TCONS_00002098 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002098
Unique Name	TCONS_00002098
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1143

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000018:1030047..1034774+
coding sequence from alignment at sc0000018:1030047..1034774+

transcript sequence

>TCONS_00002098 ID=TCONS_00002098|Name=TCONS_00002098|organism=Clytia hemisphaerica|type=transcript|length=1143bp
AATATCCTTGAAGGATGAAGGAAAAGGTGAATAAAAACTGCTTTGCttat
gtatattcgcttcgcaaataGTTATTGGTTGTGTAAAGCTGATGGGTATT
CAAGTCATCAGTAATAAACATTTCCATTGCTCTTCTTGGAATCAggttta
aagattttaaataaTTAATACCCCACACCCAAGATGGCTGAAGTTTTGGA
GGATGAAGTTAAAGAAACTTAGTTTTTAATTTATCCTAATAtccatttta
attttcaatagcTATGTAACATCAAAAGCTTAAAAACATACTCAAAAAAG
ACATaatataaaaactaaaaaatatctGTAAGATGGCTTATTACACCACA
AAGTCAACTTTACCACCATCATACATGCCAAGACTCTACAAATTACCTGC
AGTAAAGGAATGTTTATATCATCCAAGCTTACCAACCTTTCGCAGGATGG
ATATTGATACAGCAGCTCATAAACTTCCTGATGAACATTGTCGAACAACA
TCTTTATATGAATCAGAACATTTCAAAAATGCAACAGTTTCATTATACAA
ACCACCAAGAAGACCACTTGCTTGTGCAACTGTTACAGAAACTGGTAAAA
ATCAGCTTGATTATAAAGTCTCTTGTCCACAATCGTCGATTCAAAAGCAA
CACGAAAAGTCAGATGAGAATGATCGATTATCACATTCGGGATATTCCAT
GCGTTATCTGTCGCCAGCTGTCACTGGATCATGGAAGTATTCGTTGCGCC
AAGAACCTTACATAGACAAACAGGGGCAGAGACCTATCCCTGCCAATATC
TTTAGCAGACATCGACCTCAAGTACGAAGTAGTCATGGAATAACAGCTGG
TGCTGTAGCATGGAAACCTTGATCAACCAACAGACTACATTGAGCGTACC
TTGAAAACGGATCTATGATACTTTACGATAGCTTTTTTTTAGGATTGATT
TTTTTACTGgcggattttatttttttacatattatgAATAACATAGTAAT
ATAAATGTGTAGATAGAAAAGAGAACTAACAATTTGGATTGCAATCAATT
TTCATATTTGTTTCTTCCTCCTCGTTTTCAAATCGATGTCGCGTGAATCG
TAACGGCGACCGGGGTTTTCACGTATCGAAGATCCAGTAGAAT

Run BLAST on NCBI

protein sequence of TCONS_00002098-protein

>TCONS_00002098-protein ID=TCONS_00002098-protein|Name=TCONS_00002098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MAYYTTKSTLPPSYMPRLYKLPAVKECLYHPSLPTFRRMDIDTAAHKLPD
EHCRTTSLYESEHFKNATVSLYKPPRRPLACATVTETGKNQLDYKVSCPQ
SSIQKQHEKSDENDRLSHSGYSMRYLSPAVTGSWKYSLRQEPYIDKQGQR
PIPANIFSRHRPQVRSSHGITAGAVAWKP

Run BLAST on NCBI

transcript from alignment at sc0000018:1030047..1034774+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002098 ID=TCONS_00002098|Name=TCONS_00002098|organism=Clytia hemisphaerica|type=transcript|length=4728bp|location=Sequence derived from alignment at sc0000018:1030047..1034774+ (Clytia hemisphaerica)
AATATCCTTGAAGGATGAAGGAAAAGGTGAATAAAAACTGCTTTGCttat
gtatattcgcttcgcaaataGTTATTGGTTGTGTAAAGCTGATGGGTATT
CAAGTCATCAGTAATAAACATTTCCATTGCTCTTCTTGGAATCAggttta
aagattttaaataaTTAATACCCCACACCCAAGATGGCTGAAGTTTTGGA
GGATGAAGTTAAAGAAACTTAGTTTTTAATTTATCCTAATAtccatttta
attttcaatagcTATGTAACATCAAAAGCTTAAAAACATACTCAAAAAAG
ACATaatataaaaactaaaaaatatctGTAAGATGGCTTATTACACCACA
AAGTCAACTTTACCACCATCATACATGCCAAGACTCTACAAATTACCTGC
AGTAAAGGAATGTTTATATCATCCAAGCTTACCAACCTTTCGCAGGATGG
ATATTGATACAGCAGCTCATAAACTTCCTGATGAACATTGTCGAACAACA
TCTTTATATGAATCAGGTACATGCATTTAAAATTCACAATTCTTTTTTTA
GGGAGAACTCTCTAGAACTTTTGGGAGAGATTttatcagcaaaaattttt
catGCCATAGAATCTGTCTGATTTCTCCACCCGTTACCCGTTAGGGTGAT
TATTTTGTGTTACTAAAAATGAACCAACTATTATTATTGTCATAGttgtt
attatttattttttttggtaaagaaGGTCAATGCAAATAAACAGGCAGTG
AAAAGTTACTGATCTGAACCtaaaagctaaaattttaaaCTACTATTAGG
CAAGACCAATATGATTAGTTGTTTTTCAGTCGGGCCTGACcccaaaattc
caaaaatcgaattaaaaataaaatttactttgatAGTACATTTCCATTTT
CATTGCTATActacagactgccaaattttctaaattttggtagttctttc
aagattttgaagattttactgTATGTTCAAtgttcattttatccatgaat
tcaagatttttttgtctttttattttctatttaagATAttgtagtttttg
ctgcctttttgtactgtaggagattttatagttgtatacttttttattta
ttctaacgccaaccgaccgaccctctttttggggtagcttggcccgtaaa
acaacaaattaaattggccttgCCTTATTAAGTTTAAATAAGTTAAGATT
TAtgaaacaatttaaaaacattatgaTTATGAATTGaagaatataaatat
aaatattattGAGGGTAACGTCAAAATCTTGTGTTCTCACAAATTTACTT
AAATTGCATAGATTTAGAATATTGATATTTTACTGAAAACAGCCATGAAC
TGTTCACAATATATGTGATTTATATATGgtgatttttctctttttacagA
ACATTTCAAAAATGCAACAGTTTCATTATACAAACCACCAAGAAGACCAC
TTGCTTGTGCAGTAAGTTTAATTGCTCCAGTTTTTCTATTTGGTTAGAAC
AGCAACAGACAAAGCGGAGTTTTTTATTGACCAAATGCCAGATGTCTTGT
TATCAGTTATCAGCCGTAggataaaaagttttttattttacaggGGGGTT
TGCTGTTCTAGTTTCtaacttcaaattttatttGGATGCACTGAAAATTC
CAAGGGCTTTTTGTGGCCGTTATACGGCCAAAATACGCAATTTTGAATCG
AGTTTCAAAActaaatatttagaaaaattttgattgtgttaaaatatttc
aaaaaaatgaagatgcGAAATTAGAATGTATTGTCTCTATgatgtttgaa
aataaattcaattcaaaacatttctttttatcTTCGCAAatacaatgttt
aatccttggTAATAAACCCTTCATAATTACCCTAGTGggggtttaaaatt
tttttttgcagctGCAGCGTGTATTGTCCATCTACAATGGTTACTCCGAA
GgccaaaactcaatttctaagtCAAAAAACGGCCAGTAAtcaaagtgctt
ggaattttgctTGGGATGGGCtatgatttttcagaatttttcttggACAC
ATCATCCCTAAACCTTCTTCCTTCTTTTTCAGACTGTTACAGAAACTGGT
AAAAATCAGCTTGATTATAAAGTCTCTTGTCCACAATCGTCGATTCAAAA
GCAACACGAAAAGTCAGGTAATCTTTACCACATTCTATCCACAGGTATCA
TTATCCTTTATACACTTGAATGCCTACTTCTCGCAGCTTTATGTTCGATT
AGCCATGTTGTTTTGTCTTTTtcgctacatgtttttttataagcattacg
cttataagcatatctaggctcaaaTATGGCAAAATTTTATGCATATGCTA
AGCATGACTGAGCCTAAGAAAAGTTTATTGTCctgattttggctgttttt
ggctgagattttgcggatttttggaattttcccaaaattctgCTTGGGAT
ATTAGCATCCTCATAAGCATTTTTCAACCTTTTCAAGCCATTGACCTAAG
CATCTACGAGcctgtttttgaatttttgcatgcttataaaaaacatatgT
AGATTTTAGAACATTCGAGTTTAAAAACATTTGGATGTTGAACAGGATGC
TGCCAATACAGAAGAATTTAAGGCGAATTAAATGAACTTCGAATTAACAC
TATCACAAACATTGTTTAACAGGGAGGTAGAATAAGAGTGTCTCgggaga
aatttttttcaaagaaatcagTGGAGGCCCTTTATATTGTCTTTGTGTTC
TTTTAGATGAGAATGATCGATTATCACATTCGGGATATTCCATGCGTTAT
CTGTCGCCAGCTGTCACTGGATCATGGAAGGTAGAGTTGGTTGCTCTATT
TATTAATAATACCAGTTTGAGATTAGAATATTATaagattttagaattta
aaatgcATAACGCAGGACGTAGGGTTAAAAGGATACGGGTGATTTAGAGA
ATCTTCTGGAATCTGTTGtttatctaattaaaaaaataactaTTTTCGTA
GACGTCAATAATATCCTTCTGAAATACGTAcataaaaaaactaaatacct
taggtggataaattttcgcgtgcaGATATTTGcgctaaacatttttttca
aaaataattcaatttttgcgggaatttaattttgcgaatcgGCCTCTCTT
TCAactaatttctttaattttcctgggggttttggcaaaaaatctAACTA
aggtttttggcaaaaatcctGGTTCAAAAACTTTCTCAAGCGTTAAATTT
CGtgaattttctttagattcTGAGATCTATTTTCGAAcactttcttcatt
ttctatttgaagtttcattttaatgttttcttttcgtCTATAGTATTCGT
TGCGCCAAGAACCTTACATAGACAAACAGGGGCAGAGACCTATCCCTGCC
AATATCTTGTAAGTCGTTAATGGCTGGgaagtttttttctgaatttactT
TAATCATTTTTTGACACAAATTTAGCTGCAATATAGCATTTAACTGCTTT
TAGCAACTCGATAAACTTACTTTTTTTGGGAATGATAAGCTTTTGGTATT
TCaaactttgtaaaaatatttaggaGGTTCAAGGCTAACAAGGGAAATTC
ACggttttttcgtgttttttttgcTGAGATTTATAATCCGACTATATTAT
TTCTTATAGTAGCAGACATCGACCTCAAGTACGAAGTAGTCATGGAATAA
CGTAAGTCTATTAATTACTTATTTTTTGGCCTTTCAACAATAAAGTTATA
TTTTACGCGATTATTTTCAACTCACAGTTGAGCGCTAAAATCCCAAAATG
CTCATTGTGTCCGTTTTTTATGTTCGTaactttgttcaaaaagtgacAAA
CCATCTTGCCCGTCAGTAATAGACGAGAGCTTATAAATATACATTAATGG
AACCAAacgaatgaaaatttttttatttttttttaaaatgagCATTATAA
AATGTAGTCAAACTTCGATTAATCCTTGGAAACAAGGATACATAGTAGAA
TTTTAATCAAAGTTTTACTCTTATATTCTTCCAAATCTTAACTCATGAGC
TCCTGAACTTTTTTGAAACCCAATCGAACTTGTTAACTTTACTACAAAAC
TCGTCAAGGTGCGACCACAATTTCTAATAATGAGCTTGAAGTCTAAATGG
TAATCTTTCATAGCTCAAGAGTAAGCTAGCAATAAAAATGTTAACCATTA
TTCGTGGCCACACGATCGAATTTAATTTGGAGTACAATGGaatctttgaa
aatcgaataccTCCTTatctcgaacaagttttatgttCCCTTCAGTTAGC
ATTGCCTTATAAACCAGAAATTTCCAgaacttgaacaaatttgtgtcccC
CGTACGTGTTCGACTTATGGAGACTGGATATTTGATCCGTTCATGGCACT
GTAAAATCAACGTGCTCAATTTCTTTCAGAGCTGGTGCTGTAGCATGGAA
ACCTTGATCAACCAACAGACTACATTGAGCGTACCTTGAAAACGGATCTA
TGATACTTTACGATAGCTTTTTTTTAGGATTGATTTTTTTACTGgcggat
tttatttttttacatattatgAATAACATAGTAATATAAATGTGTAGATA
GAAAAGAGAACTAACAATTTGGATTGCAATCAATTTTCATATTTGTTTCT
TCCTCCTCGTTTTCAAATCGATGTCGCGTGAATCGTAACGGCGACCGGGG
TTTTCACGTATCGAAGATCCAGTAGAAT

Coding sequence (CDS) from alignment at sc0000018:1030047..1034774+

>TCONS_00002098 ID=TCONS_00002098|Name=TCONS_00002098|organism=Clytia hemisphaerica|type=CDS|length=3780bp|location=Sequence derived from alignment at sc0000018:1030047..1034774+ (Clytia hemisphaerica)
ATGGCTTATTACACCACAAAGTCAACTTTACCACCATCATACATGCCAAG
ACTCTACAAATTACCTGCAGTAAAGGAATGTTTATATCATCCAAGCTTAC
CAACCTTTCGCAGGATGGATATTGATACAGCAGCTCATAAACTTCCTGAT
GAACATTGTCGAACAACATCTTTATATGAATCAGAACATTTCAAAAATGC
AACAGTTTCATTATACAAACCACCAAGAAGACCACTTGCTTGTGCAACTG
TTACAGAAACTGGTAAAAATCAGCTTGATTATAAAGTCTCTTGTCCACAA
TCGTCGATTCAAAAGCAACACGAAAAGTCAGATGAGAATGATCGATTATC
ACATTCGGGATATTCCATGCGTTATCTGTCGCCAGCTGTCACTGGATCAT
GGAAGTATTCGTTGCGCCAAGAACCTTACATAGACAAACAGGGGCAGAGA
CCTATCCCTGCCAATATCTTTAGCAGACATCGACCTCAAGTACGAAGTAG
TCATGGAATAACAGCTGGTGCTGTAGCATGGAAACCTTGAATGGCTTATT
ACACCACAAAGTCAACTTTACCACCATCATACATGCCAAGACTCTACAAA
TTACCTGCAGTAAAGGAATGTTTATATCATCCAAGCTTACCAACCTTTCG
CAGGATGGATATTGATACAGCAGCTCATAAACTTCCTGATGAACATTGTC
GAACAACATCTTTATATGAATCAGAACATTTCAAAAATGCAACAGTTTCA
TTATACAAACCACCAAGAAGACCACTTGCTTGTGCAACTGTTACAGAAAC
TGGTAAAAATCAGCTTGATTATAAAGTCTCTTGTCCACAATCGTCGATTC
AAAAGCAACACGAAAAGTCAGATGAGAATGATCGATTATCACATTCGGGA
TATTCCATGCGTTATCTGTCGCCAGCTGTCACTGGATCATGGAAGTATTC
GTTGCGCCAAGAACCTTACATAGACAAACAGGGGCAGAGACCTATCCCTG
CCAATATCTTTAGCAGACATCGACCTCAAGTACGAAGTAGTCATGGAATA
ACAGCTGGTGCTGTAGCATGGAAACCTTGAATGGCTTATTACACCACAAA
GTCAACTTTACCACCATCATACATGCCAAGACTCTACAAATTACCTGCAG
TAAAGGAATGTTTATATCATCCAAGCTTACCAACCTTTCGCAGGATGGAT
ATTGATACAGCAGCTCATAAACTTCCTGATGAACATTGTCGAACAACATC
TTTATATGAATCAGAACATTTCAAAAATGCAACAGTTTCATTATACAAAC
CACCAAGAAGACCACTTGCTTGTGCAACTGTTACAGAAACTGGTAAAAAT
CAGCTTGATTATAAAGTCTCTTGTCCACAATCGTCGATTCAAAAGCAACA
CGAAAAGTCAGATGAGAATGATCGATTATCACATTCGGGATATTCCATGC
GTTATCTGTCGCCAGCTGTCACTGGATCATGGAAGTATTCGTTGCGCCAA
GAACCTTACATAGACAAACAGGGGCAGAGACCTATCCCTGCCAATATCTT
TAGCAGACATCGACCTCAAGTACGAAGTAGTCATGGAATAACAGCTGGTG
CTGTAGCATGGAAACCTTGAATGGCTTATTACACCACAAAGTCAACTTTA
CCACCATCATACATGCCAAGACTCTACAAATTACCTGCAGTAAAGGAATG
TTTATATCATCCAAGCTTACCAACCTTTCGCAGGATGGATATTGATACAG
CAGCTCATAAACTTCCTGATGAACATTGTCGAACAACATCTTTATATGAA
TCAGAACATTTCAAAAATGCAACAGTTTCATTATACAAACCACCAAGAAG
ACCACTTGCTTGTGCAACTGTTACAGAAACTGGTAAAAATCAGCTTGATT
ATAAAGTCTCTTGTCCACAATCGTCGATTCAAAAGCAACACGAAAAGTCA
GATGAGAATGATCGATTATCACATTCGGGATATTCCATGCGTTATCTGTC
GCCAGCTGTCACTGGATCATGGAAGTATTCGTTGCGCCAAGAACCTTACA
TAGACAAACAGGGGCAGAGACCTATCCCTGCCAATATCTTTAGCAGACAT
CGACCTCAAGTACGAAGTAGTCATGGAATAACAGCTGGTGCTGTAGCATG
GAAACCTTGAATGGCTTATTACACCACAAAGTCAACTTTACCACCATCAT
ACATGCCAAGACTCTACAAATTACCTGCAGTAAAGGAATGTTTATATCAT
CCAAGCTTACCAACCTTTCGCAGGATGGATATTGATACAGCAGCTCATAA
ACTTCCTGATGAACATTGTCGAACAACATCTTTATATGAATCAGAACATT
TCAAAAATGCAACAGTTTCATTATACAAACCACCAAGAAGACCACTTGCT
TGTGCAACTGTTACAGAAACTGGTAAAAATCAGCTTGATTATAAAGTCTC
TTGTCCACAATCGTCGATTCAAAAGCAACACGAAAAGTCAGATGAGAATG
ATCGATTATCACATTCGGGATATTCCATGCGTTATCTGTCGCCAGCTGTC
ACTGGATCATGGAAGTATTCGTTGCGCCAAGAACCTTACATAGACAAACA
GGGGCAGAGACCTATCCCTGCCAATATCTTTAGCAGACATCGACCTCAAG
TACGAAGTAGTCATGGAATAACAGCTGGTGCTGTAGCATGGAAACCTTGA
ATGGCTTATTACACCACAAAGTCAACTTTACCACCATCATACATGCCAAG
ACTCTACAAATTACCTGCAGTAAAGGAATGTTTATATCATCCAAGCTTAC
CAACCTTTCGCAGGATGGATATTGATACAGCAGCTCATAAACTTCCTGAT
GAACATTGTCGAACAACATCTTTATATGAATCAGAACATTTCAAAAATGC
AACAGTTTCATTATACAAACCACCAAGAAGACCACTTGCTTGTGCAACTG
TTACAGAAACTGGTAAAAATCAGCTTGATTATAAAGTCTCTTGTCCACAA
TCGTCGATTCAAAAGCAACACGAAAAGTCAGATGAGAATGATCGATTATC
ACATTCGGGATATTCCATGCGTTATCTGTCGCCAGCTGTCACTGGATCAT
GGAAGTATTCGTTGCGCCAAGAACCTTACATAGACAAACAGGGGCAGAGA
CCTATCCCTGCCAATATCTTTAGCAGACATCGACCTCAAGTACGAAGTAG
TCATGGAATAACAGCTGGTGCTGTAGCATGGAAACCTTGAATGGCTTATT
ACACCACAAAGTCAACTTTACCACCATCATACATGCCAAGACTCTACAAA
TTACCTGCAGTAAAGGAATGTTTATATCATCCAAGCTTACCAACCTTTCG
CAGGATGGATATTGATACAGCAGCTCATAAACTTCCTGATGAACATTGTC
GAACAACATCTTTATATGAATCAGAACATTTCAAAAATGCAACAGTTTCA
TTATACAAACCACCAAGAAGACCACTTGCTTGTGCAACTGTTACAGAAAC
TGGTAAAAATCAGCTTGATTATAAAGTCTCTTGTCCACAATCGTCGATTC
AAAAGCAACACGAAAAGTCAGATGAGAATGATCGATTATCACATTCGGGA
TATTCCATGCGTTATCTGTCGCCAGCTGTCACTGGATCATGGAAGTATTC
GTTGCGCCAAGAACCTTACATAGACAAACAGGGGCAGAGACCTATCCCTG
CCAATATCTTTAGCAGACATCGACCTCAAGTACGAAGTAGTCATGGAATA
ACAGCTGGTGCTGTAGCATGGAAACCTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001097	XLOC_001097	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002098-protein	TCONS_00002098-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000018	supercontig	sc0000018:1030047..1034774 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.6592	51.8946	38.9225	37.0697	277.432	210.123	123.114	121.201	55.7917	56.1817	65.8455	81.7366	2.80413	3.20071	5.99618	6.85146	5.67448	6.13766	2.74575	2.11267	7.93277	7.36247	23.9103	24.1533	156.401	106.171	15.4691	16.8426	25.4225	22.8947

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00002098 vs. Swiss-Prot (Human)

BLAST of TCONS_00002098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00002098 (transcript) - C. hemisphaerica