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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002089 ID=TCONS_00002089|Name=TCONS_00002089|organism=Clytia hemisphaerica|type=transcript|length=1662bpRun BLAST on NCBI protein sequence of TCONS_00002089-protein >TCONS_00002089-protein ID=TCONS_00002089-protein|Name=TCONS_00002089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp MAASVQSSSELDLSSIGDGIDEEPLGDLTDEELFELVQKTMRANEILKIERun BLAST on NCBI transcript from alignment at sc0000018:900304..916522+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002089 ID=TCONS_00002089|Name=TCONS_00002089|organism=Clytia hemisphaerica|type=transcript|length=16219bp|location=Sequence derived from alignment at sc0000018:900304..916522+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:900304..916522+ >TCONS_00002089 ID=TCONS_00002089|Name=TCONS_00002089|organism=Clytia hemisphaerica|type=CDS|length=14040bp|location=Sequence derived from alignment at sc0000018:900304..916522+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002089 vs. Swiss-Prot (Human)
Match: CC113 (Coiled-coil domain-containing protein 113 OS=Homo sapiens GN=CCDC113 PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 6.017e-71 Identity = 145/341 (42.52%), Postives = 225/341 (65.98%), Query Frame = 1
Query: 169 ELFELVQKTMRANEILKIETKMFESHLKRVDPKDLTGQNAGSIQSVPDPVATKTFRKRSRSRGHSIDRNLKLSAEQKCDIATRELEELRESIDKMKEVAEKKLDNFKAIMEEADIRHSEVKKTQYEFKRDVVNGAVNPRNGRVIA-EKLVRSVEDKLRSRDTLIEKLRLKNSTXXXXXXXXXXXXXXXEEMGEVLHEVDFNQLKIENSQYLEKIDERNQDLLRLKLMATNVLQILNTYKKKLSSLTMESDRLNSEITMRKDLFSKIEAEMKLVDEEKSTAEEVNRKCKTQLQDFKVPEVMEYVHEKAELYELRKAVSSWERKVEITSMALKTHLKTWQKLK 1188
+L LV++ N LK ET+MFE + +++P+D I+ A R+RS+SR +DR + L+A+QK ++ +E+ ++++ + + AE+ L + +AI+EEA+IR SEV + +EF++D++ A++ + G ++A +K+++ +ED R RD + EKLRLKN +LKV +KK+ LQL+QKEE+ E LH+VDF QLKIEN+Q+LE I+ RNQ+L +LKL + N LQ+LN YK KL L+ EI +RK+L KIE E V+E+++ AE VN++ + QL +F+ P+VM YV EK +L K++ WERKVEI M+LK H K W ++K
Sbjct: 25 QLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQRPPRLSEIKISAADYAQFRGRRRSKSRT-GMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILK-AISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMK 363 The following BLAST results are available for this feature:
BLAST of TCONS_00002089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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