TCONS_00002086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002086
Unique NameTCONS_00002086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002086 ID=TCONS_00002086|Name=TCONS_00002086|organism=Clytia hemisphaerica|type=transcript|length=2703bp
aaaaatgacaattttgatgacgtcagcatttttactaaGAGCGATAAATT
GGAACATCGACATGCTCATCATGTAGCCCTGATAAGgggctttcagaaaa
atatatagtttaatatgtttagatcagccgttggcgagatataacgattt
taaaatcgtttaaaacgcttatttttgctgagtcagcactttttttcgat
tttaaaatcGTTATATCTCGCCAACGGTTGGTTTAAACATactaaaccat
atatttttctgaaagcccaTGATCAGGGCTACATGATTAAATTATCGACG
TTCCAATTTATCAATCTCAGTAAAAATGCggacgtcatcaaaatcgtcat
tttttggactttagaggTCATATCTCGGGACAACGTGGTCCAAATatcaa
aagtgaccccattttctttatttactcATCGAGAGCAATCTCCCTGTATA
gctatttttgacatttgaaaaacattaaaaatcagttctcaagggtcccc
ccttgattaattgtagaaaaaagaACCATGTCCGCCATTATCAATTTGAG
GGTtttcccatcttcctgggggtggggcttttttttggtgattcctgaca
tgttcctggacctatgtgcaaaatttcatctctacaccatttttgTCCCG
GTATTGGTGGTTTATgacctaattctacctgactaataCTTTATTTTAGG
TGTAAAAAAACAAGTTTAATTTAATGGGTGTTTTGCCCAGCCCAACCCAT
GTTTCTTAGGTAGGAGAACATTTAACGCGCATTAATGATGCACCTACAAA
GAGCCAAAAGTATTCCAAATGGACCTTGTTGTAAAGTTGTACGAATACCG
TGACGAATATCTTTTGAATAATGACATTGAAAAAGCTATTGATAAACCAA
ATGATGTGAAAGAAAAAGCCAAGGAAGCTCTTTGTGAGCTTGACAGTTTA
CAACTTTCCATAAGTGAAAAAGCCATCTTCTTTGGTCTCCGTGGAAAGAT
ACTAAACATTTCACAAGACTATGACAGTCGAGCGGCAGAATGTCTTTCCA
AAGCTCTGAAATTGAATCCAAATCTTATTGATGCATGGAATGAGCTTGGT
GAAAGTTANGGCAGAATGTCTTTCAAAAGCTCTGAAATTGAATCCAAATC
TTATTGATGCATGGAATGAGCTTGGTGAAAGTTATTGgaaaaacaaagat
atagaTGCAGCATACAACTGCTTTACACAAGCCAACTCAAAGgaaaagAA
CAAAGTCTCATTACGTAATCTTTCAATGGTCCAACGGCAAATTGGAAAAG
ATTTTGAGAGCAAGATCAAGAACATTAAAGAAAGCGTAACGACAGCAAAA
CAAGCTGTCTCATTGGATGTCACTGATGGAAAATCATGGTTCATCCTTGG
GAATGCATATCTCAGTTGTTTCTTTTCCACCGGTCAAAATCCCAGCGACA
TCAAACAGGCCATGGTGGCTTATTCAAGAGCTGAGAAAGATAAATGCTCA
CAAGTGAACCCAGATTTGCACTACAATAAAGCAGTTGCCTTCAAATACGA
AGAGGACTTCCCAAACGCAATGAAAGGGTACGAGATGGCGAGAAAATTGG
ATCCTGAATGGGACCAACCCAAAGAAGAACTTGCCGATCTCAAAAAGAGG
CTGAAAGCTTCCGTTGAACTCACTCGAAACAAGGCTGGTTTGAAACCCAA
ACGTGTCCAAACGTTGCTAAACGCTTTCAAAGACACTGATTACGGACCGT
ACCAGACTGGAGTTTATACTAGCCCTCTCAATAACAAAATCGAATTGACA
CGTACCAAGTTTGAAGAACTGAATGCTGGTCGAAATCCAAATAAGGTTGC
GTGTGGGAAAGTTGTTGCAATGGTTCCTGTTACAGATAGTTTCCCTTTtC
CTTGCATTTTGATGGACGCATCAAGTGACTGTATAGTGGTCAGTGTTTTT
AACTTGGCTAACGGTAAAGGATTGTTACTCGGTGATACTGTTGCTATACC
AGAACCATTCGTTCAAAACAATGCATTCTCCATCGAGAACGAGgaGCTTT
CCTTCAAATCGATTCGAGTTGATAATCCGATCGTTTTGGTGGTGAATCGA
AGGAAAGTTGGTCCAGAGAGGCTTCAGTATGGACAACTTTCCTTCATCAA
CAAAAGTGAATGATTTACATGGTTAGGGTTTGGATTTTAGTATCAGCAGA
TGATGTCGAGGAAAGAATTTCATGTCAAAACTTTGGCGATTGAGTAGATC
ATGGAGAGAATCACCCAAAATCCTtggcaaactttgaaaatttgaaacaa
tcGCCGTAATAAAAACTCATTTGCCTGCAGCAGGAGAATTGAGATTCTCT
TATGATGTTTTGGTGCGTTTCgtcgttgtcgttgttgttGATGTCCTTTT
AAAACATTCATAACAAGTTTATGTAGTGTTTCGTGTTAATTTATATTACC
AAATCATTTTAAAGTATTAGGAAGGAGTGTATCATAATCCGTTCGGAACA
GGAAGGGAATTGGGGAGGGTTATTTAGATATTTACTATCTAACGTCTTGC
TTCCAAGTATTGCAGGTGGGATATGGAACGAGTCCACTCGATGTAGATGC
TAAtaaacaatagatttttttatCTTGTATATTTATTTGTACAGCCTTAT
TTCTAAAGAATTacattatttcataaaagaaTCTATCCGATAACAAACAG
AAT
Run BLAST on NCBI

transcript from alignment at sc0000018:890721..899125+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002086 ID=TCONS_00002086|Name=TCONS_00002086|organism=Clytia hemisphaerica|type=transcript|length=8405bp|location=Sequence derived from alignment at sc0000018:890721..899125+ (Clytia hemisphaerica)
aaaaatgacaattttgatgacgtcagcatttttactaaGAGCGATAAATT GGAACATCGACATGCTCATCATGTAGCCCTGATAAGgggctttcagaaaa atatatagtttaatatgtttagatcagccgttggcgagatataacgattt taaaatcgtttaaaacgcttatttttgctgagtcagcactttttttcgat tttaaaatcGTTATATCTCGCCAACGGTTGGTTTAAACATactaaaccat atatttttctgaaagcccaTGATCAGGGCTACATGATTAAATTATCGACG TTCCAATTTATCAATCTCAGTAAAAATGCggacgtcatcaaaatcgtcat tttttggactttagaggTCATATCTCGGGACAACGTGGTCCAAATatcaa aagtgaccccattttctttatttactcATCGAGAGCAATCTCCCTGTATA gctatttttgacatttgaaaaacattaaaaatcagttctcaagggtcccc ccttgattaattgtagaaaaaagaACCATGTCCGCCATTATCAATTTGAG GGTtttcccatcttcctgggggtggggcttttttttggtgattcctgaca tgttcctggacctatgtgcaaaatttcatctctacaccatttttgTCCCG GTATTGGTGGTTTATgacctaattctacctgactaataCTTTATTTTAGG TGTAAAAAAACAAGTTTAATTTAATGGGTGTTTTGCCCAGCCCAACCCAT GTTTCTTAGGTAGGAGAACATTTAACGCGCATTAATGATGCACCTACAAA GAGCCAAAAGTATTCCAAATGGTGTGTGTCATTTATCAAGTATCATTTTT ATATGTCTTGAAGGTTTTCTGTGACTGACTATCAGAatgatgtttttatt tcaaaattcttttttaaccTTGTCAATAACTGTTCAATTTCATCTGCACT ATAAACCTTTTTCTTAGGACCTTGTTGTAAAGTTGTACGAATACCGTGAC GAATATCTTTTGAATAATGACATTGAAAAAGCTATTGATAAACCAAATGA TGTGAAAGAAAAAGCCAAGGAAGCTCTTTGTGAGCTTGACAGTTTACAAC gtaagaaaattttactttagattTGATATTTGTCCCAAATACAAGTACAG CTGCCACTGCTAGATGTCACTCCGAATTTTCTTCAGCAAAGAAAGTTAGA GTTGAAGGTTTTTTCAATGGATCAACTCTGGTTTTGAATCTATTGTACCA gattattttcaactttaaatGGTTTGAAAACATCTCAGATTGATAAgatc tttttgataaataacttTAGTTAGTAGTACCAAGAAAGCTATCTTTTTAG CCTTTGGGAAATCATTCTATACTTTTGAGGACAAGTTGAATGGATGAACT ttgtaatgaaatttttttatgctTTTATAGTTTCCATAAGTGAAAAAGCC ATCTTCTTTGGTCTCCGTGGAAAGATACTAAACATTTCACAAGACTATGA CAGTCGAGCGGCAGAATGTCTTTCCAAAGCTCTGAAATTGAATCCAAATC TTATTGATGCATGGAATGAGCTTGGTGAAAGTTANGGCAGAATGTCTTTC AAAAGCTCTGAAATTGAATCCAAATCTTATTGATGCATGGAATGAGCTTG GTGAAAGTTATTGgaaaaacaaagatatagaTGCAGCATACAACTGCTTT ACACAAGCCAACTCAAAGGTATGAAAATTCTCTAAAGTATAAATTTCATG TTCGAAAAGTAATATTATATAAATGAATTTTGTTTCCAAGTTGGTTTgac tcatttttttttcttaggaaaagAACAAAGTCTCATTACGTAATCTTTCA ATGGTCCAACGGCAAATTGGAAAAGGTCAGTCTCAAATTCTTTTTACTTT GGATTAAAATTTGTTTGTTTAGATAGCatatctgaaaaataaattgcTTC CTATCATTAtgttttttgaaatactttaGTTAAAGATGCATTTAGttgat aaagaaaatttttactttctgCTCCTGTTCCCTCTCTATCATAAATAGTG CCAACACATTAAACAAGGAATAATGTGTGAAAATTTACTACGACTCATTC ATTGTTTAGATTTTGAGAGCAAGATCAAGAACATTAAAGAAAGCGTAACG ACAGCAAAACAAGCTGTCTCATTGGATGTCACTGATGGAAAATCATGGTG TAAGATTTCTTCGTTTCTTAATTATTTTATTCTGGAAAGCACAGGAACGA GATCCCATCAAAACTattaaaattcatgatattcatgacgtaatgttttc tacggaaagaccccggtttttgccagtagtggcaaattttttacaacttt cgtctagtttaaatttgcattacgtcatgaatatcatgaattataacCTT GTTGGCTTTGACTTTTTTTAGCCTGTGATTAATAATTCAGTGAGTCCTTA TCCAGTATTTTTTTCTGGCTATAATGTGGACAGGTCCATTTGTATATAAA GTATACTCTTTTTTTGTGTCGATATAATTTTTGGGCTACTAGTTGAGTTC TCAGTGTAATCGCTTATAAAACtgccttgaatttttttaatataaatttG TTTCTCATTTCAGTCATCCTTGGGAATGCATATCTCAGTTGTTTCTTTTC CACCGGTCAAAATCCCAGCGACATCAAACAGGCCATGGTGGCTTATTCAA GAGCTGTAAGGActtagtgcggaaaggggtctgaccccccTTGTTAAATg atcccccaacctttaaaagtGCCTATCcccccaagggttttgggctaaat tttcaaagatataTAGTGTATATAGCGATCCGATAATCCCCTTCTCGCTG CTACCCCCTTCTAAAAATGAATCCCTTGTTTTCTCTCTATTTGTTTATGG TAAAAAAGGAAGGAAANAAAATAAATTGCTTCCTATCATTAtgttttttg aaatactttaGTTAAAGATGCATTTAGttgataaagaaaatttttacttt ctgCTCCTGTTCCCTCTCTATCATAAATAGTGCCAACACATTAAACAAGG AATAATGTGTGAAAATTTACTACGACTCATTCATTGTTTAGATTTTGAGA GCAAGATCAAGAACATTAAAGAAAGCGTAACGACAGCAAAACAAGCTGTC TCATTGGATGTCACTGATGGAAAATCATGGTGTAAGATTTCTTCGTTTCT TAATTATTTTATTCTGGAAAGCACAGGAACGAGATCCCATCAAAACTatt aaaattcatgatattcatgacgtaatgttttctacggaaagaccccggtt tttgccagtagtggcaaattttttacaactttcgtctagtttaaatttgc attacgtcatgaatatcatgaattataacCTTGTTGGCTTTGACTTTTTT TAGCCTGTGATTAATAATTCAGTGAGTCCTTATCCAGTATTTTTTTCTGG CTATAATGTGGACAGGTCCATTTGTATATAAAGTATACTCTTTTTTTGTG TCGATATAATTTTTGGGCTACTAGTTGAGTTCTCAGTGTAATCGCTTATA AAACtgccttgaatttttttaatataaatttGTTTCTCATTTCAGTCATC CTTGGGAATGCATATCTCAGTTGTTTCTTTTCCACCGGTCAAAATCCCAG CGACATCAAACAGGCCATGGTGGCTTATTCAAGAGCTGTAAGGActtagt gcggaaaggggtctgaccccccTTGTTAAATgatcccccaacctttaaaa gtGCCTATCcccccaagggttttgggctaaattttcaaagatataTAGTG TATATAGCGATCCGATAATCCCCTTCTCGCTGCTACCCCCTTCTAAAAAT GAATCCCTTGTTTTCTCTCTATTTGTTTATGGTAAAAAAGGAAGgaaaac agtaaagaaaaattaagtctggcaatTATGTGtaagccccccttcttaaa aGATCTCCCTCCttgctacccccccccctttttaatgaaaatttctgatc ccctccttcacttttttggaaggtgtcagcATCTTAAGAAAGGGGGGAGG TCCGAACTATGTAAGGATCATCGATTTATTCATATTTGCCTTCGAAATTC TTATTTTGGTGTTATTTTAATTGCTCATCGATCTTTTTATCTATAGgcct ttttcataaattattttaagtgcaacgactgcctcgttttgaaactatta ccaaggtgattaaatccctCGAGTCTTCAgttgtgtttttataaaaagaa taaGACCATGTTCAAACGTTACGattccgttccgttccgttccgaaacgg ttCCAAAACAaatgtgaacgtcaaaatttgaaacgtcaaaaaagaagacg ttacaaagcaaaacagatcgaaacggtttcgctccacttttttcatcgga acggatcTGCTCCGTTTCCTttctccgaaacgttccgaacacactcgatc cgtaacgaaaatcatacNtctgctccgttttcttgctccgaaacgttccg aaaccaatatgaacacactcgatccgtaacgaaaattataccggagcgaa acggaacagtaacgtgtgaacatggtctaaacttcttatgaactcctctg ggaatcaaATAACATAGCAACATTCTGAAAACGAGGTAAacgttgctcgt gacgtaatttatgataaggtctatttaattaagagaaaatgaagatgaaa agaaaaaggaatatttttcataaCTAACTTACTTCTTAAAATCATTATNT TTTAATTAAGTTaagagaaaatgaagatgaaaagaaaaaggaatattttt cataaCTAACTTACTTCTTAAAATCATTGTTGAGAATCTCGTCATGTTTT CTTATCCAAAGAACTATCctaaaattccagattttttcttttaaaacagG AGAAAGATAAATGCTCACAAGTGAACCCAGATTTGCACTACAATAAAGCA GTTGtaagttttcaaaattctttcgtCGCTCTTTCGAAATTTCTGCTGAA ACTGTTTATTTagccctttttttaatttgagacCCAAAAAATCTGCCTTT CTCTGTGTACTTTTGGTTGATCACAGGATAACCTTTattaacttttacaa aaaaaatagagTTAAAATCATCTCATCTTTTCTTTGGGCATCAGGCCTTC AAATACGAAGAGGACTTCCCAAACGCAATGAAAGGGTACGAGATGGCGAG AAAATTGGATCCTGAATGGGACCAACCCAAAGAAGAACTTGCCGATCTCA AAAAGAGGCTGAAAGCTTCCGTTGAACTCACTCGAAACAAGGTAACATGC ATTCAGGAATGAATATACTGTGTctgaatatttttattatttttaggtcC TCCTTGTGATTTTCATTGAAGATATTTGGGAAatataaaagtagtaaaat gtaaacattgcgcgaaccacgtgtcattaaagagaacaattgaaaccacg tgtccaaaacaaacttgtagaacaattgaatcaatcaaaatcagccatat tttttataattttttattttgacatgtgacttttgttttgattttgtatc ccgctgcatatggtttgtttacaaattttgtcagtacttttatgtccctt taaaaaacCTTTTAGGCTGGTTTGAAACCCAAACGTGTCCAAACGTTGCT AAACGCTTTCAAAGACACTGATTACGGACCGTACCAGACTGGAGTTTATA CTAGCCCTCTCAATAACAAAATCGAATTGACACGTACCAAGTTTGAAGAA CTGAATGCTGGTCGAAATCCAAATAAGGTTGCGTGTGGGAAAGTTGTTGC AATGGTTCCTGTTACAGATAGTTTCCCTTTGTAAGTAACTCTTTTAAACT TGTTTGAAATATATGACATTTTAATTAGTCGGTGATGAATTTTGAATGTT AAATTGAAACATtgtcacaatcttttaaaaatgtaaGGCTAATTATTGTA AACAATTCACTGTTTTCTTTGTAATACTTCGATTTTCAAAAAGGAAGCTC TTAGATTTAAGAACAATGAATGGCTCACAAATCTCATCACTCGGTGGATA AATTGACAATTTCGCTCTTACcaaatatgaaattttaaagTTCCCTGTAC TTTAAACTGAAGGAatcattttctcttttctttcagtCCTTGCATTTTGA TGGACGCATCAAGTGACTGTATAGTGGTCAGTGTTTTTAACTTGGCTAAC GGTAAAGGATTGTTACTCGGTGATACTGTTGCTATACCAGAACCATTCGT TCAAAACAATGCATTCTCCATCGAGAACGAGGTATGCTTTTTGCTGTGCT CTTTTCTGGCCGTGGAAACCTCTTTCAGGGCTCTCATTNTATTTTACTGT GCTCTTTTCTGGCCGTGGAAACTTCTTTCAGGCCTCTTATTTGTCTTAGA AtttcagaaaaaggaaaagcaaAAAGTTTTCTTCTTAGGACCaccctatt catgatatgcaccactgcaatgacttcacgaaattatgcaacttttctgt ttttgttccacccaatacgtcacttctattgtttaagtgacgtattgggt ggaaagttttaaaagttctcagaagactctccagtggtgcatatcatgaa tagggaAATATCCActgaaagatattttttagaaaatcaaagaaatgaaT AGCTTGGAAGACTTAAGATACTTGATACCTATATGAAAATGTTCTAGTTT GGGTAACCTGATAGCAGCTGTGGAGTTTTCTTGACGCGaaacgctgaagc tctaaagatcgctaaaaactaacatctgaggaaaatggccCTATTTCTAC GGAAAATTTGAGTCAACTTTTTGTCTCGTGccgaaaacttaaaaaattaa atgGCGCTCCATGTTTTGCatgcttcttttccaaaaaagttctgaatttG CTTTGAGAGGACTTGACATATCTCCCGACCCAAaagttgtcggccatgac acccttccctgtcgacattgggcttttccaggaaaaaaaacgtatacccc ctgttgaggaggtccatttccgttccaagggggtaaggtttgatatgtgg cggaattccatagagAGATacaaaatctgtcaaaaataactggaattcca tgggggtagccttttaaatcctactaaaattcagaattccagaggggttt aaccctgaaattgcctggaattccagggggctacagcatttccagccaca aaatgatggacctcctcaacagagGGTAtaaggtttttttctggaaaatc ccATTGCACACGGACCTGTTCttcttaaataaaattctacgcGGTCTGCG TACAGGTGCGCGaccatattcttcagattggatattttcgcccacgtctt tagagcttcagcgtactgggccagaaaatacacaatctgtTGTCAGGTTA AGTTTGGGGGAAGTTGTCCTAAATTTTCATAACATAAATAATCCAAAAAA GTTGTCAGTAATTCCTTTGCTTTTTTGCACGCGTCAAAATCAGTCTTAAT TCGAATAACAATGCTAACAAAAGCTCTATTTTGAGAGTAACTATTTCTTT TCATAACACTCTTCTAGGTTTTGCTactatcttttgaaaaattcccaAGT GTTCTCACTTTTAGTGTTTTAGCTTTACCACATAAACTCAGAGAAGCTAC AtggaaatttatatttttctgatAGAAGTGAGGGTCATTCTCAGATAGTA AAAGTGAATTATTTCAATTCAtgattatttcttttcattttcaaggaGCT TTCCTTCAAATCGATTCGAGTTGATAATCCGATCGTTTTGGTGGTGAATC GAAGGAAAGTTGGTCCAGAGAGGCTTCAGTATGGACAACTTTCCTTCATC AACAAAAGTGAATGATTTACATGGTTAGGGTTTGGATTTTAGTATCAGCA GATGATGTCGAGGAAAGAATTTCATGTCAAAACTTTGGCGATTGAGTAGA TCATGGAGAGAATCACCCAAAATCCTtggcaaactttgaaaatttgaaac aatcGCCGTAATAAAAACTCATTTGCCTGCAGCAGGAGAATTGAGATTCT CTTATGATGTTTTGGTGCGTTTCgtcgttgtcgttgttgttGATGTCCTT TTAAAACATTCATAACAAGTTTATGTAGTGTTTCGTGTTAATTTATATTA CCAAATCATTTTAAAGTATTAGGAAGGAGTGTATCATAATCCGTTCGGAA CAGGAAGGGAATTGGGGAGGGTTATTTAGATATTTACTATCTAACGTCTT GCTTCCAAGTATTGCAGGTGGGATATGGAACGAGTCCACTCGATGTAGAT GCTAAtaaacaatagatttttttatCTTGTATATTTATTTGTACAGCCTT ATTTCTAAAGAATTacattatttcataaaagaaTCTATCCGATAACAAAC AGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001093XLOC_001093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002086-exon-sc0000018-1491911889:890721..891541TCONS_00002086-exon-sc0000018-1491911889:890721..891541Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:890721..891541TCONS_00002086-exon-sc0000018-1510915933:890721..891541Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:890721..891541TCONS_00002086-exon-sc0000018-1575043694:890721..891541Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:891688..891820TCONS_00002086-exon-sc0000018-1491911889:891688..891820Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:891688..891820TCONS_00002086-exon-sc0000018-1510915933:891688..891820Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:891688..891820TCONS_00002086-exon-sc0000018-1575043694:891688..891820Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:892151..892438TCONS_00002086-exon-sc0000018-1491911889:892151..892438Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:892151..892438TCONS_00002086-exon-sc0000018-1510915933:892151..892438Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:892151..892438TCONS_00002086-exon-sc0000018-1575043694:892151..892438Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:892538..892595TCONS_00002086-exon-sc0000018-1491911889:892538..892595Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:892538..892595TCONS_00002086-exon-sc0000018-1510915933:892538..892595Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:892538..892595TCONS_00002086-exon-sc0000018-1575043694:892538..892595Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:892830..892919TCONS_00002086-exon-sc0000018-1491911889:892830..892919Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:892830..892919TCONS_00002086-exon-sc0000018-1510915933:892830..892919Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:892830..892919TCONS_00002086-exon-sc0000018-1575043694:892830..892919Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:894316..894407TCONS_00002086-exon-sc0000018-1491911889:894316..894407Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:894316..894407TCONS_00002086-exon-sc0000018-1510915933:894316..894407Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:894316..894407TCONS_00002086-exon-sc0000018-1575043694:894316..894407Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:895620..895673TCONS_00002086-exon-sc0000018-1491911889:895620..895673Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:895620..895673TCONS_00002086-exon-sc0000018-1510915933:895620..895673Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:895620..895673TCONS_00002086-exon-sc0000018-1575043694:895620..895673Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:895865..896011TCONS_00002086-exon-sc0000018-1491911889:895865..896011Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:895865..896011TCONS_00002086-exon-sc0000018-1510915933:895865..896011Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:895865..896011TCONS_00002086-exon-sc0000018-1575043694:895865..896011Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:896336..896550TCONS_00002086-exon-sc0000018-1491911889:896336..896550Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:896336..896550TCONS_00002086-exon-sc0000018-1510915933:896336..896550Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:896336..896550TCONS_00002086-exon-sc0000018-1575043694:896336..896550Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:896857..897001TCONS_00002086-exon-sc0000018-1491911889:896857..897001Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:896857..897001TCONS_00002086-exon-sc0000018-1510915933:896857..897001Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:896857..897001TCONS_00002086-exon-sc0000018-1575043694:896857..897001Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1491911889:898466..899125TCONS_00002086-exon-sc0000018-1491911889:898466..899125Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1510915933:898466..899125TCONS_00002086-exon-sc0000018-1510915933:898466..899125Clytia hemisphaericaexon
TCONS_00002086-exon-sc0000018-1575043694:898466..899125TCONS_00002086-exon-sc0000018-1575043694:898466..899125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:890721..899125 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.77592e-06 3.0083e-05 4.76974e-07 1.29642e-05 0.0713723 0.00697436 0.00291665 0.0408476 0.000464834 4.50698e-06 9.94785e-07 4.4157e-05 4.12116e-07 1.1819e-05 0 6.83797e-10 7.67266e-06 5.97169e-10 0 1.44293e-05 1.86378e-05 0.000223892 5.25026e-08 9.30469e-07 1.00402 1.04595 4.85363e-07 1.32749e-06 5.54788e-05 8.96024e-05
Blast
BLAST of TCONS_00002086 vs. Swiss-Prot (Human)
Match: TTC5 (Tetratricopeptide repeat protein 5 OS=Homo sapiens GN=TTC5 PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 1.141e-85
Identity = 143/335 (42.69%), Postives = 207/335 (61.79%), Query Frame = 1
Query: 1114 ECLSKALKLNPNLIDAWNELGESYWKNKDIDAAYNCFTQANSKEKNKVSLRNLSMVQRQIGKDFESKI-KNIKESVTTAKQAVSLDVTDGKSWFILGNAYLSCFFSTGQNPSDIKQAMVAYSRAEK-DKCSQVNPDLHYNKAVAFKYEEDFPNAMKGYEMARKLDPEWDQPKEELADLKKRLKASVELTRNKAGLKPKRVQTLLNAFKDTDYGPYQTGVYTSPLNNKIELTRTKFEELNAGRNPNKVACGKVVAMVPVTDSFPFPCILMDASSDCIVVSVFNLANGKGLLLGDTVAIPEPFVQNNAFSIENEELSFKSIRVDNPIVLVVNRRKVG 2112
            E LSKA+KL P L++AWN+LGE YWK  D+ AA+ CF+ A +  +NKVSL+NLSMV RQ+  D E +   ++ +SV  AK AV +DV DG+SW+ILGN+YLS +FSTGQNP   +QA+ AY++AEK D+ +  NPDLH N+A   KYEE +  A++G+  A  LDP W +P++    L + L     L  +K  +K K++Q++L + +    GP   G Y S    K+ L       L  G N   V  GKVV  +   +  PF   L+D+   C  V V+N+    G+L+GD+VAIPEP ++ +    + ++ SF S+RV+ P++LVVN +  G
Sbjct:   90 ELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTCFSGALTHCRNKVSLQNLSMVLRQLRTDTEDEHSHHVMDSVRQAKLAVQMDVHDGRSWYILGNSYLSLYFSTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSRAAALDPAWPEPRQREQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSGAVILGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPEPNLRLHRIQHKGKDYSFSSVRVETPLLLVVNGKPQG 424          
The following BLAST results are available for this feature:
BLAST of TCONS_00002086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC51.141e-8542.69Tetratricopeptide repeat protein 5 OS=Homo sapiens... [more]
back to top