCATTATGGAGGAGTGTACTTTTTATTCATGT TTCAATAAATAGGATTTCCTCCACAGATCACATTTTACAAACTACTCGTC TCAGACGATTTTTCCGTCTCAGTATAAATGGAACTAATGTTTAAAAAAAG TGTAAAATTGGTTGTTCTTGTTTAATAAATTGGGAATAAATTACTGCGTG TCTTTAACTTAATAATATAGCTCATAATTTCTACGACTACTAATTTTAAT AATACCTTGAAATTAACTCATTTATTTTTCTACAGACTGTGCGAGCATTT CAAATAACAATAATGGTGTCATTTTCAATGTAATAACAGATAGCTATTAA CTGATAACAGATTTTCAAAGTATGAAAAAGTAAGTTTGTTCAATCCTTAT TACCATACTGCATTAATATCCCAACTTCGTGTTTCAAATCCCCATATGCC CTAACCTTTATATGTAAACCCCACCTATCGCCTCCAATTTTAAGGAGACC CAAAATTTTCACTTTTAGATTTAAAGATTATATCCAAAAAGATATATTTA TTTACATCTATCTATCTACATATATTGAAAGTTCTCTAACTACTTAGCTC ATTTCCCCTACAGCTTAAGAGAGCCTGTCTACAGAGCATCCTCGAAAGAA ATGAGAACCTGTTTTTAAAGTATCCTTTAATCACAAAGACCAGATATTTC AACACGTTTTTTACATCAAAAAGGTGAACCTGTATTTCAACCATCCTTGG AAGAAAAATGACCAGCTGTTTTTCACACATCTTCATTTTCAGCTTCGTTT CGGAATAAACCATGTGTGATGCCGAGAGCGCCACCAGATACAAATCGGAT GAAATTATCTCCCACTAGTGGACCCATGGCGTATAACGACTTCCGGCCGC GGCATTCATACGTCAAAAGGTCAGTGTCTAAACAGTTTGTTTTTATATTA AATTCTTCCTCTGGATCCTCGCGTAGTAAATGCTCCTCTTTGATGAAGTC CAGATTCGGTTTTGATCCAACATGGATGATGACTCGGCTCACGTGAACTT TGAACGAGGCACCGCCCTTTTTACCACATGGCTCAATAAGTACTTCCTTA TTGGGTAAGATTTCGGCCAATCGGTGTTGAGGAAGTGGCGTGTAAAATTC ACATTTTGATTTGAGCTGTATCAGCGATTTTAATTTCAAATAGTCTGCGT AGGCAGACGATAATTGGTTTAGAACGAGATTAGGGTCTTTAGGCGAACGT CTGAACACGTGTATGACTGGTATCTGTCGTGAGATGAGGTAAAGGACTGC GTCTGCTGCAACTAGCCCACATCCTACTACAACCACAGGGCATTTGTGTG TCTGGAGTCGATCGAAATCTGGGAAGTGGTGATGTACGAAGGTGAAGTCT TCACCAGGGATCTCGAGTTTGCGTGGATTATTGAAAGCTCCGGTTGCCAT AACAATGTTGTCCGCTTTCACGGTATACGTTTCACCTGTTTGTTGGTCTG TATATTGAACGCCTTCCACCGTCCATTGTGACGTGTTGGATAAGCTCTGT GAGATGGATTTGACGTAAACGTTATCAACGAAAAATGATGATAAGCCCAT ATATTTGACATAGTCGGAATAATAAAGCCCTATATAATAAGGGTTTGTAC GCTCTGGATGTACACCACCGACGCTGGGAACTTTTGGTAGATTACCAAGA CTCAATTGTTTCTGTTCATACCATTCATTGAATGTATATCCAGGTAATTC CAACCAGTTTGCCAAACTAACAGTCAATTGTGAGTTAATCATATTATGCC ATGAACCACCTGGTGGACCGAATCCAAGAACAACATGTCGGACTTCATTT TCGGGTAAATATTTCCATTCGATAACCGATTCGNCGGTGGACCAAATCCA AGAACAACATGTCGGACTTCATTTTCGGGTAAATATTTCCATTCGATAAC CGATTCGGGTTTGGTCAACATATCAGCATTTGGATGGTATAAATGGTCGA AGAGAATTGATACAGGATTCATGGTTCGTGAATCGAACAAACCTTCGCTC AGCCATTGTAAATCCTGCGGAAATGAAGAGAATCAAATTCTTTATTACAT AGAAAAAGACAACTACAGATGAACATTCTTCAAGTGATATAAAAATCAAA TATGAATTTAAAAAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001111XLOC_001111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002130-exon-sc0000018-1575043694:325694..325745TCONS_00002130-exon-sc0000018-1575043694:325694..325745Clytia hemisphaericaexon
TCONS_00002130-exon-sc0000018-1575043694:321428..323310TCONS_00002130-exon-sc0000018-1575043694:321428..323310Clytia hemisphaericaexon
TCONS_00002130-exon-sc0000018-1510915933:325694..325745TCONS_00002130-exon-sc0000018-1510915933:325694..325745Clytia hemisphaericaexon
TCONS_00002130-exon-sc0000018-1510915933:321428..323310TCONS_00002130-exon-sc0000018-1510915933:321428..323310Clytia hemisphaericaexon
TCONS_00002130-exon-sc0000018-1491911889:325694..325745TCONS_00002130-exon-sc0000018-1491911889:325694..325745Clytia hemisphaericaexon
TCONS_00002130-exon-sc0000018-1491911889:321428..323310TCONS_00002130-exon-sc0000018-1491911889:321428..323310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:321428..325745 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.129515 5.09938e-08 0 0 0 0 0 3.17581e-08 0 0 0 5.97143e-07 0.618381 3.10456e-05 0 2.54246e-06 2.80193 9.90301e-07 0 0 1.38881e-07 0 0 20.5185 18.681 0.263357 1.45658
Blast
BLAST of TCONS_00002130 vs. Swiss-Prot (Human)
Match: OSGI2 (Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens GN=OSGIN2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.746e-66
Identity = 142/396 (35.86%), Postives = 199/396 (50.25%), Query Frame = -2
Query:  573 SVIEWKYLPENEVRHVVLGFGPPGGSWHNMINSQLTVSLANWLELPGYTFNEWYEQKQLSLGNLPKVPSVGGVHPERTNPYYIGLYYSDYVKYMGLSSFFVDNVYVKSISQ----------------------SLSN--TSQWTVEGVQYTDQQTGETYTVKADNIVMATGAFNNPRKLEIPGEDFTFVHHHFPDFD------RLQTHKCPVVVVGCGLVAADAVLYLISRQIPVIHVFRRSPKDPNLVLNQL-SSAYADYXX------XXXXXXXXXKCEFYTPLPQHRLAEILPNKEVLIEPCGKKGGASFKVHVSRVIIHVGSKPNLDFIKXXXXXXXXXXXE-FNIKTNCLDTDLLTYECRGRKSLYAMGPLVGDNFIRFVSGGALGITHGL 1646
            SV+ WK    + + HVVLG GPPGG+WHNM  S LT+S  +W+ELPG  F +W   K+ SL              +R  P  I  YY  YVK MGL   F +N Y+ S+S+                        SN     W + G Q     +   + + A+N+ +ATG  ++P  LEI GEDF FV H  P+F       +L+    PV++VG GL AADAVL   +  IPVIHVFRR   DP+L+  QL    Y +Y K       +S     +    YT  P+HR+     + + +++      G      +S  ++ +GS PNL F+K++         +    K N ++ D  TYEC    +L+A+GPLVGDNF+RF+ GGALG+T  L
Sbjct:  105 SVLHWKLEQHHYIPHVVLGKGPPGGAWHNMEGSMLTISFGSWMELPGLKFKDWVSSKRRSLKG------------DRVMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQDDDDIQDRDISTKHLQIEKSNFIKRNWEIRGYQRIADGSHVPFCLFAENVALATGTLDSPAHLEIEGEDFPFVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEHRVLSFKSDMKCVLQSVS---GLKKIFKLSAAVVLIGSHPNLSFLKDQGCYLGHKSSQPITCKGNPVEIDTYTYECIKEANLFALGPLVGDNFVRFLKGGALGVTRCL 485          
The following BLAST results are available for this feature:
BLAST of TCONS_00002130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OSGI21.746e-6635.86Oxidative stress-induced growth inhibitor 2 OS=Hom... [more]
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