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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002047 ID=TCONS_00002047|Name=TCONS_00002047|organism=Clytia hemisphaerica|type=transcript|length=5487bpRun BLAST on NCBI protein sequence of TCONS_00002047-protein >TCONS_00002047-protein ID=TCONS_00002047-protein|Name=TCONS_00002047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1207bp MYFSLVLMSALVTLAWSQQTITRTQTFSFRVNLNDLLPVCKFDTGNHRSNRun BLAST on NCBI transcript from alignment at sc0000018:534555..546073+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002047 ID=TCONS_00002047|Name=TCONS_00002047|organism=Clytia hemisphaerica|type=transcript|length=11519bp|location=Sequence derived from alignment at sc0000018:534555..546073+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:534555..546073+ >TCONS_00002047 ID=TCONS_00002047|Name=TCONS_00002047|organism=Clytia hemisphaerica|type=CDS|length=32616bp|location=Sequence derived from alignment at sc0000018:534555..546073+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002047 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2) HSP 1 Score: 357.451 bits (916), Expect = 1.069e-100 Identity = 225/612 (36.76%), Postives = 321/612 (52.45%), Query Frame = 3
Query: 2205 PTTCNIGNTYSNCINVRRRPTRCN---LNSPYRTYDGTCNHPYRTNWGAANTALRRVIKASYADGYDTPRGFPCNPSPNKKFDSRSLPTSHQVSRNLFKITTENVKNQHSLSTLYMTFGQFLDHD-----ITLTPHESCKRKDCSNTQESNKYPCFPIKFE-NDKPV-----CTGFARSKPACRRAG-----DHTTPRDQVNQISAFVDASNIYGSSATHARRLRXXXXXXXXXXXXXXXMPRDPAI-------KDC-----KTHGGCSLVGDERGDENIALHSMHTLWVREHNRVATELKKLNPKWTEEKLYQESRKIVSAEYQHIVYNEYVPKLA------QINPYRGYSPYIQPSIINVFATAAFRFGHSLVPNAFSQLDKNFNKV-RDSILLQKAFFN-IQPIKQHGIESTMIGL--MANQSNEVNMQFPQAIGRKLFIPFGDRNGYDDLMARNIQRGRDHGLPTYGEWRRVCRLPALNSFNDL-NRYMQKGAKEVFEKLYKHPNDIDIFAAGISENHSNGKIVGETFSCILRFQFQALRNGDRYFYAKRDIFRSAQLKSIQKTSLAKVMCNNLKDLVSVQNDVFHSYYGGAKRVECSTIPDLDLSLW 3914
P N+ S C RR C+ + YRT+DGTCN+ WGA+ TA R++K+ Y +G++TPRG +P++ ++ +LP VS L I TE V + + M +GQFLDHD + L+ + CSN SN PCF + ND C F RS P C + PR+Q+NQ+++++DASN+YGS+ AR +R L L G P + +C ++ C L GD R +E + L SMHTLW REHNR+ATEL KLNP W + +Y E+RKIV AE QHI Y ++PK+ + Y GY P I I N FATAAFRFGH+LV +LD+NF + +D + L KAFF+ + + + GI+ + GL +A + + + +LF DL A NIQRGRDHG+P Y ++R C L A ++F DL N +E ++LY +ID+F A + E+ G +G T C+L QF+ LR+GDR +Y +F AQL I++TSLA+++C+N ++ VQ+DVF C IP +DL +W
Sbjct: 711 PQYLNLIANLSGC-TAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENGFNTPRGI----NPHRLYNGHALPMPRLVSTTL--IGTETVTPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVC-SNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLF--SMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYGSCDEIPRVDLRVW 1312 HSP 2 Score: 352.443 bits (903), Expect = 4.949e-99 Identity = 232/632 (36.71%), Postives = 325/632 (51.42%), Query Frame = 3
Query: 408 NDLLPVCKFDTGNHRSNCISTRQKVKCDAKT---KYRSFDGTCNNLLFTTRGASNTPLRRLVGADYIDGGKTPRGAPCRATNSLLVPYNIYQTGYNPLDRWSKRYPTAHQVSRNLFQITTDNVRNMRGFSTMFMTFGQFLDHD-----VALVPHESCKTKDCSNLATSYKYPCFPIKFE-NDK-----PECTGFARSRPACHSSSQGWNRNM---RNQVNTISSYVDASQVYGNNDAHAKKLRTLDG------TGKLKISNKGLLPL------DLAIKDCKTHGGCSLVGDERGDENIALHSMHTLWVREHNRVATELKKLNPKWSEDQLYNTARKINSAIFQHIVYTEWLPNIV------KLPKYSHYNPYYDSSMINAFAAAAFRFGHSLIPNAFSQVDMGYNKMREDML-LQKAFFNT-EYIHKYGIEATLMGL--AANQSKEVNMQISEGIGRKLFIPFGKAGYDDLAARNIQRGRDHGVHVYGVWRKRCNLPAVNTFDDLKKYMQKGA-SEVFQKLYTHPNDIDLFAAGLSETHLPGLMVGPTFSCIFKHQFTGIREGDRFYYESKDVFTPAQLAEIKKMSLSKVLCNNLKGSVSIQRNVFKVFNKAQDKRVTCSSIPGIDLKAWSE 2183
NDL+ + + S C + R+ C KYR+ DGTCNNL GAS T RL+ + Y +G TPRG + P+ +Y P+ R VS L I T+ V F+ M M +GQFLDHD VAL + CSN+ S PCF + ND C F RS P C S N R Q+N ++SY+DAS VYG+ + A+ +R L G ++ S K LLP + + ++ C L GD R +E + L SMHTLW REHNR+ATEL KLNP W D +Y RKI A QHI Y WLP I+ L +Y Y+P ++ + NAFA AAFRFGH+L+ ++D + + +D L L KAFF+ +++ GI+ L GL A + + + ++ + +LF DLAA NIQRGRDHG+ Y +R CNL A +TF+DLK ++ E ++LY +IDLF A + E +PG +GPT C+ QF +R+GDR +YE+ VF+PAQL +IK+ SL+++LC+N +Q +VF+V +C IP +DL+ W +
Sbjct: 706 NDLVSPQYLNLIANLSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENGFNTPRG---------INPHRLYNGHALPMPRL---------VSTTL--IGTETVTPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVC-SNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLF-SMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYG-SCDEIPRVDLRVWQD 1314 The following BLAST results are available for this feature:
BLAST of TCONS_00002047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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