TCONS_00002096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002096
Unique NameTCONS_00002096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002096 ID=TCONS_00002096|Name=TCONS_00002096|organism=Clytia hemisphaerica|type=transcript|length=577bp
TTTTAGGCCTAAATATGAAACAAATAAGATAATCGTTTATCATAACAAGG
ATTGGTTTGAAAGtgtgtaatttttatttatcagTGGGAAGAGCGCTTGT
TGAACCGTCAATATGAAATTCAACTTGTCAATGTTGATGGTGTTCGCGAA
GAAATGGAAAATCTTCTTAGGAATCGCACTAgctttgattttgattggtt
tagCTATGGTTATATCTGGTTCCACATTATTAAGCCGGGCAGCTAAGGAT
TCAGAGGCAGGATTTACGGCGTTATTAGTATTTGGTGTGATTTTCTTCGT
CATTGGTATCATCTTAACCGTCATCACTATCGTCATCAAACGCAAGAAAG
ACTCTTTATTTCCTGGACTCAAATGAAACCATTTAGTTATTTTTAGAACT
TATCTTTTATGCTTTccataaatttgtattttacattCAGAAAAAGCTTA
ATATCCCTACATTAAAGTgtgaaaaataaagtttttcgagaatttgacca
ttttttgccttCTTATCGacgattttttaaagaaaatgtacGGAAAGGTC
GATTTCTAGCCAGAGCCTACAATAAAG
Run BLAST on NCBI

transcript from alignment at sc0000018:988642..990198+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002096 ID=TCONS_00002096|Name=TCONS_00002096|organism=Clytia hemisphaerica|type=transcript|length=1557bp|location=Sequence derived from alignment at sc0000018:988642..990198+ (Clytia hemisphaerica)
TTTTAGGCCTAAATATGAAACAAATAAGATAATCGTTTATCATAACAAGG ATTGGTTTGAAAGtgtgtaatttttatttatcagTGGGAAGAGCGCTTGT TGAACCGTCAATATGAAATGTAGGTACATCATTTTCAATATTAGCCTGTA TATATTcaattattgtattattttgatgtttctgcTATTTAAAGCTTAGC CTACCTAGATGCTTGTAAACCAAGAATCGAAATTAGCCTTACTTTTAGCA ATAAAAGGCAACCACTTAAAGAGGCCACNTAATCGGAATTAGCCTTACTT TTAGCAATAAAAGGCGCTCACTTAAAGAGGCCACTCCCAGCGGTaagtct gatcacgatatcacgcaattcTTTGTTTTCAACCCCGATCACGAAAGTCC AGCAAAAATTTGGATAATCACgcattcctttgaaaaagtccaaatcacgc cctcacagctcaaaaatctttcaaatcacgatcacgttttgacctctgat cacgcaatcacgaaaaaaattttccaaatcacaTTAATCACGTTACAAAA ATCCCTATCTCACCATCATGAAAACCGCTCGGTGGGCCTCTTTAAACCGA ATAGATTTTAATTCAGAAGGCTTTTTAACCGTTAGAAACTCTTATTTCAC TCTGTATTATCCCTCTCCATTTAATTTTAGTCAACTTGTCAATGTTGATG GTGTTCGCGAAGAAATGGAAAATCTTCTTAGGAATCGCACTAgctttgat tttgattggtttagCTATGGTTATATCTGGTTCCACATTATTAAGCCGGG CAGCTAAGGTAAATATATTTACCTATCTGACATTAAACGTGATTTTGAGA TTGAGGATTTGTTGAAGATAAGCTGGTTCTGGCAGTTTCATTAGAACTTA AAACTATCAAATATGATTGATATGGAAGCCCTAATAAGTTTGataaatag accttatcggagttttttatttttctaaacaagcgatgcattgtgggatt gtttcgggagtatttcaatagaaatctcttaggaattcctcgagggaatt ctattgtaatactcccgaaacaatcccacaatgcatcgctatttttttct tgccgAAACTGTAGAGAAACTGTTAGAGTTAAAGAGTCATTCAAGTTGTA AAAGTCCCATTTCTAGAGACTCCCTGTAATCATGAAACAATTCCTTATTA TAATTTTCTCTCCCCTTTCATTTACAGGATTCAGAGGCAGGATTTACGGC GTTATTAGTATTTGGTGTGATTTTCTTCGTCATTGGTATCATCTTAACCG TCATCACTATCGTCATCAAACGCAAGAAAGACTCTTTATTTCCTGGACTC AAATGAAACCATTTAGTTATTTTTAGAACTTATCTTTTATGCTTTccata aatttgtattttacattCAGAAAAAGCTTAATATCCCTACATTAAAGTgt gaaaaataaagtttttcgagaatttgaccattttttgccttCTTATCGac gattttttaaagaaaatgtacGGAAAGGTCGATTTCTAGCCAGAGCCTAC AATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001096XLOC_001096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002096-exon-sc0000018-1491911889:988642..988760TCONS_00002096-exon-sc0000018-1491911889:988642..988760Clytia hemisphaericaexon
TCONS_00002096-exon-sc0000018-1510915933:988642..988760TCONS_00002096-exon-sc0000018-1510915933:988642..988760Clytia hemisphaericaexon
TCONS_00002096-exon-sc0000018-1575043694:988642..988760TCONS_00002096-exon-sc0000018-1575043694:988642..988760Clytia hemisphaericaexon
TCONS_00002096-exon-sc0000018-1491911889:989322..989449TCONS_00002096-exon-sc0000018-1491911889:989322..989449Clytia hemisphaericaexon
TCONS_00002096-exon-sc0000018-1510915933:989322..989449TCONS_00002096-exon-sc0000018-1510915933:989322..989449Clytia hemisphaericaexon
TCONS_00002096-exon-sc0000018-1575043694:989322..989449TCONS_00002096-exon-sc0000018-1575043694:989322..989449Clytia hemisphaericaexon
TCONS_00002096-exon-sc0000018-1491911889:989869..990198TCONS_00002096-exon-sc0000018-1491911889:989869..990198Clytia hemisphaericaexon
TCONS_00002096-exon-sc0000018-1510915933:989869..990198TCONS_00002096-exon-sc0000018-1510915933:989869..990198Clytia hemisphaericaexon
TCONS_00002096-exon-sc0000018-1575043694:989869..990198TCONS_00002096-exon-sc0000018-1575043694:989869..990198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:988642..990198 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231861 1.33644 0.366919 0.432715 0.736057 0 28.6316 31.214 65.8356 45.6765 37.0165 32.263 2.09439 1.75225 0 0 4.28519 5.19255 2.45245 2.3593 17.9899 17.7001 9.7471 12.0072 15.9402 14.3186 2.58756 0.677829 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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