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TCONS_00002127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002127
Unique NameTCONS_00002127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002127 ID=TCONS_00002127|Name=TCONS_00002127|organism=Clytia hemisphaerica|type=transcript|length=1202bp
AGCTGCAAAGAAAGTACAAAATGATGCAAAATTACATGCGATTAATAATA
ATTATCAAAGAAATGTTCatgttaaaaaattcgaaattgaTTTGAAGTAG
CTAACAATTCTCTCTGATATAAAAGTGACGTATATACAAAATATTACGAT
TTCCTTAGCATACGATACACTGAACATTACAActattttatttacaaaaa
catGGTACACGAAATAattcattttttgcacaaatcatCATTTATATGTT
CGAAAAGCTCTTCACCAGTCTCAAAAGTTTTAGCGTTAACATCACCGAAA
CATCCCTCTATCCTCTTCGCTAAAAATTGCCGGTAGTATAAGTCTTGCTT
TTCAAAATATGGACAATAATACCACGATTCTTCCCCGTTTAAAATAAGGA
TGTAAACATATCTTTTGTTCTTTTCCTTGTTAAGGGGATGGTTTTTCCAA
TTAAACTCAGTTTTACTCAAATGCCCGTCTGATGATAGTTTCATGCCTTC
CAAGCtagaagaaaaatgaatttctaATGGTTCTTGGTTTACTTTAGAAC
GATGGTCGTTTACTTTTCTTAAAATGGCCGACGCCATTGGAACATAGGTA
AATTTAATATTAACAACAGTAATGAATATCTTTCGAATCTCCTTCATACA
ATCATCAGTGAAAAAATTTGTCTTAGACACGACCCAACGGTACGTCATAT
CGTAAACATCAAAGTCTGGATTTTTTATGACATCAAATAGTGTCTTAATG
ACTGGGTGCTGCATTGAAACACTATACTCAATTCTTTCACGTGTTTCAAT
ATTTCGATTTAATGGAAGCCAATCTATTGGTTTATAATAAGTGTAAGTCC
TAAAAACAATAACTGCCCATTGTCTCTTGTCCTGCAATAACTCCAGATAT
ACGAGCATTTCATCAGCAAAACGGATATCACGTTCCATAGAGACAATAGT
TTGTTTAATGTTTTTGTCGTTTCCCATGATTTTCTCATCGTAAAGCTGCT
TTATTAGTTCGGCGATTCTACGCAGTTCGTTATCAAATCGAGATGATTCA
AATTGAAACTTGTTTGTTCGAAATTGAAGTTGATTGATATTGTAATTCTT
TCTCAATCTGACTATGTCAAAACCGTCGAAGTAGTTCACCATAAAACATG
CTTCATTGTCAAGTAAATCGTTTAATCCTTGCAAGAAAAAATGGTGATCA
AA
Run BLAST on NCBI

protein sequence of TCONS_00002127-protein

>TCONS_00002127-protein ID=TCONS_00002127-protein|Name=TCONS_00002127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
FDHHFFLQGLNDLLDNEACFMVNYFDGFDIVRLRKNYNINQLQFRTNKFQ
FESSRFDNELRRIAELIKQLYDEKIMGNDKNIKQTIVSMERDIRFADEML
VYLELLQDKRQWAVIVFRTYTYYKPIDWLPLNRNIETRERIEYSVSMQHP
VIKTLFDVIKNPDFDVYDMTYRWVVSKTNFFTDDCMKEIRKIFITVVNIK
FTYVPMASAILRKVNDHRSKVNQEPLEIHFSSSLEGMKLSSDGHLSKTEF
NWKNHPLNKEKNKRYVYILILNGEESWYYCPYFEKQDLYYRQFLAKRIEG
CFGDVNAKTFETGEELFEHINDDLCKK
Run BLAST on NCBI

transcript from alignment at sc0000018:301398..302599-

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002127 ID=TCONS_00002127|Name=TCONS_00002127|organism=Clytia hemisphaerica|type=transcript|length=1202bp|location=Sequence derived from alignment at sc0000018:301398..302599- (Clytia hemisphaerica)
AGCTGCAAAGAAAGTACAAAATGATGCAAAATTACATGCGATTAATAATA ATTATCAAAGAAATGTTCATGTTAAAAAATTCGAAATTGATTTGAAGTAG CTAACAATTCTCTCTGATATAAAAGTGACGTATATACAAAATATTACGAT TTCCTTAGCATACGATACACTGAACATTACAACTATTTTATTTACAAAAA CATGGTACACGAAATAATTCATTTTTTGCACAAATCATCATTTATATGTT CGAAAAGCTCTTCACCAGTCTCAAAAGTTTTAGCGTTAACATCACCGAAA CATCCCTCTATCCTCTTCGCTAAAAATTGCCGGTAGTATAAGTCTTGCTT TTCAAAATATGGACAATAATACCACGATTCTTCCCCGTTTAAAATAAGGA TGTAAACATATCTTTTGTTCTTTTCCTTGTTAAGGGGATGGTTTTTCCAA TTAAACTCAGTTTTACTCAAATGCCCGTCTGATGATAGTTTCATGCCTTC CAAGCTAGAAGAAAAATGAATTTCTAATGGTTCTTGGTTTACTTTAGAAC GATGGTCGTTTACTTTTCTTAAAATGGCCGACGCCATTGGAACATAGGTA AATTTAATATTAACAACAGTAATGAATATCTTTCGAATCTCCTTCATACA ATCATCAGTGAAAAAATTTGTCTTAGACACGACCCAACGGTACGTCATAT CGTAAACATCAAAGTCTGGATTTTTTATGACATCAAATAGTGTCTTAATG ACTGGGTGCTGCATTGAAACACTATACTCAATTCTTTCACGTGTTTCAAT ATTTCGATTTAATGGAAGCCAATCTATTGGTTTATAATAAGTGTAAGTCC TAAAAACAATAACTGCCCATTGTCTCTTGTCCTGCAATAACTCCAGATAT ACGAGCATTTCATCAGCAAAACGGATATCACGTTCCATAGAGACAATAGT TTGTTTAATGTTTTTGTCGTTTCCCATGATTTTCTCATCGTAAAGCTGCT TTATTAGTTCGGCGATTCTACGCAGTTCGTTATCAAATCGAGATGATTCA AATTGAAACTTGTTTGTTCGAAATTGAAGTTGATTGATATTGTAATTCTT TCTCAATCTGACTATGTCAAAACCGTCGAAGTAGTTCACCATAAAACATG CTTCATTGTCAAGTAAATCGTTTAATCCTTGCAAGAAAAAATGGTGATCA AA

Coding sequence (CDS) from alignment at sc0000018:301398..302599-

>TCONS_00002127 ID=TCONS_00002127|Name=TCONS_00002127|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0000018:301398..302599- (Clytia hemisphaerica)
TCATTTTTTGCACAAATCATCATTTATATGTTCGAAAAGCTCTTCACCAG
TCTCAAAAGTTTTAGCGTTAACATCACCGAAACATCCCTCTATCCTCTTC
GCTAAAAATTGCCGGTAGTATAAGTCTTGCTTTTCAAAATATGGACAATA
ATACCACGATTCTTCCCCGTTTAAAATAAGGATGTAAACATATCTTTTGT
TCTTTTCCTTGTTAAGGGGATGGTTTTTCCAATTAAACTCAGTTTTACTC
AAATGCCCGTCTGATGATAGTTTCATGCCTTCCAAGCTAGAAGAAAAATG
AATTTCTAATGGTTCTTGGTTTACTTTAGAACGATGGTCGTTTACTTTTC
TTAAAATGGCCGACGCCATTGGAACATAGGTAAATTTAATATTAACAACA
GTAATGAATATCTTTCGAATCTCCTTCATACAATCATCAGTGAAAAAATT
TGTCTTAGACACGACCCAACGGTACGTCATATCGTAAACATCAAAGTCTG
GATTTTTTATGACATCAAATAGTGTCTTAATGACTGGGTGCTGCATTGAA
ACACTATACTCAATTCTTTCACGTGTTTCAATATTTCGATTTAATGGAAG
CCAATCTATTGGTTTATAATAAGTGTAAGTCCTAAAAACAATAACTGCCC
ATTGTCTCTTGTCCTGCAATAACTCCAGATATACGAGCATTTCATCAGCA
AAACGGATATCACGTTCCATAGAGACAATAGTTTGTTTAATGTTTTTGTC
GTTTCCCATGATTTTCTCATCGTAAAGCTGCTTTATTAGTTCGGCGATTC
TACGCAGTTCGTTATCAAATCGAGATGATTCAAATTGAAACTTGTTTGTT
CGAAATTGAAGTTGATTGATATTGTAATTCTTTCTCAATCTGACTATGTC
AAAACCGTCGAAGTAGTTCACCATAAAACATGCTTCATTGTCAAGTAAAT
CGTTTAATCCTTGCAAGAAAAAATGGTGATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001110XLOC_001110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002127-exon-sc0000018-1575043694:301398..302599TCONS_00002127-exon-sc0000018-1575043694:301398..302599Clytia hemisphaericaexon
TCONS_00002127-exon-sc0000018-1510915933:301398..302599TCONS_00002127-exon-sc0000018-1510915933:301398..302599Clytia hemisphaericaexon
TCONS_00002127-exon-sc0000018-1491911889:301398..302599TCONS_00002127-exon-sc0000018-1491911889:301398..302599Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002127-proteinTCONS_00002127-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:301398..302599 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.784232 1.41185 0.968422 0.549252 1.08524 0.657046 1.46988 1.68926 0.488956 1.70085 0.361971 0.31334 3.55512 2.87457 1.38571 1.92982 0.621965 0.632127 3.36656 6.10923 0.96386 0.826164 1.53195 1.45486 0.153438 0.290113 3.62999 1.51399 1.38989 2.24708
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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