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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002126 ID=TCONS_00002126|Name=TCONS_00002126|organism=Clytia hemisphaerica|type=transcript|length=357bp
AGCTGCAAAGAAAGTACAAAATGATGCAAAATTACATGCGATTAATAATA
ATTATCAAAGAAATGTTCatgttaaaaaattcgaaattgaTTTGAAGTAG
CTAACAATTCTCTCTGATATAAAAGTGACGTATATACAAAATATTACGAT
TTCCTTAGCATACGATACACTGAACATTACAActattttatttacaaaaa
catGGTACACGAAATAattcattttttgcacaaatcatCATTTATATGTT
CGAAAAGCTCTTCACCAGTCTCAAAAGTTTTAGCGTTAACATCACCGAAA
CATCCCTCTCTCCTCTTCGATAAAAATTGCCGGTAGTATAAGTCTTGCTT
TTCAATA Run BLAST on NCBI transcript from alignment at sc0000018:293139..302599- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002126 ID=TCONS_00002126|Name=TCONS_00002126|organism=Clytia hemisphaerica|type=transcript|length=9461bp|location=Sequence derived from alignment at sc0000018:293139..302599- (Clytia hemisphaerica)
AGCTGCAAAGAAAGTACAAAATGATGCAAAATTACATGCGATTAATAATA
ATTATCAAAGAAATGTTCATGTTAAAAAATTCGAAATTGATTTGAAGTAG
CTAACAATTCTCTCTGATATAAAAGTGACGTATATACAAAATATTACGAT
TTCCTTAGCATACGATACACTGAACATTACAACTATTTTATTTACAAAAA
CATGGTACACGAAATAATTCATTTTTTGCACAAATCATCATTTATATGTT
CGAAAAGCTCTTCACCAGTCTCAAAAGTTTTAGCGTTAACATCACCGAAA
CATCCCTCTATCCTCTTCGCTAAAAATTGCCGGTAGTATAAGTCTTGCTT
TTCAAAATATGGACAATAATACCACGATTCTTCCCCGTTTAAAATAAGGA
TGTAAACATATCTTTTGTTCTTTTCCTTGTTAAGGGGATGGTTTTTCCAA
TTAAACTCAGTTTTACTCAAATGCCCGTCTGATGATAGTTTCATGCCTTC
CAAGCTAGAAGAAAAATGAATTTCTAATGGTTCTTGGTTTACTTTAGAAC
GATGGTCGTTTACTTTTCTTAAAATGGCCGACGCCATTGGAACATAGGTA
AATTTAATATTAACAACAGTAATGAATATCTTTCGAATCTCCTTCATACA
ATCATCAGTGAAAAAATTTGTCTTAGACACGACCCAACGGTACGTCATAT
CGTAAACATCAAAGTCTGGATTTTTTATGACATCAAATAGTGTCTTAATG
ACTGGGTGCTGCATTGAAACACTATACTCAATTCTTTCACGTGTTTCAAT
ATTTCGATTTAATGGAAGCCAATCTATTGGTTTATAATAAGTGTAAGTCC
TAAAAACAATAACTGCCCATTGTCTCTTGTCCTGCAATAACTCCAGATAT
ACGAGCATTTCATCAGCAAAACGGATATCACGTTCCATAGAGACAATAGT
TTGTTTAATGTTTTTGTCGTTTCCCATGATTTTCTCATCGTAAAGCTGCT
TTATTAGTTCGGCGATTCTACGCAGTTCGTTATCAAATCGAGATGATTCA
AATTGAAACTTGTTTGTTCGAAATTGAAGTTGATTGATATTGTAATTCTT
TCTCAATCTGACTATGTCAAAACCGTCGAAGTAGTTCACCATAAAACATG
CTTCATTGTCAAGTAAATCGTTTAATCCTTGCAAGAAAAAATGGTGATCA
AAAGTAGCATGGAAAGTATCAGCAAAATAATCCTCATGAAAGGTTATGAA
GGTGACGTTCCTGAATTCTGAACACCCTAACATTGAAAAGTCGTTGAAAT
TCTGCACAACACCATTGGAAGCTGTAAAATAAACACATGTTGATATCAAG
AATATCAAAGTTACATGAAACATGTTTGTTTTCTTCTTATTTTTTGCCTT
TAAACGTTTTCAGTGTCGACGATAGAGTGTTATTACTGCTATGCATTTAA
TCTCAGAGTTTTTTGCCTTATCTCTTTCACTTAACTAATTTATTTGATAT
AAATTAAATGAGACCTACCTACCTCGTTAAAATAGACTAATGATGCGATA
AGATGGGGATAAGATCACGTAGGAAAAAGTCCAAAATGCTATTTCATGTC
ATATCTCATTTGTTAAATTATTTTCCTTGATCATTTTAGTAATCTGCATG
ATCTTTTCAACAGTATAGGTTATTTGCAATTTTTCTACTAAGTTTCTACT
CGCAAAAGTTTGTACGCCTAAAGTATAAATATTACTGCTACTATGGATTT
AATCTAATCTGAAAGTTTTTTTGCCTTCTCCATTTCACTTAAACAAAATA
ATTACTGTTAATTAAATAAAAAGGGAAAAATGAAATTAATCTGTTGCGTT
TGCTTAAATTACTTAACTTTGTCGCTACCTCGTTAAAATAGATTGATGAT
GTGATAAGATCACGTGGAAAAATTGGCGAAATGCTATTTCTTGTCATGTC
TCATTTTTGTTGAATTACATGTTTTTTTATAAGAATATCCAAAATTTTTG
AAGCCTGCAGATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAAATGTTTT
TAACATGTTCTTATTTTCACCATTTTGTGAATATTTTTGGCCATTTTCCT
AAGAAATAGGGTGTTTTTGAGTCCAAGAAGCACATCGTCCTTAGTGTATT
GGTCTGGTTTTTTTAGATAATGCATCGCGCAGAAAGGGGTTTCCAGATCT
TGTCATGTTTTATTTGATTGACGCGTTATTGACGTAAACCCCCGTCTTTG
TCTCGGAAAAATAGGAAAATTTCAACTTTTACCCCCTGAAAGATCGAAAT
TTGGTCAAAATTGGTCAAATTTGTCCCGCTAAGGGTCACAAAATTCGCAA
AATTTTCCTTTGTTTTCTCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGTTTTCCACCAAGGATTGGCGATCAGGTTGTACAGGAAAAATAAGAAA
AATCTTTTATTAAACTGTTGCTTGAAAAAACTGGCTTTTAAGGGGGAGGG
TGGGTCGTGCTTGGAGAATTTGGTTCTGTACGTCCTGATAGGTTCTGATG
TTTTCATCAATAGAATCAACCGACGAAGAAAAACAGTTTAGGTTTCATTG
ATATTCGGTAGCCGTAAAAAAAGCGTATGTTTTCAAACTATACTTCCATA
ATTGCATTAAGTAAATAACGCTTCGTAATTATTTCTCTGAAAATAGGTAA
CAGTCGGAAAGAAATAGAGAAAACAGTCGATTTTGGTAAGAATTGGAATA
CTTTTGATAGAATACAAGGTACAAAAAGATAGAGAAAAGAATAATGAAAT
TGTTCGTAACATTCCCATAAACTTCGAAAAAAAAAACAATCCTAAATTCC
GAGGGTTCTTGATACTTTAAAACTGTTTTCACAATATACTTTTTTCACGA
TACACGCTTTTTTTAAGAAGAATACACTTTATAAGAATGTCGACGATGAA
ATGGCCAAAAAATTAAGAATAATGCTAAATAATATCACCATCATATAATT
TTGCTACTCAAGCTAAGAATGCCATTTCTAGAGCATTTTCGATTATAAAT
TGTCAATTACCCCCAAGTAAGGATCACTCCTTTCACAAAAATGTCAGTTT
ATGCTTGAGACGTATGTACTAAATGTTGAATCTAGTCTGAATTAGGATTC
TAATTTAAGAATGCTGTAAGAATATTTTAGGATGATTTTCCCAAAAAAGT
TGAGAATATCCATGATGAAATGGATATACACCGTGTACACCTTTTTCTGG
TTAGCTGTTTCGTATAAAAAGTCACCAAAATTTCGAGTAAACAAATCATC
CCATTGGTTAAAAGCAAAAACATGGTTGTCCTTTTGCGGGAGGCTAGGAA
CCTTTAGTGTTGTACTATTTGTTCGTGTTACCTATACTATAAATAAAAAA
CAAGTTACTGAACCTACTGCAGAATCTATTTTGTCGGCTAAATCCTTGAG
GTATATGGCAACGTGGAGCAGTTTGGCTAGAGACAGATCTAACTCTTGGT
ATTATTGTGATCAGTATACCCAGTCTCTCCAAGCTTGTTTGTTTATTTCA
GTATCGTTGATCGTGCTAGTGATGATTCTGTGAGTCTAGGTAGATCAGAA
GCCTTTTGTCTGAGGTTTCCGTTTGATATCGATTCCAGTTTCCGCCAAAT
ACTGAAAAATAGCGATTCTGTATAAGGAAACGTAAGTGATGATAATTTGG
GTTTATTGACGGGTGATTCGTTGCTCATCATATGTGAGTTAAGGATTCTG
GATTTGAGAAAATGATATTCTTTAGAAATAGAATTTTTAATGCTGAGAAG
GTGCCTGTTGGTACCTGTCGGCTAGGATATTTTACGTTTACATAAAAATG
ATTACGAAGTTTTGTGTGGAAAATGTGCGTTGAAAATCTACTGTCCGTGT
TGACTTGAAAAACTCAGTGTACCTGTCAACCAGTAATTTTGTATGGAGTA
AACGAGATACTGAAAACCATAGGGTACCTGTCGGCCAGGAACTTTTTCTG
TACGGAAAAGACGAAGCACTCTTGTAAAAAGATCGAAATAAAAAATTAGG
AGCTGTGTGATGAACTGTCAGTCAGGAATTTTTGTTTCAAAGAAAAAAGT
TAAAATCCTATACCTTTTAGAGCCTCATAAAGTGTAGTTCCGAAATATTT
GGGGAAAACGAATGTCGGGTGTAATCTGTCAAAAGGGGATTGTTGTAGTG
TTTTTAGGTTGAAAAGAAAAGAACAATTTTTCTTTGATGTAGAAAGATTT
TAGCCGTATTGTCGTCCTTATCAAAATTTATGCACAAATTATATAAGGAA
TAATCTATTAATAGTGCTAAAGTATAAAGTTTTGAAAATTCGCATCAAGG
TCTCTTTGATGATTGAGGACTGATGTAGAACAGGTCAAGGAGTAGTCATG
TACATAATCGAAGAAATGTGTGCCGTTAGGGATAATTAAAGGCCAATAGT
AAGCTGATTTTCATACTGGGACCATTAGTATTCCTTTTGCCTTACAGTCT
CAACAATGTTTTAGTGTTTTTCAAATCAAGGAGATATGCGGACACAACCA
TTTGAATTATACTTTCCAGTTTGTTGTGAAAGTGTCGACATATGATGTTT
ATGGACAATTATTGAAATGCTTGGTATTGAAATCGTCGGCGAATCTGATT
ACGGTGATTAAGCCCAGCTTAGATTGCACGTGGCGGAATGTTTCGTTTTT
ATAGACCAGTTATCATTGTCCTTTGCTTTAGAGTACCAGTACATGTTGAT
CTCTCTAGGGCTCCAGTTAAGTTGGACTCTGAAATTATGTTTGACTGCTA
AGTTTTAGACGTGGACGGCTTGTTAGTGAAGGTGCGGTTTAGTCCACCTC
GATAATCTTTGCTGCATTCAGGTTGTCTGTTTTAATGGCTACCGTATTTG
AGAAAAGATGCGCTTTGATTAACTCAGGAACAACCAGTATGGCTAAGAGC
TCTCTAAAAGTGGAGCTTTTGTCCCATTTTTTGTGAGATGAATCTTCCTT
TGGCAATTATGTTTCCTTTGTCTTGTAGTAAATAGCCTCTGTAACCGAAT
TCGTTTGCGTCGGTAAAAACAATTTTGTTTGACTAGGTTTGTGTTTTATA
GACGTACCGTTAGATGATTCGAGACTTTTTGACCAGAATTCGAGTTCCCA
TATTGCTCCTTCAGGGAGAATATGTTTATTCAGCCATTGAGGATTTGCCT
CTATGAAGAAGTATAAGTTCCTTGTCATTAATCGGGCTATGGAACCTAGC
GCCGGTGTCATTGAGATGAGATGTCCTGTTATCCTGGATATGTTTTTTGG
TGATGATCTCTAGTTCGTTATTGAAGATTTTATTAACTGTAAGACTTTTG
TTATTTTCTTTTTTGGCTCTGAGAAAGTCATATTGGTTGTGTTGATGATG
AAACCAAACCACTTTCTAACTTTAGATGGAATCAGATTGGACTTTTCGAA
GTTGATTGTAAGAACTAGGCTAGTAAGATCTTGTATCACCATGTTGACTA
TTTCTGTGGATTCTTGTGTATGATTTATCTCCGCAAATACCATCGACTAA
AACCACGCATCGAACTCCCATAGATCTCAATTTTTTAATGAGGGGCCTCA
AGAGCTTGGTGAATGCATAACATGCTATCGAGAGACCAAATGGCAAGACT
TTAAATTGAAAATACCTTCTTTTCCCTGATTCGAATTTCCAAGAAAATCC
AAGGTATTTCCAGTGTCCCTTTGTAATAGGTACGTAATGGTAGCCTGATT
TTAAGTCTAAAGTGCGCCGAAGTAAAAGTCTTTGTTCGAGTAGCTCGGCA
ACGGTTTTCAAGTTTTCGTATTTGAATTTTATTTACACGAGGTATTTGTT
CACGTACAGTCTAAGACTAGCCTTAACTTTTCATTTTCCTCGGCGACTGT
CAGAGGATTTACACAAAAAGATGGTGCAGAAATCCATTGGACACAATCAT
TGGCTAGTAACTCTGATATTGTAGACTTGACAAAATCAGGGAAATGTATA
CTTGACTTGTTATTTTTAGCAAAAATGGAGATTGCCACTATTTAAATGGT
AGGTTGATGTCTATGTTTAGCACAAATTGAGAAGGATTAATCGAAAGCCA
ATTGTTGAAATAGTGTCTAATCTTCCAGGTGACTGAGGATGCGTTGTGCT
GATATGAATAATTTAAAGAGGAAAAACTTACATTTATTTGATCAGGAAGG
CTGGCTTAGAGTCGTATATTTTGATTTGGGACAGCTGAATGCAAGAAAAA
AAATTTTGTTGAGTATGGTTGAAAAGTTTGTAAGCAACTTGTGGTTTGGT
AAACAACGATAAAAGTTGAATGTGTTCTTGGAGCTGCGAAATTTAGAAAA
TTGAATTCGTAGAATCGTAGAGGGAAAAAATTTCCGGGAAAATTATGTTG
CAAGTGATGAAACAAGACAAATCGTTTCTTGGAAATGAGAATTTCTAATT
GAGAGATAATAAGATTATATATAAGGGCAAAAACACAAAGCCTGTGTGAA
AGGATAAATTAATATATATTATACAGTATAGGTTTATCATATATGTTTAC
TGATAAAGTATTTGATTAATTTGCAGGTTATATCTTCAAGAATAATTTGT
AAGATGCTTGTAGAGGCTCTTCCCTGTGCGATTCTTTTCTTAGTGGGCAA
TGGATGGCGTAATGTCCAAAACGTAGACAATTGAAACATTTAATGTCGTC
AAAAGATTTCTTGGTAGTGGTCTGTTATTGTTATTTTGCCTATTATTTTC
GGGGAAATTTGCTCGTCAGTTTAGATTTAGTGTATCTGTCCCTAATCTCT
CTAGCTGCTCTACGAGCATTTTTCAACCTTTTATTTTTTCGTTGTCACTT
GATAGGAGGCGTCGTCTTTCTAAAATTCTGACGCTGTAAGCCAGTCGTCT
TGATCGCCTATCATAATTAACTTATTTCTGTCTTCAGGAGTTGAGGTGTG
TTTGATTCTTTCACCTGGTCTGGTCCTGTCCAATTCCTCCTTCAGTTCAT
TTATTTCGGTCTCTTGTTGCAGCAAGGATGGATTGATGATGTTGGTGTAT
ATTGTCAGCAACACGTTGTTAGATATTGCTTGTAGTTGATCATTTGTTAG
GTATGCTAATCACCCTTTGTGCTTGTTGGCCTTCCATTGTTGATGCTTGT
AAAGATATAGTTCGATCTAATTTTGTTGTTGGAGAATTTGGACGGACGTC
CATCATTAAAATTAAAAAGGGATGCAAGTGGATCTGGATACTAGAATATG
TCTATGAAAGATGATGAGAATTTAATGCAAATATTTCCAATGGAAAAGTT
TCCACGACTGATACACAATTTTCTTATAAGAACATCATGAGGCTTCGATA
GCCAAAATGCGAAGACCAAGTTAAGAATATTAAGTCTTATATAAGTCTTT
CTGGACTCTAAAGCATAAAATTACTTAGAAAATTGCACTAAACTACTCAA
TGGAATCAATACAAAATGGTGAAATCATAAAAACATTTTAAGAACATTTT
AGGCCTTAAAACTCAAAATTTAAAAATTTCCAAAAGTCCGTAGAACTTTT
TGATGTTCTTATAAAAAAACATGTAATACACGTATTGAACGATGCATTTA
AAATTGAATTTACGTACGCGCATCGATCATTTCGCCACATTTCACTTATT
TCGTACGCGTTCATAGCATAATAAAGATTTTGAAACAATTTTTTTTAAAT
TAATTAAATTCAACATAAGATTTCCAAAAAAAGTTAATTACATTATTTAC
TATCTGCAATTTTCTTTAGTTCAAAGAAGACTATACACTTTCCATGCTGA
GATTAAATGTTTACAAGATTGAGTCGAGAAGGTCTAACTTTAACTTTTTA
TTTAAACATTTTGTCAATTTTGAGGGAAATGAGCATTTCTCATGATTGGG
TTGGTATTTTTTCTGATTTTTCGCACAATGATGAATAAAATAATCTGATG
GAGCCTGACTTACGAAAAAATAATTTTTTGGGCAAATTTGGGCCCCAAAG
TGGCTATAAATGGGGTGTGTAGAATTGAAAGTTTTTTTCTGATTTTTTTC
CAATGAAGACAGAGGGAAAGGTTCTCTAAAGAGGGGCTGAAACTTTTACC
CGGAAAATTATATCTGGCCGTAAAGAATATATTTTTGTATTCGGAGAAAT
TCCGTCAGTTTTAGGGAAAATGAGCGTTTCTCGCGATTGGCTTGATATTT
TTTCTGAATTTTTAGTCTGAATTTTCTATTTTCATTTTTTCTATTTTTTC
TTTTTTCTTATTGTATCATCCTTTCAGCATGTAGCTTGTTTGGGCTTAAT
AATTCACTTAACTCAATAGCATAGCTTAATGATATGGCAAGTTCTAATTA
CTAATAAGCCAAATTAACAACGAAGTTCGTCAAAAAAATCATCAAAAATA
AACTATTGGTTGGAACTACTCGGAATGACTTAATTTTTAATCTTGATAGT
TTTGTTATTCTCCTGGTATCAAAAGTTTGTTGAATAATATATCCGGGGGG
TGGACGGCCTTGACGGCCGACGGGGACGTGCCACTTGAGTTTAAAAAATG
GACTTTGTCAGAATGAAAAAACGAAAACTTTTTCTATTTTCACCCTGAAA
ATTGTCAAAAGTTACCAAAAGTCAATTCTGTCAGATACACATCTTGAAAA
TTAGTAAATTTGGGACCCTGATATCTTCAGAGCATAAAAAGGGACCCTGA
CCAGCGGCACGTCTGCGTACCGAATTTTACCTATGTGCTCCGAATAAATG
ACATTAAATCAGGAATCACAAAGATGTAAAAAGCGTTTAAAGTATTATAT
ATAAGAGCGTGAATCTCTAAAAAGACAAATCAAGAAAGGAAATAATGGAT
AAGAAAGATTATATATATTTTTTTTGAATTACAAAAATACACAGAAAATT
ACAGCTACAAAGAAAGTACAAAATGGTGCAAAATTACATGCGAATAATAA
TAAGTATCAAAGAAATGTTAATGTTTAAAAAATTCTAAATTGATTTGAAG
TAACTAACAATTCTCTCTGACATAAAAGTGACGTTTATACAAAATATTAT
GCATTTCGCTAGCATACGATAGCACTGAACATTAAAATTATTTTATTACA
AAAACATGGTACACAAAATAATTCATTTTTTGCACAAATCATCATTTATA
TGTTCGAAAAGTTCCTCACCAGTCTCAAAAGTTTTAGCGTTAAGATCATC
GAAACATCCCTCTCTCCTCTTCGATAAAAATTGCCGGTAGTATAAGTCTT
GCTTTTCAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002126-exon-sc0000018-1575043694:302299..302599 | TCONS_00002126-exon-sc0000018-1575043694:302299..302599 | Clytia hemisphaerica | exon |
| TCONS_00002126-exon-sc0000018-1575043694:293139..293194 | TCONS_00002126-exon-sc0000018-1575043694:293139..293194 | Clytia hemisphaerica | exon |
| TCONS_00002126-exon-sc0000018-1510915933:302299..302599 | TCONS_00002126-exon-sc0000018-1510915933:302299..302599 | Clytia hemisphaerica | exon |
| TCONS_00002126-exon-sc0000018-1510915933:293139..293194 | TCONS_00002126-exon-sc0000018-1510915933:293139..293194 | Clytia hemisphaerica | exon |
| TCONS_00002126-exon-sc0000018-1491911889:302299..302599 | TCONS_00002126-exon-sc0000018-1491911889:302299..302599 | Clytia hemisphaerica | exon |
| TCONS_00002126-exon-sc0000018-1491911889:293139..293194 | TCONS_00002126-exon-sc0000018-1491911889:293139..293194 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:293139..302599 - |
Blast
The following BLAST results are available for this feature:
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