TCONS_00002045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002045
Unique NameTCONS_00002045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002045 ID=TCONS_00002045|Name=TCONS_00002045|organism=Clytia hemisphaerica|type=transcript|length=2343bp
ATCCCAATGATGGTGATCTTACGGACTAAAAAATTCATCACTACTGGATT
TGTCAAATAAGTAAAATAATCATGTCAGTTGAGAGTAAAGCTCGCGTTTA
TGCCGATGTCAATACACACAGACCAAGAGAATATTGGGATTATGAATCAC
ATGTTATTGAATGGGGGCAACAAGACAACTACCAGCTAGTAAAGAAGCTT
GGACGAGGAAAATATTCAGAAGTATTCGAAGGAGTCAAAGTCACAAATAA
CGACaaagttgtaataaaaattctgaagcctgtcaaaaagaagaagatta
agcgcgaaataaaaattttagaaaatttgcgAGGAGGACAAAATATCATC
ACATTACTGGATGTAGTTAAAGACCCCGTGTCGAGGACACCTGCATTAGT
TTTTGAATATGTCAATAATACAGATTTTAAGTCGCTTTACAATCAGTTTA
CGGATCACGATGTCAGGTTTTATATGTACGAATTATTAAGGGCGCTTGAT
TACTGCCACAGTATGGGAATCACTCACAGAGACGTTAAACCGCACAACGT
CATGATCGACCACGAACAAAAGAAATTACGACTCATTGATTGGGGTTTAG
CGGAATTCTACCATCCAATGCAAGAGTACAACGTCCGTGTGGCTTCAAGA
TATTTTAAAGGGCCCGAACTTTTGGTTGACTTTCAAGAATACGATTACTC
ACTGGATTTGTGGAGTTTTGGTTGTATGTTTGCCTCAATGATCTTTCGCA
AAGAACCCTTTTTTCATGGACACGACAATTACGATCAACTTGTGAGAATT
GCAAAGATCCTTGGTACAGATGAATTATTCGATTACATGGACAAATACGG
AATCAGTCTGGATCCTCGCTTCAACGACATCCTCGGCAGACATTCAAAGA
AACGATGGGAACGTTTTATCAACACAGACAACCAACATCTAGTCAGTAGT
GAAGCTCTCGACCTTTTGGATAAACTACTCAAATACGATCATATGGAACG
ATTGACGGCCAGCGAAGCCATGGACCACCCTTACTTCGCTACAGTAAGAC
AAGGAGCTGAGAAATCTGACGCCAACAACACCAGCACAGGTGCAGCATCG
TCGCCATCAACACCATCCAAATAGACATTTATACCAACCAACAAAATATC
CCTCTTGGAAAGAGAAAGACGAACGCCCCCGTGTTTttgtacaaaatatt
ttttaacccaATACGATCGTTTAGCGATGGGAAAATATGATGGCTAAATG
GAATGAAAGAACTGATGGTTACAAATgacgaaaaaataaacaattgtTGA
TCAGGTTTCTAGTTGTTGGTGGCTAGTAAATGATAGTTATTCTTGGGTGA
ATGGAATTAAACATCACGATGTACCGTTTAGAACACACTGACAATTCAAT
GGAATGCTTTGATTGGATGAACATTAGACAGCAGTGTATGATGCTATGAA
CAGAATACAACTTAAGCAATCTAGAACTGTTAAGCGGAAATCAGGATGAA
ATTTGAAACCAGAAAGTCTGGTTTGTTTTTTATCATGGTTTCAGTTTGAT
TTCTTGGTTTATGATATGGGACAAACTTGAAACCTTTTTTCAATGTTTCT
ATAAGCAATAGTAGTTGAATGTTGTCTCGAATATTGTAAACCGAGAAGTA
CCATATCTACTAGATTCCGTTGGTTGTGTTTAaaaatctattttccaatt
agtGAGGGTTGCTAGGCTCCTACCCTAGATTTCTAGTTGAACCTTTTTAA
AATTCACAATCTCTTGAAAagggttttataaaaaaaataatttataataa
tgatattttttagaACCAAAACTTTACGATCTTCATTTTGGGCGAACAGA
AAATGAGTTGGATGTTCTGTcttttcgtttgttttgaaaaattaatttga
agatAAATCAAGTCAAACTAGTAAAACTAAAGATCCGATGACTTTTTACG
AACATGTTTAAGTGAGGATGCGCtgacaattttttatttgttttctttaT
AGTCAGCATAAAGATAAATTATATGATGTGacgatttttttttagaaaaa
aaaacgtatTCATTATTCAATTActtgtaattattttcaaactttatgtA
TGACTTAACGAAAATGAAATTTCTAGAAcatttttatggtttttcttAGT
GCGAGGTCTGCTTGAAGAAGATGTCCCGTCTTAGATAATTTAAGCTGAAG
AGAGCCCTTCTCTAGAAGATGCTCATGCTAAGGAACAAATCACTCTGGTG
GAAATCTTTCTTTTTACCAAGTCAGAACCCTCTAAGGACCAAATACTTTG
AGAATTTCGTGACTGTAAAGTTTCCGAAAATCTAGCCTTTTAG
Run BLAST on NCBI

transcript from alignment at sc0000018:462624..483338+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002045 ID=TCONS_00002045|Name=TCONS_00002045|organism=Clytia hemisphaerica|type=transcript|length=20715bp|location=Sequence derived from alignment at sc0000018:462624..483338+ (Clytia hemisphaerica)
ATCCCAATGATGGTGATCTTACGGTAAGTTGAATGACTGATCAgctgaaa
aacatagaaaataacccACAAAAAAAGTCCCAGAAAGTCAGCAaaactac
cgtaagttggtctaatatcgacatccctcgtctaattctgacacccttct
ttagagacaggaataatatgaaagcttgaatcactgattgaaaaaggatt
attcctctctgaccactaagcaaagaaaaacagtttcaacctttctataa
atttcagctgataaaattggtttcagcccccccaccagaaatctgaaggg
cacctaggccatGTTAGTAGTAGGGGGCTAATATtatgcaattctttggg
gttacctattcattaagggtttctagctgtcttgatggaaGCTCTTGGGG
Ctggttatatttttttaatcaaatatttcaaattattgaatttttttacc
ccagcacctagtttcccattcaatttttcttttgtttcccgTCACGCCat
attttgctatatttttctaatgtgattgttttgatttacagccgccatct
ttatagcataagAACAAAGCTTATTAGCTTATCATTAGGCGTTCATATCA
TGCATCATTTagattttaggaatgacaaaagaacaaaaagtgtcaattca
aaaaaataagcgGCTGAATAgaggtacctaactcaaagcaattccTCAAA
GGGACCTAACTCACGTCATgcttcaatgggggcacctgaaaagtgggctg
aaaccatgtaaAAAGGGTGTCTGGATTAGAGGAAgggtgttgacattaga
ccaagttatggTACAAACTAGAGATTGAAAAATACGAAGATTCGTCTTTA
TAAAAAGAAGccacaaccccccccccccaaaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGAAA
TTGATATGTCATCAGGTTATCCTGGTGCTAAGATTATGAATTTACATAAT
TCTTGGAGCCCAAAATGTATTGTGTCCTACAAACAGCCCtgtgaattcag
acaaaatcataTCGGCACGCAAGTGCCGACCAAAACGGGCCGTaggccgg
caaaattttgccggcctagtggtcattttaggtcggcaaagccgtCCTAA
GTAGCTTGTTTAGGTCGGCAACGACGAACCAACAAATTCAGCTGCTCTAT
AATTGTGTTaataagttttatgttttataaagagaatggaatgaggctcg
attatcatgtgttatcaaatgataacacacttagattaacctaacaaata
atatttttcctctttaggtcGGCTTTGGCGACCCAAAACATTTATTNAaa
cctaacaaataatatttttcctctttaggtcggacccaaaacatttcttt
tgccGGCACGCCGACCTAGAGTGTAAATTACGTCGGCAAATAAAAGCTGA
CTTCAGCTCAAGTTACGTCGGCTTGCAGGTCGGCATTGCCGAATGCCAAC
CTGGATTCACAGGGCTGTACAAAAGGTCTATACTTCCCAGCAGTGTGCAG
AGCTTGTCACCCATTAGATCTTTGTttgtgaaattgttttttttttaatt
tagctTTTCAAGTTTGCCAAGTTTAGTAAAACAATTATTTTTGATGTGAA
TTTCATGACAAAGAACCAGTTTAATGAATCCTTTTAGAATTCAGAAATTT
TGCTGTGCATTGTTTACTTACAAGTCAAGTAAATGATAAAGTACTTTCTG
ACATTAATCTTTGACACACATTTTGGTGAGAGATTAGTATGATTAAAAGG
ATAGGTAAACAAATGTTTTCGCCTGCAAGGTCTTGGGGAAAGTGGGCTCA
cagcttttctatttttctatatgGTTGAGCCCATTTTCTCAACTATTCAA
TGAGCGCCCGATCTGCACCTTGCTTGGACTggctacccaattcccctcac
aagGCACTGCAATCTAACCTCActtgtgcagcaaccaaggttgcatacct
tttaatgttcaaaaccaaaaaactgaaactgtttcactaaactgcaaatg
gtttgggtttgtttacctaAACAAAGAAGCTGTTACATTGCTAATTCGAT
TTCTAGGATCTTGCCTGAAGTCACAACaacgaatttcaaaatggtagccc
agCGGAAGAAAACATTAAAGCTTAGGGCTTATGCATGCGTGCGCTTAGTG
AACCAGCGTAAACAAGGTGTAGTGCTTGGTTAGAATAATGgtttagcaaa
acaaaaaatcaaatggtaCAGTTTGTTTGCTAAACCCTCGGTTTAGCGAA
CaaagaaaacacagaaaaaagacTTTTGGCTTTGATTGTCTGTTTAGgta
aacttttaaatgaatcaaTACGTTCGCTAAACcctctgtttcactttttt
gggtttttggctaaatggtatgcaccccaaggtcaatgaccaatTTACCA
CAGCGCCTAACTTAtaacttataacttttgatactattttatatttattt
ttgatatttgccatgttaaaataaagttttctgtctgatgtaaccaacaa
aactggGTTGGTGtgatttaagatgcacgatctaacaaTTTATGATGCAC
GATTTGCggtccgtgcataaaatatgttaattcaagcgtaattatgctaa
tcatgatgaaatatttaggcaatttcCAAACattcattcgctgaaactca
attatttttaaaaacatcaattatgtaagattatacaaattatatttaaa
gaaGCTTTCGGTGGGTTTTCCTGACTGTACCATGATCCCTTTCTCTGTTC
AATTTTAAGATTCGGTCATAGATTAAAAGAAAGTCAAAGCCACATGCATT
CACCTTCGGTgctctctctttttcataacttgaatcaatataggggaatt
gcttaccaaaagaaaattctttctcataatagagcacgCGTTTTTTGCTT
CGtgcattacggtccgcaaaagATATTGTTCACAAATATTTTACTTGCTt
taatcatagtataagaaagccgtggctggaatatgtaccacattgtcttc
tcagttaattgctgttctatctctgtctccgagctttataagaacatcaa
gatgctcagtttattattggtagaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNatgctcagtttattattggtagatagtttttgaaattgttctctt
attttccttcacaaaaagtttttttattgctagatatctttgaatctgta
cccgaTAGAACACttcgctaccttaattcaaaaggggcctaagtccattt
gggtcattttgagaaaattgcaattaaagtttttccttGATTCTGAAACC
GTTTTTGATGGTAAAGCTTTGAAGTAaatgttttctgaaagccaTAGCTA
TAAGTTGTTTTTCCAATGAAAAGGCATTCGTTTGAAAGGAATGTATTTTT
GTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATCAAAAGAGAGCAAATGAGccagagattgagaaaaactaaagatctcaa
atttcataaaaatggacttaggccccttttgaattaaggtagcgtTGGAC
taatttggacatattttaggggtattttgtggaaaaaatagtttttcacc
aaaattgaaattataagaactatattcaagatgacaactttcttgtcagt
ttgaatgataaattttgaaggtgctggcttgaaacttTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTATctagatgtactttttcattgatttct
aaaaagatttcactgaaatattgcgaaggcattcgaggcactttgtttat
ttttgagttctttcagcccagcccttttgtgcttgtttaaatttcttatt
gattgttgatctttcctttacaatgattttataatgcaagtgtattatta
TCAAGggtatatcattaatgtctaaaacacactgagaagtaagtattaac
gacaaaccaataaaatttaccattacaCATTACTGATCTCTTGATCAAAT
actcatcaaatacgacagagatagaacaacagaagttcagatgttatcat
tccagccgcggctttcttatactatgctttaATAGAAATAAGAAATTCCT
ATATTAGAgccaaaattatattttgtgcattgtttactttcactcttatt
gtaagattatgTTCACAGGGTAGCATGGCATGAACCCCCCAGCCCGCAGG
GGGGCTGAGGGGGGActacaaccaaaatcttcctgaaaaaggctgggggc
tggattttttttcaatttcagggggtatctatgatctctgggggtatcta
acttcatgcagtaaggtctgggggcttgggaactatattttatcttgctt
ttatctaactatcattattctttttggacctacctaaggtagtcctttaa
attaacccttgtccgttcgttcgttcgttcgtttgtttgttcgtctgttc
gttcgttcgtccgttcgttcgtctgttgccagcttttctcaggattggct
cattagttttttctgatttttggcacaatgatgcaaaatggcaatNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNagccggaactatttaaaaatcgccggaacaacc
tattttcgccggaaatacagtatttcttgaatttctcgagctgtacttta
tatttttttatgaaattttgcagattgatgcaaaatgacaatacctaaaa
tgtgacggagcctgattttcgaaaaacattttttccgtcctttaaattaa
cccttgtccgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgtttgttcgtctgttcgttcgttcgtccgttcgttcgtc
tgttgccagcttttctcaggattggctcattagttttttctgatttttgg
cacaatgatgcaaaatggcaatNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATT
Ttctccggccgaaaatgccggaaatatgccggaaaaactgtttttttggc
attttatcgagattttatcattagttttttctgtttttttgcacatagat
gcgtaATAGcattgcccaaaacatggctgagttcgatttttgagaaaagt
tcTATTcttgccgaaaatgccagaaatataccggaaatcaccgtttttgc
agattttcatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATAACAATGccaaccatcaagca
tggttcaattgtcaataaaactgatttttgatgccggactttctaaaaat
cgccggaacagccgaatatcgccggaaaaacactttttcttgaatttctc
gagctgtactttatattttttcatgaaattttgcagactgatgaaaaatg
gcaatacctaaaatgtgacggagcctgatttttgaagtAAAACAatttcg
gccaaaaatgccgataatatgccgtcaaaaccggtttcttgccattttct
cgagatttcattaatcgtttttcccgatttttgcatGAAGATGTGTATCA
ATCAGCAATGCCCTAAGTGTGGCCGattcggatttttgagaatctTGTCA
TGCCGGAAgtgtgccggaaatcgccgtttttgcagatttgaattgggctt
tttccatatatttctttgttttttcacttaaaaaaattattgNggaaatc
gccgtttttgcagatttgaattgggctttttaccatatatttctttgttt
tttcacttaaaaaaattattgataacaatgacaccatcaagcatgattca
attgtcaacaaAACCTTTGCAAATTTGCAACCGGAACTTTCTATTTCTTT
TTTCCCTAAACCCCTCCCCCCCCATCAAATATCAATGATaaaattttatg
cattttcgctaactgctatattttctaaatgattgtttttctccttattg
ctatctaagtttcatcatcaggtaggtccattcagcatattgcttgttaa
ttgtaaaaatatactatttttttcatttcttgacatatactcaagtcaca
ggggtaccaatcacagggggtacctactaaTAGGGACCgcgaaagacggg
ggtaaaatggtTGGAATCGACCAAAATGCtgtttttaggttttagacCAC
CTATAACCATGGGATAAGTTTTAGAAGCATTCTTATCATTAAATAAATGT
CCTGTAAAAGTTTGGTGGCCATAACTTTATTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGatgaatgacccctcattttt
tttcttttttgatgctcTTTCCAATGAGCATGGTTTCAATGcgctaaaaa
caatttgaaaaaatcattgcggTCCCTACTACTAACATTTGTTCTTTGGG
GGTACCcaaaattcagggggtacctaaacccctggtccatgccatgaGGG
TAGGTTCCATTATCAACATTATGTAAGTtagttttttcataattttacag
TTGTAATTATTTGTGGTTCCATTGCTTATACTTATTTCTTTTGTGTTTCA
TAAATTTActgtggtaaacaaaagcgagaaaagattgtgccattttttta
gaattatattatataattcaagttttatgataatcattaggaataatcag
caaaCCTTATGCATGGATCggcatcgtgaatcgtaaatcaTTAGATAGTG
CATCTTAGATTACACCAACCCATTAAAACTATGGCGTGttaaacattttc
tgttaggccaactattcctgaatctgaaaatttaaaaatcatagtgaaaa
aatttgatgaagaagaaaatgaagactttcgcgaagaagagtattttggc
aaagaaaaaacattttgaatttttttttgtgttagatggtgtatctttaa
cctAACTAAAAtgagattttcggaaaatttttgtaaaagcttctttgtct
cgaaatcttgaaaataatgcttttgacaaacttttcatcccaattttttg
taaaaaaacagtcataattttttacacatttttaaagttaaaaataataa
ctaatagttcaattctttgcggacaatttaaaaaaagtttgaaacaaaaa
ggttaactACCGgttaaaactttttgatgaagaaggtattataacatttt
attaacgtctttttaaaaatcatggCGTCATTCTTGTAActaaattttta
attactcttaaCAGGATAAATTACCAAAAGACTTGtaaagttttttgtta
aaagtgtcaaggaaaccaaaacaaaagttttatcttaaATCCCTAAACCA
AATTCTCCGACTAtgatcagagcccttaaatgcgAGAGAAAcgagaaaaa
gatctccggGGGAGGGCTACTGTCAAACTTTGAACAGGTCTTTTTTGCTT
CAACATTCAAAGGAATTTTAGTGTGTTTGAAGCgctcagctacagcttaa
ccagagtgcgacgccgggtaccggctagtgtATTATTAAAGGACCCAAAG
TACAATCATTCTCTTTTACAGGACTAAAAAATTCATCACTACTGGATTTG
TCAAATAAGTAAAATAATCATGTCAGTTGAGAGTAAAGCTCGCGTTTATG
CCGATGTCAATACACACAGACCAAGAGAATATTGGGATTATGAATCACAT
GTTATTGAATGGGGGTAAGTAATATTCAACACCATGAATCTTAAAACCTT
CGCTTAATATTAAGGTTAATCAGTAACAAGAGCCTTCGCTTCAGGATGTT
gttaaatcaaattttgaaaatataattttactcAGTGGTCAAACTCTTTC
TTctcgaaaacattttttgtcatgAAGTTTTGAAAGATGCAGCTTATctc
aaaaattcaataaaataatAAGTATATGGGTCAGTTTGTTGTGTAAAGTC
CATTTTCTATcttagaaagaaaaattaaagctTTGATCTGACCAATGTTG
CTGGAATATCTAAAAATCACCAACATTCTTAACTAATTGTAATGCCTAGC
ATACTATACCCCTCCCTTTATAAATCTAATCCCCTAATTCATGACCAACT
CAACCTATTCTCACAGTTAACCTACCCTACAACATCTTCACAAAGTctta
ttcaaaatattctttacAAGGCTCCTCTTTATAAGACTAATTTGTCCTAC
CCTTTCATTTATTAAGTGACAGTGATTTTTTTTGggtatttgaaatctct
atcaTAACACCTTTTTTGGTGAAATTCATGCCACTTCATTTAATGTTCAA
GTATTTATTTCTTTGATTAAAtaatatgaaaaatttatttctaGGCAACA
AGACAACTACCAGCTAGTAAAGAAGCTTGGACGAGGAAAATATTCAGAAG
TATTCGAAGGAGTCAAAGTCACAAATAACGACaaagttgtaataaaaatt
ctgaaggtaaaaagaaatttctgagctgcattttattaagtatgtaattt
tgaataatttttttttcagcataCCTTTGCACAATAGCTAGAACGAAATA
AGTAAAATCAtgtattaaagtctgtctcgaaataatttgcagctggagac
aaaaatggctgtaacttttgatagaattcgaatcaagttgcgattaagtg
cttgttaaaaagatattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctttttaa
cgagcacaaaatcgtaacttgatttgaattctatcaaaagttacagccat
ttttttctccagctgcaaattatttcgagacagactttactaGAATCTTC
TTTGGATTTTATAGATATACCAGTAAATTAGGCCTGTATAATGAATTGTA
TCATTCTGtccagaaaagtaacaaaatgtcaatgttttcattttatagcc
tgtcaaaaagaagaagattaagcgcgaaataaaaattttagaaaatttgc
gAGGAGGACAAAATATCATCACATTACTGGATGTAGTTAAAGACCCCGTG
GTAAGaagaattttgaaatgtttattttttcttctcttaGCAGTCATTTT
TTATTGAAGATGAGAAGATGGAAATTGGATGTGTAAAATCACAGAAGCAT
AATGAAGAAGTAGAGTTCACAAACCTGTTTTATCGGGCTTGAAACAAATA
TTTGCAATCTTGAAGACAAACCTTTGGAACCTTCCATTAAGTACTTCAAA
GGGAGGGTGGGGTTCTTTCATATAGTACGCAAATAGTTGAGGGGGAGGCT
GGGGttcttttattgtttgaatAATAGCCTTTCTATTATTTTCTGCGTGC
AAGGGGAAGGGGATGtaaaaaggtttgaaaaatattgacctACATACTAT
ATGGATGACCTCTTACCTATTTATTATAATGTCATtaaaaaagataattt
caaCATTATACGTTTCATGCTCTTTCCTTTTTAGTCGAGGACACCTGCAT
TAGTTTTTGAATATGTCAATAATACAGATTTTAAGGTATTGATTGATTTC
ATATGCTTGTCTGTCCCTAATTCATAGAGTGATTTTATtaataatatcaa
attttctttttcacgaaGTACAAGTTTCTATTTGTATAAGCTAGCATCGT
CATTTCTTCTTTCTTCGCTTGGGCTTTTGTTTCAAGCCAACATAATCTTG
ATGGCAAAGTGATTGTTAGTTAACATAAACCTCGTTGATCAGACTTAGAC
ATGAGATTGTTCTTTGAAACATGAAAAGGGTGTAATATATATCTTTTGTT
CTTCATTTCAGTCGCTTTACAATCAGTTTACGGATCACGATGTCAGGTTT
TATATGTACGAATTATTAAGGGTAAGTTAAATAGCCTCTATTTTGCCGAA
ACAGAACAAAAATTAACAAGATTACTTTTTTCGATTTGTATCACCTTTAT
AAGTCTCGTTTTCCATGCCAAAGCTCATGATGAAATAGTCGTTTTCTGTA
aattattggacctacctccgggtaccccggtggaggttctataaattaac
ccatgtccgttcgtccgtccgtctgttaccagcttttctcaggattggct
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgcccaaaatgtg
acggagccagatttttaaggaaaattcttttgggcaaatttgggccaaaa
acagcttaaaaggttttttgggcctgaatggtttataaagtgatttttgt
attttagggaaattcctttttaccattttacattattcaacacacaagct
ttatttttccattctgaatttttgtacaattattgtcacttttttcttat
tttcatctgatgttaatcattaggtaggtccattcagcattttgcttgtt
ttattttttttcgaatccTTTCGTGAGAATGTGCACACAATATTTTGTCC
AGCGATAAATTAGACAAAATTAAACCAGCCTGAACCAGCCTCAATTCTGA
TAATGGTTTTGTCTTTCACCCACCAGGCGCTTGATTACTGCCACAGTATG
GGAATCACTCACAGAGACGTTAAACCGCACAACGTCATGATCGACCACGA
ACAAAAGAAATTACGACTCATTGATTGGGGTTTAGCGGAATTCTACCATC
CAATGCAAGAGTACAACGTCCGTGTGGCTTCAAGATATTTTAAAGGGCCC
GAACTTTTGGTTGACTTTCAAGAATACGATTACTCACTGGATTTGTGGAG
TTTTGGTTGTATGTTTGCCTCAATGGTAAGTTATAAAAGCTTATTCACAG
ACATAATTTAGTCTCGCTGGACAGTCTTATGCTACTTACATAATCTTCTG
ATTGGAGCTGCTCTGACTTGTATACTTACAAGTTGTATACTGTGCTTGCT
TGCTTGGTTGGACATTTAGCATAGATATTACTATTCTATGTAATACTGAA
AATAATGGTTTTGTATCCTTGTCTTGTTGTATGTTGAGCTTGTTCCTTAT
TCTATTTTGATCGTTTATATCTTTAGATCTTTCGCAAAGAACCCTTTTTT
CATGGACACGACAATTACGATCAAGTAAGCAAACTCTATTTAAATACCAT
GCTTTTTGGTAGAGTCCTCTACTTTATTTTTTACGTTAGTAAGCCTCGAC
ACCAAGCCTCGACACTAAGCTTTCACTTGTCTTAATTTGGAGAATTAAGC
AAAATGTTATAAAATTATATTGATAATTCTTTTGGTATCATCGTTGAACT
TTTACATTTCCTAAGCTTGTGAGAATTGCAAAGATCCTTGGTACAGATGA
ATTATTCGATTACATGGACAAATACGGAATCAGTCTGGATCCTCGCTTCA
ACGACATCCTCGGCAGGTTAGTTGATAAttggttttcaaattttcaaata
ttgaatGCCATCTTGATAATGGTTCCAAactaaatggaaaaaaaaagcCT
CACTTACATCAGTTTTATCGCGTTTTCTATTTGCGTTTCACAAAGATATA
ATCCTCAGGTGGCGTGCAACACACTTTCCCAGCTTCAAGTTGCTCACTGC
ATCATACTTTTTGTATTGCAATTcccttttttctcttttcaatgTTAGAC
ATTCAAAGAAACGATGGGAACGTTTTATCAACACAGACAACCAACATCTA
GTCAGTAGTGAAGCTCTCGACCTTTTGGATAAACTACTCAAATACGATCA
TATGGTATGAACGCTTTCTGTCATTCCTTGATTTCGCTAAGCTCTGCTTT
TGAAAATTAACTTCAGTGGCaactttcttgaaaataaatacaGTGTTGAC
CCTATTCAATTTTGATGACAAATACAGTAgattctctttaactcgaacct
ctataactcgaacgtcTCCTTAGCTCGAACAAGTTTTCCTGTCCATTCAT
TTACCAATGCGCTATAAACCCTAGTCTTCCCGTgtgggttcgagttatgg
agactccactgtagaaTCGCAAAAAGATAAAATCAACATCGATATTTTAA
ATTCCTGATGAAGATTCTATGTGTTTATGGTTACTGTATCTAATTCACTT
TTAGGAACGATTGACGGCCAGCGAAGCCATGGACCACCCTTACTTCGGTA
TGTCATTATTAAAAGCTTTACCctccattcttttttttttaatgtttgca
gaaaatgtccgtacatgggggggggaTAAAGTGTCCGGGAGGGTAGTGAA
AGTCTACAAAATGTGTCTTGTTCGGGGGTAAACTTTCTCTAAAAGCCCAA
TTTTTGAGACATATTTTTGCCTTTGTTCAAAACCATTTTGTCAATGGTTG
GCTAATTAtctgaaaatgtaaaaatgtgTTAAACCTGtaacaaagatttt
tatttgttcgaatttcAAACTCGAAGAAATTCGCTCAGAGGATTTTAACA
TCAATAATTTGTATTTACTCCCTGTTAGAAAACTTAAAATGTAAAAGCAG
TAAATTTATGGAACAGAAAAATAAAGCGACTGCTTATGtagaaattttcg
tcatctttaCGCGACTTCATCAGCATAATAGCTCAACAAAAAGTGatatc
tttttggacctaccccggtggggtagaggtcctataaattaacctttgtc
cgttcgttcgtccgttcattcgttcgttcgttattagctttcctcgtgat
tggctcattagttttttaagattttttgcacaaagatgtgtaactataaa
ccctcaaatgtgacggagcccgattttcgaaaaaaaaaaaattttgggca
aattgtgccaaaaaacggctaaaaaacgggttttttggactttgtgaaaa
attggatcattaacttcttctgaatttttgcatgaaagtagggtactatc
ataggtaaaagatggctcaagcagattttttcaaaaaaattttgttggat
caaaaaacgcatgtttatctataagaatcactattattaagcatacatca
atgttcttagttaaattactcaattttttcatgagatagatgttttattt
gctcatgagggcttactttagaagaatgtgtgtgtttagacatgacaTTT
TGGtagcttggcgtgtttttatagaaaaactggccaaattcgatatttat
ttataagcacattattaTCAATtgcttaggtattagcttttctcgagatt
ggctctttgattctttatgattttttgcacaaagatgcataactataaac
cctcaaatgtgacggagcccgattttcgaaaaaaaaaattttgggcaaat
ttaggccaaaaaaggctacaaaacgggttttttggactttgtgaaaaatt
ggattattaactttttctgattttttgcatgaaagtaggttaccatcata
ggtaaaagatggctcaagcagatttttttaaaaaaattttgttggcccaa
aaaacgcatgtttatctataagaatcactattattaagcatacatcaatg
ttcttagttaaattactcaatttttttatgagatagatgttttatttgct
catgagggcttactttcgAAGAATGTGTGTGTTTTAACATGACGTTTTgt
ttgcttggcgtgtttttatagaaaaactggccaaattcgatatttattta
taagcacattatcaattacttaggtattagcttttctcgagattggctct
ttgattctttatgagtttttgcacaaagatgcataactataaaccctcaa
atgtgacggaacccgaatttcgaaaaattgattcattgattttttgcatg
aaagtagggtaccatcataggtaaaagatggctcgagcagattttttcaa
aaaggttttgttggctcaaaaaacgcatgtttatctataagaatcactat
taataagcatacatcaatgttcttagccaaattactaaatttttttatga
gatagatggtttttttgctcacgaagtcttgaatatgaaagaatatttca
agagcatgaaattttgttttctaaacgttttttttttataattacaagaa
acaaacgactaattttaatagatcgtcactatttgtgttctgaatgattg
tttaatggtcacgctcacgtagatatcaattatatatgtgttaaatgcac
aactaggtaggtccataaaagtatcacttgtttataaTGGAAGCTAGGAA
TTTGACCAAAGACTCCCTGTtaattatataatttttttttctttctctgt
TTATTTTTAGCTACAGTAAGACAAGGAGCTGAGAAATCTGACGCCAACAA
CACCAGCACAGGTGCAGCATCGTCGCCATCAACACCATCCAAATAGACAT
TTATACCAACCAACAAAATATCCCTCTTGGAAAGAGAAAGACGAACGCCC
CCGTGTTTttgtacaaaatattttttaacccaATACGATCGTTTAGCGAT
GGGAAAATATGATGGCTAAATGGAATGAAAGAACTGATGGTTACAAATga
cgaaaaaataaacaattgtTGATCAGGTTTCTAGTTGTTGGTGGCTAGTA
AATGATAGTTATTCTTGGGTGAATGGAATTAAACATCACGATGTACCGTT
TAGAACACACTGACAATTCAATGGAATGCTTTGATTGGATGAACATTAGA
CAGCAGTGTATGATGCTATGAACAGAATACAACTTAAGCAATCTAGAACT
GTTAAGCGGAAATCAGGATGAAATTTGAAACCAGAAAGTCTGGTTTGTTT
TTTATCATGGTTTCAGTTTGATTTCTTGGTTTATGATATGGGACAAACTT
GAAACCTTTTTTCAATGTTTCTATAAGCAATAGTAGTTGAATGTTGTCTC
GAATATTGTAAACCGAGAAGTACCATATCTACTAGATTCCGTTGGTTGTG
TTTAaaaatctattttccaattagtGAGGGTTGCTAGGCTCCTACCCTAG
ATTTCTAGTTGAACCTTTTTAAAATTCACAATCTCTTGAAAagggtttta
taaaaaaaataatttataataatgatattttttagaACCAAAACTTTACG
ATCTTCATTTTGGGCGAACAGAAAATGAGTTGGATGTTCTGTcttttcgt
ttgttttgaaaaattaatttgaagatAAATCAAGTCAAACTAGTAAAACT
AAAGATCCGATGACTTTTTACGAACATGTTTAAGTGAGGATGCGCtgaca
attttttatttgttttctttaTAGTCAGCATAAAGATAAATTATATGATG
TGacgatttttttttagaaaaaaaaacgtatTCATTATTCAATTActtgt
aattattttcaaactttatgtATGACTTAACGAAAATGAAATTTCTAGAA
catttttatggtttttcttAGTGCGAGGTCTGCTTGAAGAAGATGTCCCG
TCTTAGATAATTTAAGCTGAAGAGAGCCCTTCTCTAGAAGATGCTCATGC
TAAGGAACAAATCACTCTGGTGGAAATCTTTCTTTTTACCAAGTCAGAAC
CCTCTAAGGACCAAATACTTTGAGAATTTCGTGACTGTAAAGTTTCCGAA
AATCTAGCCTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001076XLOC_001076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002045-exon-sc0000018-1491911889:462624..462646TCONS_00002045-exon-sc0000018-1491911889:462624..462646Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:462624..462646TCONS_00002045-exon-sc0000018-1510915933:462624..462646Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:462624..462646TCONS_00002045-exon-sc0000018-1575043694:462624..462646Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:473895..474037TCONS_00002045-exon-sc0000018-1491911889:473895..474037Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:473895..474037TCONS_00002045-exon-sc0000018-1510915933:473895..474037Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:473895..474037TCONS_00002045-exon-sc0000018-1575043694:473895..474037Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:474668..474779TCONS_00002045-exon-sc0000018-1491911889:474668..474779Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:474668..474779TCONS_00002045-exon-sc0000018-1510915933:474668..474779Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:474668..474779TCONS_00002045-exon-sc0000018-1575043694:474668..474779Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:476572..476673TCONS_00002045-exon-sc0000018-1491911889:476572..476673Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:476572..476673TCONS_00002045-exon-sc0000018-1510915933:476572..476673Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:476572..476673TCONS_00002045-exon-sc0000018-1575043694:476572..476673Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:477108..477158TCONS_00002045-exon-sc0000018-1491911889:477108..477158Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:477108..477158TCONS_00002045-exon-sc0000018-1510915933:477108..477158Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:477108..477158TCONS_00002045-exon-sc0000018-1575043694:477108..477158Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:477435..477494TCONS_00002045-exon-sc0000018-1491911889:477435..477494Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:477435..477494TCONS_00002045-exon-sc0000018-1510915933:477435..477494Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:477435..477494TCONS_00002045-exon-sc0000018-1575043694:477435..477494Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:478350..478598TCONS_00002045-exon-sc0000018-1491911889:478350..478598Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:478350..478598TCONS_00002045-exon-sc0000018-1510915933:478350..478598Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:478350..478598TCONS_00002045-exon-sc0000018-1575043694:478350..478598Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:478850..478897TCONS_00002045-exon-sc0000018-1491911889:478850..478897Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:478850..478897TCONS_00002045-exon-sc0000018-1510915933:478850..478897Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:478850..478897TCONS_00002045-exon-sc0000018-1575043694:478850..478897Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:479089..479189TCONS_00002045-exon-sc0000018-1491911889:479089..479189Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:479089..479189TCONS_00002045-exon-sc0000018-1510915933:479089..479189Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:479089..479189TCONS_00002045-exon-sc0000018-1575043694:479089..479189Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:479422..479527TCONS_00002045-exon-sc0000018-1491911889:479422..479527Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:479422..479527TCONS_00002045-exon-sc0000018-1510915933:479422..479527Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:479422..479527TCONS_00002045-exon-sc0000018-1575043694:479422..479527Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:479878..479920TCONS_00002045-exon-sc0000018-1491911889:479878..479920Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:479878..479920TCONS_00002045-exon-sc0000018-1510915933:479878..479920Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:479878..479920TCONS_00002045-exon-sc0000018-1575043694:479878..479920Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1491911889:482034..483338TCONS_00002045-exon-sc0000018-1491911889:482034..483338Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1510915933:482034..483338TCONS_00002045-exon-sc0000018-1510915933:482034..483338Clytia hemisphaericaexon
TCONS_00002045-exon-sc0000018-1575043694:482034..483338TCONS_00002045-exon-sc0000018-1575043694:482034..483338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:462624..483338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.6583	44.1136	17.1627	19.7498	0	0	7.75233e-05	0	72.1414	65.5113	67.2393	57.1772	63.5534	62.0021	47.8079	40.9528	29.3078	37.3273	35.3909	50.1757	47.7724	47.84	39.0119	39.8858	2.97555e-10	0	31.0594	24.5548	28.9383	32.0629
Blast
[Close]
BLAST of TCONS_00002045 vs. Swiss-Prot (Human)
Match: CSK21 (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 521.161 bits (1341), Expect = 2.301e-178
Identity = 269/323 (83.28%), Postives = 298/323 (92.26%), Query Frame = 3 
Query:   78 VESKARVYADVNTHRPREYWDYESHVIEWGQQDNYQLVKKLGRGKYSEVFEGVKVTNNDXXXXXXXXXXXXXXXXXXXXXLENLRGGQNIITLLDVVKDPVSRTPALVFEYVNNTDFKSLYNQFTDHDVRFYMYELLRALDYCHSMGITHRDVKPHNVMIDHEQKKLRLIDWGLAEFYHPMQEYNVRVASRYFKGPELLVDFQEYDYSLDLWSFGCMFASMIFRKEPFFHGHDNYDQLVRIAKILGTDELFDYMDKYGISLDPRFNDILGRHSKKRWERFINTDNQHLVSSEAXXXXXXXXXYDHMERLTASEAMDHPYFATV 1046
            V S+ARVY DVNTHRPREYWDYESHV+EWG QD+YQLV+KLGRGKYSEVFE + +TNN+KVV+KILKPVKKKKIKREIKILENLRGG NIITL D+VKDPVSRTPALVFE+VNNTDFK LY   TD+D+RFYMYE+L+ALDYCHSMGI HRDVKPHNVMIDHE +KLRLIDWGLAEFYHP QEYNVRVASRYFKGPELLVD+Q YDYSLD+WS GCM ASMIFRKEPFFHGHDNYDQLVRIAK+LGT++L+DY+DKY I LDPRFNDILGRHS+KRWERF++++NQHLVS EALD LDKLL+YDH  RLTA EAM+HPYF TV
Sbjct:    5 VPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327
The following BLAST results are available for this feature:
BLAST of TCONS_00002045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSK212.301e-17883.28Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
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