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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002049 ID=TCONS_00002049|Name=TCONS_00002049|organism=Clytia hemisphaerica|type=transcript|length=2727bpRun BLAST on NCBI protein sequence of TCONS_00002049-protein >TCONS_00002049-protein ID=TCONS_00002049-protein|Name=TCONS_00002049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp MEHRPYDIIVYGASGFTGQFAAVEAVRTCKGKKIGLAGRTKAKLQEVVKRRun BLAST on NCBI transcript from alignment at sc0000018:576599..590893+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002049 ID=TCONS_00002049|Name=TCONS_00002049|organism=Clytia hemisphaerica|type=transcript|length=14295bp|location=Sequence derived from alignment at sc0000018:576599..590893+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:576599..590893+ >TCONS_00002049 ID=TCONS_00002049|Name=TCONS_00002049|organism=Clytia hemisphaerica|type=CDS|length=14868bp|location=Sequence derived from alignment at sc0000018:576599..590893+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002049 vs. Swiss-Prot (Human)
Match: SCPDL (Saccharopine dehydrogenase-like oxidoreductase OS=Homo sapiens GN=SCCPDH PE=1 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 8.223e-97 Identity = 164/424 (38.68%), Postives = 255/424 (60.14%), Query Frame = 2
Query: 1127 EHRPYDIIVYGASGFTGQFAAVEAVRTC----KGKKI--GLAGRTKAKLQEVVKRIEKELGSDCDPTDIGIVVADNKNEESIREMCRQTKVVVNCVGPFRWYGELVVASCVEMGTNYVDITGEPEFMQTCQIKYHKAAEEKGVHIVSACGFDSIPADMGLEILRERFPGVLTAAESYIHIRSKRANY----GTYLTIIHSVQNRNSVKDQHKTIFRQKIPYTGPRLRLRNG-GFSNSENRWFIPFLGADPSVVKRTQYHESMVHDRMPVQYFAYFTVPSIFYMICFAIFGVVLFVLTKFSFGIKLLENHPKFFTFGTFCKEGPTRKEIDAGSFKIVFHGKGYKKEPESRTSAGRPDQSMSLKFSGPEAGYIFTSTCVVAAAATILDD--NLINKGGVLTPASAFRKTKFVERLEKRNVKIEVMN 2359
E RP+ ++V+GASGFTGQF E R + ++ +AGR++ KLQ V+++ +LG +++GI++ D N S+ EM +Q VV+NCVGP+R+YGE V+ +C+E G + +DI+GEP+F++ Q+KYH+ A +KGV+I+ + GFDSIPAD+G+ R + G LTA ES++ I S GT+ + I+ ++++++ + +P GP+L+ R + + IPF+G+D SVV+RTQ + + PVQY AY TV I +I G+ +F G +LL P FF+FG F K+GPT+K+IDA SF + F G+GY + + T +P+ + + GPEAGY+ T +V AA T+L D +L GGV TP +AF KTK ++RL K ++ V++
Sbjct: 4 EQRPFHLVVFGASGFTGQFVTEEVAREQVDPERSSRLPWAVAGRSREKLQRVLEKAALKLGRPTLSSEVGIIICDIANPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGASCIDISGEPQFLELMQLKYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKMNGTLTAVESFLTIHSGPEGLSIHDGTWKSAIYGFGDQSNLRKLRNVSNLKPVPLIGPKLKRRWPISYCRELKGYSIPFMGSDVSVVRRTQRYLYENLEESPVQYAAYVTVGGITSVIKLMFAGLFFLFFVRFGIGRQLLIKFPWFFSFGYFSKQGPTQKQIDAASFTLTFFGQGYSQ--GTGTDKNKPNIKICTQVKGPEAGYVATPIAMVQAAMTLLSDASHLPKAGGVFTPGAAFSKTKLIDRLNKHGIEFSVIS 425 The following BLAST results are available for this feature:
BLAST of TCONS_00002049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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