TCONS_00002100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002100
Unique NameTCONS_00002100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002100 ID=TCONS_00002100|Name=TCONS_00002100|organism=Clytia hemisphaerica|type=transcript|length=2176bp
gtaaaaaaatgagactggcatctggcctttcctaccattccagagCCCAT
ATTTCCAGGAAACGCCTCAACCTTTCACAATTTGGTGAATAATaatctta
aatataagcaggttacttcaactaaatgggtttaacagtacttaattcct
attcaaaaactttttagactcattcagaaatcctactttgacaataattt
gcgctttaccgcaaaatttctaagtccaagtgttgTGATTAGCTTTAGAC
TGGGTGTACTTTCTATaataatactttattttttaataattatacaagct
tttacaaaaattaaacataCTTAGAAATACACACACTTCAATAATCATGA
AAAAGCTTATTGTTTTGATCAGTATGATATGCTTGACATTGTCAGAAATG
GAAGATGGAATTTCTGTACTTGTTCCAGCTGGAAGGTCAGATTGTTACTT
TCGTGAATTGAAAGTTGGAGATAGAATGGACCTTGAAATTCAGGTCTTAA
GTGGAGGGCACATTGATATCCATATTTTAGTATTATCGCCAACTGGCAGG
ATAATCTTAGACGAGCAAAGTGTCACAGAAACAAGTActgaaatcaaaat
tgatgaaaatggGGCATACAAAGTTTGCTTGGATAACACATTCAGCTTGA
GATCTGATAAAGTTGTATATTTTGATTTGGGTATTGATGAACACAATGGG
ACAACAGTAGATCATGCAGAATTATTTCAACAGATGCAATTAGAAAAAGA
CGAGATTGATAATACTAAGGATATTGCAAAATCGTTGGATAAGATTGAAA
TGATCTTTGAAACCATCCAAGAAATGCAGACGAGATTCAGAGCACGATAT
GCTCGACACCATTATTTACAAAATGCAAACATGACATTAGTTCAATGGTT
TTCCGGAGCTTCATGCTTCTTGATGATCATGGTTGGAGGACTCCAAGTGT
TTTTGATTAGAAACCTTTTTAAAGAGCAGAATGCGCAAAGAGGAATGAAA
GCTGGTCTTTGATGATTGGTTATAGTGTTCTTTTTAATAGCAAGTATGAG
ATCATCGTATGCATGTCCTTTAATTCACCGATCCGTATATCTACCCTTAC
AAGGTATTTATCCAAGCACTTTCCTTACCACTATTTTGgtctgaaattga
aaaaaactaaaaaaactaaaaaaaagttCACTGAAATTCCAAGTTCTGTC
TCAAGTGAAAGTCTTTGCCTTGACCATTTTAATATTCTACAAGCAATGAA
TTTGAGGGATGAGATCTTGCCTACTGTCACTCACAGGAAGGATTAAAGGA
CAAAAACACGAATTCAAaagaaataattagaaattcttttaaaatagTCG
TAATATATGGGTCTCAACCAAACCTAAACAAAGCATCCATAGATTTTTca
tcaagaatttttttaaacacccccttctctcagacccggtaggatttttt
cagccagtggggatagaaataacggactgaaactcgatggggattgatat
tcccatattttttatggctggtgatttcaattcttttgttttcaagtcag
aaaattcagtgggggttGGAAAAAGAGCATCATATTTtgtagtgaggatt
ggtttatttgattattttcagtggggacaaaaattggaggataatcttcc
actggggacgatattttggacaatttttcaagtgggaaggggttccagtg
ggtctgtgagaagggggtgttttaaagCATGTTCTGTTGTAATTTTGTGA
ACCATCTTTAGggttttttatgaattttagcAATTTCAAGGTTTCCACGA
TAAGCAATTTTTATATTCTTTATANggggttccagtgggtctgtgagaag
ggggtgttttaaagCATGTTCTGTTGTAATTTTGTGAACCATCTTTAGgg
ttttttatgaattttagcAATTTCAAGGTTTCCACGATAAGCAATTTTTA
TATTCTTTATAAATATACCTAGCATTAATtgtaatttataattttttcat
aACGATATTACTTACAATTTCtatcaattttgtatttttttgctaCCGAA
TACTGTTAACAATTTCAAAGAATAGTCGAAGTTATAGAAAAGATATTTTA
TAGAATTTAATATAATTTGTTCAATGttcaaaattataattttctcCCAT
CTCGATATTAGGAACTAAAACGTCAA
Run BLAST on NCBI

transcript from alignment at sc0000018:10386..13096-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002100 ID=TCONS_00002100|Name=TCONS_00002100|organism=Clytia hemisphaerica|type=transcript|length=2711bp|location=Sequence derived from alignment at sc0000018:10386..13096- (Clytia hemisphaerica)
GTAAAAAAATGAGACTGGCATCTGGCCTTTCCTACCATTCCAGAGCCCAT
ATTTCCAGGAAACGCCTCAACCTTTCACAATTTGGTGAATAATAATCTTA
AATATAAGCAGGTTACTTCAACTAAATGGGTTTAACAGTACTTAATTCCT
ATTCAAAAACTTTTTAGACTCATTCAGAAATCCTACTTTGACAATAATTT
GCGCTTTACCGCAAAATTTCTAAGTCCAAGTGTTGTGATTAGCTTTAGAC
TGGGTGTACTTTCTATAATAATACTTTATTTTTTAATAATTATACAAGCT
TTTACAAAAATTAAACATACTTAGAAATACACACACTTCAATAATCATGA
AAAAGCTTATTGTTTTGATCAGTATGATATGCTTGACATTGTCAGAAATG
GAAGATGGAATTTCTGTACTTGTTCCAGCTGGAAGGTCAGATTGTTACTT
TCGTGAATTGAAAGTTGGAGATAGAATGGACCTTGAAATTCAGGTAATCA
ATGATATTGCTTTTTTGGTGTCTTTGTTTTGCTGATTTATCTTTCTGGAA
ACTCTTAATCTTTTTTAGCTAGGTCTATTAAGAAAAAAACTGTGATTTTG
TGAATTTTTGTACCCTTATCAAGACCTTTTGTACCCTTATTTCCAAAAGT
CTAGTGTTTTGAGTTGTAAACATGGATTTTTTTTGCTGCTTTTGTGACGT
TAGCAGTTAGGATGAAAGTTTCAAAAGGCAAATGAAATAGAAATTAAAAT
TGATTAAAAGTGTTCTATTTTTTTATTATGACCAGGTCTTAAGTGGAGGG
CACATTGATATCCATATTTTAGTATTATCGCCAACTGGCAGGATAATCTT
AGACGAGCAAAGTGTCACAGAAACAAGTACTGAAATCAAAATTGATGAAA
ATGGGGCATACAAAGTTTGCTTGGATAACACATTCAGCTTGAGATCTGAT
AAAGTTGTATATTTTGATTTGGGTATTGATGAACACAATGGGACAACAGT
AGATCATGCAGAATTATTTCAACAGATGCAATTAGAAAAAGACGAGATTG
ATAATACTAAGGATATTGCAGTAAGTGAAGCCCTCTAAAACCAATCATAA
CATTTTTACAAGTTTCGACTTTAACATCAAAAAACAATTTAACGATTTTA
AGTAAATGAGTACGAAAGAAATTCCGAATAGTACATTATATACCAATTTT
AACATTTTTACGAGTTTCGACTTTGACATATTTAAAAAAAGAACAAATAT
TTCTCAGAAAGTATAAAGTTTTCTTAACTTTCAAATTTTTAATTTTCTTC
ATTTCACTCTTAGAAATCGTTGGATAAGATTGAAATGATCTTTGAAACCA
TCCAAGAAATGCAGACGAGATTCAGAGCACGATATGCTCGACACCATTAT
TTACAAAATGCAAACATGACATTAGTTCAATGGTTTTCCGGAGCTTCATG
CTTCTTGATGATCATGGTTGGAGGACTCCAAGTGTTTTTGATTAGAAACC
TTTTTAAAGAGCAGAATGCGCAAAGAGGAATGAAAGCTGGTCTTTGATGA
TTGGTTATAGTGTTCTTTTTAATAGCAAGTATGAGATCATCGTATGCATG
TCCTTTAATTCACCGATCCGTATATCTACCCTTACAAGGTATTTATCCAA
GCACTTTCCTTACCACTATTTTGGTCTGAAATTGAAAAAAACTAAAAAAA
CTAAAAAAAAGTTCACTGAAATTCCAAGTTCTGTCTCAAGTGAAAGTCTT
TGCCTTGACCATTTTAATATTCTACAAGCAATGAATTTGAGGGATGAGAT
CTTGCCTACTGTCACTCACAGGAAGGATTAAAGGACAAAAACACGAATTC
AAAAGAAATAATTAGAAATTCTTTTAAAATAGTCGTAATATATGGGTCTC
AACCAAACCTAAACAAAGCATCCATAGATTTTTCATCAAGAATTTTTTTA
AACACCCCCTTCTCTCAGACCCGGTAGGATTTTTTCAGCCAGTGGGGATA
GAAATAACGGACTGAAACTCGATGGGGATTGATATTCCCATATTTTTTAT
GGCTGGTGATTTCAATTCTTTTGTTTTCAAGTCAGAAAATTCAGTGGGGG
TTGGAAAAAGAGCATCATATTTTGTAGTGAGGATTGGTTTATTTGATTAT
TTTCAGTGGGGACAAAAATTGGAGGATAATCTTCCACTGGGGACGATATT
TTGGACAATTTTTCAAGTGGGAAGGGGTTCCAGTGGGTCTGTGAGAAGGG
GGTGTTTTAAAGCATGTTCTGTTGTAATTTTGTGAACCATCTTTAGGGTT
TTTTATGAATTTTAGCAATTTCAAGGTTTCCACGATAAGCAATTTTTATA
TTCTTTATANGGGGTTCCAGTGGGTCTGTGAGAAGGGGGTGTTTTAAAGC
ATGTTCTGTTGTAATTTTGTGAACCATCTTTAGGGTTTTTTATGAATTTT
AGCAATTTCAAGGTTTCCACGATAAGCAATTTTTATATTCTTTATAAATA
TACCTAGCATTAATTGTAATTTATAATTTTTTCATAACGATATTACTTAC
AATTTCTATCAATTTTGTATTTTTTTGCTACCGAATACTGTTAACAATTT
CAAAGAATAGTCGAAGTTATAGAAAAGATATTTTATAGAATTTAATATAA
TTTGTTCAATGTTCAAAATTATAATTTTCTCCCATCTCGATATTAGGAAC
TAAAACGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001099XLOC_001099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002100-exon-sc0000018-1575043694:12604..13096TCONS_00002100-exon-sc0000018-1575043694:12604..13096Clytia hemisphaericaexon
TCONS_00002100-exon-sc0000018-1575043694:12027..12311TCONS_00002100-exon-sc0000018-1575043694:12027..12311Clytia hemisphaericaexon
TCONS_00002100-exon-sc0000018-1575043694:10386..11783TCONS_00002100-exon-sc0000018-1575043694:10386..11783Clytia hemisphaericaexon
TCONS_00002100-exon-sc0000018-1510915933:12604..13096TCONS_00002100-exon-sc0000018-1510915933:12604..13096Clytia hemisphaericaexon
TCONS_00002100-exon-sc0000018-1510915933:12027..12311TCONS_00002100-exon-sc0000018-1510915933:12027..12311Clytia hemisphaericaexon
TCONS_00002100-exon-sc0000018-1510915933:10386..11783TCONS_00002100-exon-sc0000018-1510915933:10386..11783Clytia hemisphaericaexon
TCONS_00002100-exon-sc0000018-1491911889:12604..13096TCONS_00002100-exon-sc0000018-1491911889:12604..13096Clytia hemisphaericaexon
TCONS_00002100-exon-sc0000018-1491911889:12027..12311TCONS_00002100-exon-sc0000018-1491911889:12027..12311Clytia hemisphaericaexon
TCONS_00002100-exon-sc0000018-1491911889:10386..11783TCONS_00002100-exon-sc0000018-1491911889:10386..11783Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:10386..13096 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.5049	16.0673	6.0731	5.98456	12.1809	8.27342	10.5366	13.4475	8.36009	8.55133	9.30137	5.46325	9.39162	7.91186	8.96509	7.75814	10.038	10.2785	7.2934	9.71621	8.37751	8.68759	15.2364	15.5127	10.42	11.5728	9.15933	5.8727	19.5807	18.9781
Blast
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BLAST of TCONS_00002100 vs. Swiss-Prot (Human)
Match: TMED5 (Transmembrane emp24 domain-containing protein 5 OS=Homo sapiens GN=TMED5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.337e-20
Identity = 56/199 (28.14%), Postives = 112/199 (56.28%), Query Frame = 2 
Query:  398 MEDGISVLVPAGRSDCYFRELKVGDRMDLEIQVLSGGHIDIHILVLSPTGRIILDEQSVTETSTEIKIDENGAYKVCLDNTFSLRSDKVVYFDLGIDEHNGTTVDHAELFQQMQLEKDEID-NTKDIAKSLDKIEMIFETIQEMQTRFRARYARHHYLQNANMTLVQWFSGASCFLMIMVGGLQVFLIRNLFKEQNAQR 991
            ++   +  +PAG+ +C+++ + +   +++E QVL G  +DI   + SP G+ ++ EQ  ++    ++  E G Y  C DNTFS  S+KV++F+L +D + G      E +++     D +D   +DI +S++ I+        +QT  RA  AR   +Q +N   V ++S  +  +M++V  +QV+++++LF+++   R
Sbjct:   32 LDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVET-EVGDYMFCFDNTFSTISEKVIFFELILD-NMGEQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLFEDKRKSR 228
The following BLAST results are available for this feature:
BLAST of TCONS_00002100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMED54.337e-2028.14Transmembrane emp24 domain-containing protein 5 OS... [more]
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